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(-) Description

Title :  FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
 
Authors :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheesema M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Rich C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Date :  22 Sep 15  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym./Biol. Unit :  A
Keywords :  Heat Shock Protein, Hsp70, Hsp72, Hsc70, Atpase, Bag1, Chaperone, Fragment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheeseman, M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Richards, C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Fragment-Based Screening Of Hsp70 Sheds Light On The Functional Role Of Atp-Binding Site Residues
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK 70 KDA PROTEIN 1A
    Chains: A
    EC Number: 3.6.3.51
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Expression System Vector: PGEX-6P-1
    Expression System Vector Type: PLASMID
    Fragment: NUCLEOTIDE BINDING DOMAIN, UNP RESIDUES 1-380
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEAT SHOCK 70 KDA PROTEIN 1, HSP70-1, HSP70.1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 24)

Asymmetric/Biological Unit (4, 24)
No.NameCountTypeFull Name
1ADN1Ligand/IonADENOSINE
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3EDO21Ligand/Ion1,2-ETHANEDIOL
4MG1Ligand/IonMAGNESIUM ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:202 , GLY A:230 , GLU A:268 , LYS A:271 , ARG A:272 , SER A:275 , GLY A:339 , SER A:340 , ARG A:342 , ILE A:343 , HOH A:2228 , HOH A:2253 , HOH A:2314BINDING SITE FOR RESIDUE ADN A1389
02AC2SOFTWARETHR A:13 , LYS A:71 , ARG A:72 , ARG A:76 , TYR A:149 , PHE A:150 , EDO A:1397BINDING SITE FOR RESIDUE EDO A1390
03AC3SOFTWAREGLY A:12 , THR A:13 , LYS A:71 , PRO A:147 , GLU A:175 , THR A:204 , EDO A:1408 , MG A:1412 , HOH A:2006 , HOH A:2169BINDING SITE FOR RESIDUE EDO A1391
04AC4SOFTWAREGLY A:34 , ASN A:35 , ARG A:36 , THR A:45 , THR A:47 , GLU A:48 , HOH A:2054BINDING SITE FOR RESIDUE EDO A1392
05AC5SOFTWAREALA A:148 , ARG A:155 , ASN A:174 , VAL A:219 , EDO A:1401BINDING SITE FOR RESIDUE EDO A1393
06AC6SOFTWAREARG A:49 , LEU A:50 , ILE A:51 , LYS A:126 , HOH A:2320BINDING SITE FOR RESIDUE EDO A1394
07AC7SOFTWAREASP A:152 , GLN A:156 , LYS A:159 , HOH A:2178BINDING SITE FOR RESIDUE EDO A1395
08AC8SOFTWAREASN A:31 , ASP A:32 , THR A:38 , ASP A:53 , LYS A:126 , EDO A:1398BINDING SITE FOR RESIDUE EDO A1396
09AC9SOFTWAREARG A:72 , ARG A:76 , VAL A:82 , ASP A:86 , THR A:226 , HIS A:227 , EDO A:1390BINDING SITE FOR RESIDUE EDO A1397
10BC1SOFTWAREASN A:31 , ASP A:32 , LYS A:126 , ILE A:130 , EDO A:1396 , HOH A:2152BINDING SITE FOR RESIDUE EDO A1398
11BC2SOFTWAREARG A:49 , TYR A:107 , LYS A:112 , PHE A:114 , EDO A:1400BINDING SITE FOR RESIDUE EDO A1399
12BC3SOFTWAREARG A:49 , GLU A:118 , ILE A:164 , EDO A:1399 , HOH A:2072 , HOH A:2146BINDING SITE FOR RESIDUE EDO A1400
13BC4SOFTWAREPHE A:217 , GLU A:218 , VAL A:219 , EDO A:1393 , HOH A:2188BINDING SITE FOR RESIDUE EDO A1401
14BC5SOFTWAREHIS A:332 , ASP A:333 , ASP A:358 , ASN A:360 , HOH A:2292BINDING SITE FOR RESIDUE EDO A1402
15BC6SOFTWAREALA A:60 , ALA A:133 , TYR A:134 , ARG A:258 , ARG A:261 , HOH A:2321BINDING SITE FOR RESIDUE EDO A1403
16BC7SOFTWARESER A:85 , ASP A:86 , HIS A:89 , HIS A:227BINDING SITE FOR RESIDUE EDO A1404
17BC8SOFTWAREARG A:171 , HIS A:240 , GLU A:243 , HOH A:2187 , HOH A:2229BINDING SITE FOR RESIDUE EDO A1405
18BC9SOFTWAREGLY A:75 , PRO A:116 , GLU A:117BINDING SITE FOR RESIDUE EDO A1406
19CC1SOFTWARETYR A:149 , GLY A:224 , ASP A:225 , THR A:226 , HOH A:2210 , HOH A:2211 , HOH A:2221BINDING SITE FOR RESIDUE EDO A1407
20CC2SOFTWARETHR A:13 , THR A:14 , TYR A:15 , GLY A:201 , GLY A:202 , EDO A:1391 , MG A:1412 , HOH A:2294BINDING SITE FOR RESIDUE EDO A1408
21CC3SOFTWAREASP A:232 , ASN A:235 , ARG A:236 , ASN A:239 , LYS A:382 , SER A:383 , THR A:384 , HOH A:2226BINDING SITE FOR RESIDUE EDO A1409
22CC4SOFTWAREARG A:299 , GLU A:303 , LYS A:348 , HOH A:2269 , HOH A:2273BINDING SITE FOR RESIDUE EDO A1410
23CC5SOFTWAREARG A:262 , GLU A:283 , ILE A:284 , ASP A:285BINDING SITE FOR RESIDUE DMS A1411
24CC6SOFTWAREEDO A:1391 , EDO A:1408 , HOH A:2006 , HOH A:2009 , HOH A:2189 , HOH A:2206BINDING SITE FOR RESIDUE MG A1412

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AQY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AQY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AQY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AQY)

(-) Exons   (0, 0)

(no "Exon" information available for 5AQY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:387
                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhh....hhh.ee.hhhhh......hhhhhhhhh....eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aqy A   2 AKAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILIKSTRAAA 388
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AQY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AQY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AQY)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HS71A_HUMAN | P0DMV8: 1hjo 1s3x 1xqs 2e88 2e8a 2lmg 3a8y 3atu 3atv 3ay9 3d2e 3d2f 3jxu 3lof 3q49 4io8 4j8f 4po2 4wv5 4wv7 5aqw 5aqx 5aqz 5ar0 5bn8 5bn9 5bpl 5bpm 5bpn 5gjj 5mkr 5mks

(-) Related Entries Specified in the PDB File

5aqf FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqg FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqh FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqi FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqj FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqk FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aql FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqm FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqn FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqo FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqp FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqq FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqr FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqs FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqt FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqu FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqv FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqw FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqx FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqz HSP72 WITH ADENOSINE-DERIVED INHIBITOR
5ar0 HSP72 WITH ADENOSINE-DERIVED INHIBITOR