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(-) Description

Title :  FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
 
Authors :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheesema M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Rich C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Date :  22 Sep 15  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Heat Shock Protein, Hsp70, Hsp72, Hsc70, Atpase, Bag1, Chaperone, Fragment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheeseman, M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Richards, C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Fragment-Based Screening Of Hsp70 Sheds Light On The Functional Role Of Atp-Binding Site Residues
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK COGNATE 71 KDA PROTEIN
    Chains: A, C
    EC Number: 3.6.3.51
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Expression System Vector: PGEX-6P-1
    Expression System Vector Type: PLASMID
    Fragment: NUCLEOTIDE BINDING DOMAIN, RESIDUES 1-381
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEAT SHOCK 70 KDA PROTEIN 8, LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN 1, LAP-1, LPS-ASSOCIATED PROTEIN 1
 
Molecule 2 - BAG FAMILY MOLECULAR CHAPERONE REGULATOR 1
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Expression System Vector: PGEX-6P-1
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 222-334
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BAG-1, BCL-2-ASSOCIATED ATHANOGENE 1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1ADN2Ligand/IonADENOSINE
2GOL12Ligand/IonGLYCEROL
3TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1ADN1Ligand/IonADENOSINE
2GOL8Ligand/IonGLYCEROL
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1ADN1Ligand/IonADENOSINE
2GOL4Ligand/IonGLYCEROL
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:202 , GLY A:230 , GLU A:268 , LYS A:271 , ARG A:272 , SER A:275 , GLY A:339 , SER A:340 , ARG A:342 , ILE A:343 , HOH A:2250 , HOH A:2300 , HOH A:2384 , HOH A:2391BINDING SITE FOR RESIDUE ADN A1382
02AC2SOFTWAREGLY C:202 , GLY C:230 , GLU C:268 , LYS C:271 , ARG C:272 , SER C:275 , GLY C:339 , SER C:340 , ARG C:342 , ILE C:343 , HOH C:2207 , HOH C:2245 , HOH C:2336 , HOH C:2342 , HOH C:2343BINDING SITE FOR RESIDUE ADN C1382
03AC3SOFTWAREASN A:256 , ARG A:258 , ALA A:259 , ARG A:262 , SER A:286 , LEU A:287 , HOH A:2282 , GLN B:245BINDING SITE FOR RESIDUE GOL A1383
04AC4SOFTWAREASN C:256 , ARG C:258 , ALA C:259 , ARG C:262 , SER C:286 , LEU C:287 , GLN D:245BINDING SITE FOR RESIDUE GOL C1383
05AC5SOFTWAREHIS A:249 , LYS A:251 , GLN B:187 , LEU B:200 , ASN B:257BINDING SITE FOR RESIDUE GOL B1262
06AC6SOFTWAREGLU A:27 , ILE A:28 , ALA A:30 , ARG A:36 , TYR A:134 , HOH A:2038 , HOH A:2393BINDING SITE FOR RESIDUE GOL A1384
07AC7SOFTWARETHR A:13 , LYS A:71 , ARG A:76 , TYR A:149 , PHE A:150 , HOH A:2091BINDING SITE FOR RESIDUE GOL A1385
08AC8SOFTWARETHR C:13 , LYS C:71 , ARG C:72 , ARG C:76 , VAL C:82 , TYR C:149 , PHE C:150 , HOH C:2017 , HOH C:2068 , HOH C:2071 , HOH C:2140BINDING SITE FOR RESIDUE GOL C1384
09AC9SOFTWARESER B:150 , ASN B:151 , GLU B:155 , ASN B:229 , LYS B:231 , ASP B:232BINDING SITE FOR RESIDUE GOL B1263
10BC1SOFTWAREGOL C:1385 , SER D:150 , ASN D:151 , GLU D:155 , ASN D:229 , LYS D:231 , ASP D:232BINDING SITE FOR RESIDUE GOL D1261
11BC2SOFTWAREALA B:246 , PHE B:247 , GLU B:250 , HOH B:2089 , HOH B:2090 , HOH B:2092 , HOH B:2095BINDING SITE FOR RESIDUE GOL B1264
12BC3SOFTWAREGLN B:245 , ALA B:246 , GLU B:250 , THR B:253 , HOH B:2089 , HOH B:2096BINDING SITE FOR RESIDUE GOL B1265
13BC4SOFTWAREILE A:181 , ALA A:182 , TYR A:371BINDING SITE FOR RESIDUE GOL A1386
14BC5SOFTWARELYS C:246 , LYS C:250 , LYS C:251 , ASP C:252 , ASN D:151 , ASP D:232 , GOL D:1261 , HOH D:2019BINDING SITE FOR RESIDUE GOL C1385
15BC6SOFTWAREASP A:10 , GLY A:12 , LYS A:71 , GLU A:175 , ASP A:199 , VAL A:369 , HOH A:2018 , HOH A:2381BINDING SITE FOR RESIDUE TRS A1387
16BC7SOFTWAREASP C:10 , LYS C:71 , GLU C:175 , ASP C:199 , VAL C:337 , GLY C:338 , VAL C:369 , HOH C:2069 , HOH C:2334 , HOH C:2344BINDING SITE FOR RESIDUE TRS C1386

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1B:201 -B:259
2D:201 -D:259

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AQF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AQF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AQF)

(-) Exons   (0, 0)

(no "Exon" information available for 5AQF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhhh...hhh.ee.hhhhh......hhhhhhhh.....eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aqf A   0 SMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 381
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379  


Chain B from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5aqf B 149 GSNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQE 261
                                   158       168       178       188       198       208       218       228       238       248       258   


Chain C from PDB  Type:PROTEIN  Length:381
                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhhh...hhh.ee.hhhhh......hhhhhhhh.....eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aqf C   1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 381
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380 


Chain D from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5aqf D 148 LGSNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQ 260
                                   157       167       177       187       197       207       217       227       237       247       257
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AQF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AQF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AQF)

(-) Gene Ontology  (75, 80)

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  5aqf
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  BAG1_HUMAN | Q99933
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  HSP7C_HUMAN | P11142
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAG1_HUMAN | Q99933: 1hx1 1wxv 3fzf 3fzh 3fzk 3fzl 3fzm 3ldq 3m3z 5aqg 5aqh 5aqi 5aqj 5aqk 5aql 5aqm 5aqn 5aqo 5aqp 5aqq 5aqr 5aqs 5aqt 5aqu 5aqv
        HSP7C_HUMAN | P11142: 3agy 3agz 3esk 3fzf 3fzh 3fzk 3fzl 3fzm 3ldq 3m3z 4h5n 4h5r 4h5t 4h5v 4h5w 4hwi 4kbq 5aqg 5aqh 5aqi 5aqj 5aqk 5aql 5aqm 5aqn 5aqo 5aqp 5aqq 5aqr 5aqs 5aqt 5aqu 5aqv

(-) Related Entries Specified in the PDB File

5aqg FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqh FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqi FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqj FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqk FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aql FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqm FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqn FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqo FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqp FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqq FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqr FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqs FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqt FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqu FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqv FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqw FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqx FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqy FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqz HSP72 WITH ADENOSINE-DERIVED INHIBITOR
5ar0 HSP72 WITH ADENOSINE-DERIVED INHIBITOR