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(-) Description

Title :  FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
 
Authors :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheesema M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Rich C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Date :  22 Sep 15  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Heat Shock Protein, Hsp70, Hsp72, Hsc70, Atpase, Bag1, Chaperone, Fragment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheeseman, M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Richards, C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Fragment-Based Screening Of Hsp70 Sheds Light On The Functional Role Of Atp-Binding Site Residues
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK COGNATE 71 KDA PROTEIN
    Chains: A
    EC Number: 3.6.3.51
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Expression System Vector: PGEX-6P-1
    Expression System Vector Type: PLASMID
    Fragment: NUCLEOTIDE BINDING DOMAIN, RESIDUES 1-381
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEAT SHOCK 70 KDA PROTEIN 8, LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN 1, LAP-1, LPS-ASSOCIATED PROTEIN 1
 
Molecule 2 - BAG FAMILY MOLECULAR CHAPERONE REGULATOR 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 222-334
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BAG-1, BCL-2-ASSOCIATED ATHANOGENE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1DMS3Ligand/IonDIMETHYL SULFOXIDE
2GOL7Ligand/IonGLYCEROL
3KC71Ligand/Ion(1R,2S,3R,5R)-3-((5-(BENZYLOXY)QUINAZOLIN-4-YL)AMINO)-5-(HYDROXYMETHYL)CYCLOPENTANE-1,2-DIOL
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:15 , GLY A:230 , GLU A:268 , LYS A:271 , ARG A:272 , SER A:275 , GLY A:339 , ARG A:342 , ASP A:366 , HOH A:2119 , HOH A:2161BINDING SITE FOR RESIDUE KC7 A1382
02AC2SOFTWAREASP A:10 , GLY A:12 , LYS A:71 , GLU A:175 , ASP A:199 , GLY A:338 , VAL A:369 , HOH A:2205BINDING SITE FOR RESIDUE TRS A1383
03AC3SOFTWAREASN A:256 , ARG A:258 , ARG A:262 , SER A:286 , LEU A:287 , GOL A:1386 , GLN B:245BINDING SITE FOR RESIDUE GOL A1384
04AC4SOFTWAREGOL A:1388 , PRO B:147 , GLY B:149 , SER B:150 , ASN B:151 , GLU B:155 , ASN B:229 , LYS B:231 , ASP B:232 , HOH B:2013BINDING SITE FOR RESIDUE GOL B1261
05AC5SOFTWAREGLU B:166 , LYS B:236 , GLY B:239 , LEU B:240 , LYS B:243 , HOH B:2052 , HOH B:2060BINDING SITE FOR RESIDUE GOL B1262
06AC6SOFTWAREARG A:299 , GLU A:303 , LYS A:345BINDING SITE FOR RESIDUE GOL A1385
07AC7SOFTWAREARG A:258 , GOL A:1384 , HOH A:2143 , HOH A:2208 , GLN B:245BINDING SITE FOR RESIDUE GOL A1386
08AC8SOFTWAREHIS A:240 , SER A:296 , ILE A:297 , THR A:298 , ARG A:301 , HOH A:2129 , HOH A:2130 , GLY B:146BINDING SITE FOR RESIDUE GOL A1387
09AC9SOFTWARELYS A:251 , ASP A:252 , ASN B:151 , ASP B:232 , GOL B:1261BINDING SITE FOR RESIDUE GOL A1388
10BC1SOFTWAREGLU A:27 , ILE A:28 , ILE A:29 , ALA A:30 , TYR A:134 , HOH A:2209BINDING SITE FOR RESIDUE DMS A1389
11BC2SOFTWARELYS A:71 , ARG A:72 , ARG A:76 , TYR A:149 , HOH A:2048BINDING SITE FOR RESIDUE DMS A1390
12BC3SOFTWAREARG A:171 , ASP A:214 , PHE A:217 , GLN A:376BINDING SITE FOR RESIDUE DMS A1391

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:201 -B:259

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AQV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AQV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AQV)

(-) Exons   (0, 0)

(no "Exon" information available for 5AQV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhh........ee.hhhhh......hhhhhhhhhhh..eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5aqv A   4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 381
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373        


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5aqv B 146 GPLGSNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQ 260
                                   155       165       175       185       195       205       215       225       235       245       255
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AQV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AQV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AQV)

(-) Gene Ontology  (75, 80)

Asymmetric/Biological Unit(hide GO term definitions)

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  HSP7C_HUMAN | P11142
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAG1_HUMAN | Q99933: 1hx1 1wxv 3fzf 3fzh 3fzk 3fzl 3fzm 3ldq 3m3z 5aqf 5aqg 5aqh 5aqi 5aqj 5aqk 5aql 5aqm 5aqn 5aqo 5aqp 5aqq 5aqr 5aqs 5aqt 5aqu
        HSP7C_HUMAN | P11142: 3agy 3agz 3esk 3fzf 3fzh 3fzk 3fzl 3fzm 3ldq 3m3z 4h5n 4h5r 4h5t 4h5v 4h5w 4hwi 4kbq 5aqf 5aqg 5aqh 5aqi 5aqj 5aqk 5aql 5aqm 5aqn 5aqo 5aqp 5aqq 5aqr 5aqs 5aqt 5aqu

(-) Related Entries Specified in the PDB File

5aqf FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqg FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqh FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqi FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqj FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqk FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aql FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqm FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqn FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqo FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqp FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqq FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqr FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqs FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqt FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqu FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqw FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqx FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqy FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqz HSP72 WITH ADENOSINE-DERIVED INHIBITOR
5ar0 HSP72 WITH ADENOSINE-DERIVED INHIBITOR