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(-) Description

Title :  FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
 
Authors :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheesema M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Rich C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Date :  22 Sep 15  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Heat Shock Protein, Hsp70, Hsp72, Hsc70, Atpase, Bag1, Chaperone, Fragment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheeseman, M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Richards, C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Fragment-Based Screening Of Hsp70 Sheds Light On The Functional Role Of Atp-Binding Site Residues
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK COGNATE 71 KDA PROTEIN
    Chains: A
    EC Number: 3.6.3.51
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Fragment: NUCLEOTIDE BINDING DOMAIN, UNP RESIDUES 1-381
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEAT SHOCK 70 KDA PROTEIN 8, LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN 1, LAP-1, LPS-ASSOCIATED PROTEIN 1, HEAT SHOCK 70 KDA PROT EIN 8, LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN 1, LAP-1, LPS-ASSOCIA TED PROTEIN 1
 
Molecule 2 - BAG FAMILY MOLECULAR CHAPERONE REGULATOR 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Fragment: UNP RESIDUES 222-334
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BAG-1, BCL-2-ASSOCIATED ATHANOGENE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
15P71Ligand/Ion(1S,2R,3R,5R)-3-(HYDROXYMETHYL)-5-(QUINAZOLIN-4-YLAMINO)CYCLOPENTANE-1,2-DIOL
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3GOL6Ligand/IonGLYCEROL
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:230 , GLU A:268 , LYS A:271 , ARG A:272 , SER A:275 , GLY A:339 , ARG A:342 , HOH A:2095 , HOH A:2126BINDING SITE FOR RESIDUE 5P7 A1381
02AC2SOFTWAREASP A:10 , GLY A:12 , LYS A:71 , GLU A:175 , ASP A:199 , GLY A:201 , VAL A:337 , GLY A:338 , VAL A:369 , HOH A:2161BINDING SITE FOR RESIDUE TRS A1382
03AC3SOFTWAREILE A:28 , ILE A:29 , ALA A:30 , ARG A:36 , TYR A:134BINDING SITE FOR RESIDUE DMS A1383
04AC4SOFTWAREARG A:258 , GOL A:1384 , HOH A:2111 , ALA B:249BINDING SITE FOR RESIDUE DMS B1261
05AC5SOFTWAREASN A:256 , ARG A:258 , ALA A:259 , ARG A:262 , SER A:286 , LEU A:287 , GLN B:245 , DMS B:1261BINDING SITE FOR RESIDUE GOL A1384
06AC6SOFTWAREPRO B:147 , LEU B:148 , GLY B:149 , SER B:150 , ASN B:151 , GLU B:155 , ASN B:229 , LYS B:231 , ASP B:232 , HOH B:2005BINDING SITE FOR RESIDUE GOL B1262
07AC7SOFTWAREGLU B:166 , LEU B:235 , LYS B:236 , GLY B:239 , LEU B:240BINDING SITE FOR RESIDUE GOL B1263
08AC8SOFTWARETHR A:265 , ARG A:269 , ARG A:272 , HOH A:2120 , HOH A:2124 , GLU B:219 , THR B:223BINDING SITE FOR RESIDUE GOL A1385
09AC9SOFTWARELYS B:161 , GLU B:220 , THR B:223 , HOH B:2045BINDING SITE FOR RESIDUE GOL B1264
10BC1SOFTWAREASN A:57 , MET A:61 , LYS B:216 , HOH B:2046BINDING SITE FOR RESIDUE GOL B1265

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:201 -B:259

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AQT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AQT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AQT)

(-) Exons   (0, 0)

(no "Exon" information available for 5AQT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:380
                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhh....hhh.ee.hhhhh......hhhhhhhhhhh..eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aqt A   1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5aqt B 146 GPLGSNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQ 260
                                   155       165       175       185       195       205       215       225       235       245       255
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AQT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AQT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AQT)

(-) Gene Ontology  (75, 80)

Asymmetric/Biological Unit(hide GO term definitions)

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  5aqt
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  BAG1_HUMAN | Q99933
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  HSP7C_HUMAN | P11142
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  3.6.3.51
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAG1_HUMAN | Q99933: 1hx1 1wxv 3fzf 3fzh 3fzk 3fzl 3fzm 3ldq 3m3z 5aqf 5aqg 5aqh 5aqi 5aqj 5aqk 5aql 5aqm 5aqn 5aqo 5aqp 5aqq 5aqr 5aqs 5aqu 5aqv
        HSP7C_HUMAN | P11142: 3agy 3agz 3esk 3fzf 3fzh 3fzk 3fzl 3fzm 3ldq 3m3z 4h5n 4h5r 4h5t 4h5v 4h5w 4hwi 4kbq 5aqf 5aqg 5aqh 5aqi 5aqj 5aqk 5aql 5aqm 5aqn 5aqo 5aqp 5aqq 5aqr 5aqs 5aqu 5aqv

(-) Related Entries Specified in the PDB File

5aqf FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqg FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqh FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqi FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqj FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqk FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aql FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqm FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqn FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqo FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqp FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqq FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqr FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqs FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqu FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqv FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqw FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqx FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqy FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqz HSP72 WITH ADENOSINE-DERIVED INHIBITOR
5ar0 HSP72 WITH ADENOSINE-DERIVED INHIBITOR