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(-) Description

Title :  FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
 
Authors :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheesema M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Rich C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Date :  22 Sep 15  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Heat Shock Protein, Hsp70, Hsp72, Hsc70, Atpase, Bag1, Chaperone, Fragment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheeseman, M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Richards, C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Fragment-Based Screening Of Hsp70 Sheds Light On The Functional Role Of Atp-Binding Site Residues
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK 70 KDA PROTEIN 1A
    Chains: A
    EC Number: 3.6.3.51
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Fragment: NUCLEOTIDE BINDING DOMAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 16)

Asymmetric/Biological Unit (5, 16)
No.NameCountTypeFull Name
15P71Ligand/Ion(1S,2R,3R,5R)-3-(HYDROXYMETHYL)-5-(QUINAZOLIN-4-YLAMINO)CYCLOPENTANE-1,2-DIOL
2DTV1Ligand/Ion(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3EDO12Ligand/Ion1,2-ETHANEDIOL
4MG1Ligand/IonMAGNESIUM ION
5PO41Ligand/IonPHOSPHATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:14 , TYR A:15 , GLY A:202 , GLY A:230 , GLU A:268 , LYS A:271 , ARG A:272 , SER A:275 , GLY A:339 , SER A:340 , ARG A:342 , PO4 A:1386 , EDO A:1395 , HOH A:2295 , HOH A:2326 , HOH A:2414BINDING SITE FOR RESIDUE 5P7 A1385
02AC2SOFTWAREPO4 A:1386 , HOH A:2007 , HOH A:2010 , HOH A:2239 , HOH A:2240 , HOH A:2257BINDING SITE FOR RESIDUE MG A1400
03AC3SOFTWARETHR A:13 , THR A:14 , TYR A:15 , GLY A:201 , GLY A:202 , 5P7 A:1385 , MG A:1400 , HOH A:2013 , HOH A:2240 , HOH A:2257 , HOH A:2259BINDING SITE FOR RESIDUE PO4 A1386
04AC4SOFTWAREPHE A:21 , VAL A:375 , ILE A:379BINDING SITE FOR RESIDUE DTV A1387
05AC5SOFTWARELYS A:126 , GLU A:129BINDING SITE FOR RESIDUE EDO A1388
06AC6SOFTWAREASP A:32 , GLU A:303 , HOH A:2353BINDING SITE FOR RESIDUE EDO A1389
07AC7SOFTWARELEU A:61 , TYR A:115 , GLU A:117 , GLU A:118 , ARG A:258 , HOH A:2170BINDING SITE FOR RESIDUE EDO A1390
08AC8SOFTWAREGLN A:93 , GLN A:104 , VAL A:105 , SER A:106 , HOH A:2110 , HOH A:2164BINDING SITE FOR RESIDUE EDO A1391
09AC9SOFTWARELYS A:71 , ARG A:72 , ARG A:76 , TYR A:149 , PHE A:150 , HOH A:2016 , HOH A:2118BINDING SITE FOR RESIDUE EDO A1392
10BC1SOFTWAREGLY A:24 , PRO A:81 , VAL A:82 , HOH A:2420BINDING SITE FOR RESIDUE EDO A1393
11BC2SOFTWARESER A:153 , HOH A:2212BINDING SITE FOR RESIDUE EDO A1394
12BC3SOFTWARETYR A:15 , THR A:37 , ARG A:272 , 5P7 A:1385 , HOH A:2414BINDING SITE FOR RESIDUE EDO A1395
13BC4SOFTWAREVAL A:59 , ARG A:261 , ARG A:264 , THR A:265BINDING SITE FOR RESIDUE EDO A1396
14BC5SOFTWAREASN A:57 , GLN A:58 , ALA A:60 , LEU A:61 , ARG A:258 , HOH A:2094 , HOH A:2095 , HOH A:2317BINDING SITE FOR RESIDUE EDO A1397
15BC6SOFTWAREARG A:171 , ILE A:173 , HOH A:2423BINDING SITE FOR RESIDUE EDO A1398
16BC7SOFTWAREILE A:172 , ILE A:173 , ASN A:174 , HOH A:2241 , HOH A:2423BINDING SITE FOR RESIDUE EDO A1399

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AQW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AQW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AQW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AQW)

(-) Exons   (0, 0)

(no "Exon" information available for 5AQW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeeeeee..eeee.........ee..eee....eeehhhhhhhhhhhhh.ee.hhhhh......hhhhhhhhhhh..eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh......eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aqw A   3 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILIKST 384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182     ||195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375         
                                                                                                                                                                                                                   188|                                                                                                                                                                                                
                                                                                                                                                                                                                    192
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AQW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AQW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AQW)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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  HS71A_HUMAN | P0DMV8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HS71A_HUMAN | P0DMV8: 1hjo 1s3x 1xqs 2e88 2e8a 2lmg 3a8y 3atu 3atv 3ay9 3d2e 3d2f 3jxu 3lof 3q49 4io8 4j8f 4po2 4wv5 4wv7 5aqx 5aqy 5aqz 5ar0 5bn8 5bn9 5bpl 5bpm 5bpn 5gjj 5mkr 5mks

(-) Related Entries Specified in the PDB File

5aqf FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqg FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqh FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqi FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqj FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqk FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aql FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqm FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqn FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqo FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqp FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqq FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqr FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqs FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqt FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqu FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqv FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqx FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqy FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
5aqz HSP72 WITH ADENOSINE-DERIVED INHIBITOR
5ar0 HSP72 WITH ADENOSINE-DERIVED INHIBITOR