5BPN - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HUMAN HSP70 NBD DOUBLE MUTANT E268Q+R272K.

Authors :   D. Narayanan, R. A. Engh

Date :   28 May 15 (Deposition) - 14 Sep 16 (Release) - 14 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Atp Hydrolysis Activity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Narayanan, A. Pflug, T. Christopeit, P. Kyomuhendo, R. A. Engh
Nucleotide Binding To Variants Of The Hsp70-Nbd.
To Be Published
PubMed: search

Molecule 1 - HEAT SHOCK 70 KDA PROTEIN 1A
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28B+
	Expression System Taxid	:	469008
	Expression System Variant	:	RIL
	Expression System Vector Type	:	PLASMID
	Gene	:	HSPA1A, HSPA1, HSX70
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HEAT SHOCK 70 KDA PROTEIN 1,HSP70.1

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 4)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	PO4	2	Ligand/Ion	PHOSPHATE ION
3	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:13 , LYS A:71 , THR A:204 , PO4 A:402 , TRS A:404	binding site for residue CL A 401
2	AC2	SOFTWARE	GLY A:12 , THR A:13 , THR A:14 , TYR A:15 , GLY A:202 , THR A:204 , CL A:401 , TRS A:404	binding site for residue PO4 A 402
3	AC3	SOFTWARE	LEU A:50 , ILE A:51 , LYS A:126	binding site for residue PO4 A 403
4	AC4	SOFTWARE	ASP A:10 , GLY A:12 , LYS A:71 , GLU A:175 , ASP A:199 , GLY A:201 , VAL A:337 , GLY A:338 , VAL A:369 , CL A:401 , PO4 A:402 , HOH A:532	binding site for residue TRS A 404

(no "SS Bond" information available for 5BPN)

(no "Cis Peptide Bond" information available for 5BPN)

(no "SAP(SNP)/Variant" information available for 5BPN)

(no "PROSITE Motif" information available for 5BPN)

(no "Exon" information available for 5BPN)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...eeeeeeee..eeee.........ee..eee....eeehhhhhhh..hhh.ee.hhhhhh.....hhhhhhhhhhh..eee....eeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh..eeeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bpn A   6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVLNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACQRAKKTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILM 381
                                    15        25        35        45        55   ||   66        76        86        96||     108       118       128       138       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379  
                                                                                59|                                  97|                                                                                     188|                                                                                                                                                                                               
                                                                                 61                                  100                                                                                      190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5BPN)

(no "CATH Domain" information available for 5BPN)

(no "Pfam Domain" information available for 5BPN)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		TRS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5bpn)

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	5bpn
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5bn8	5BN8 CONTAINS THE SAME PROTEIN IN THE APO FORM.
5bn9	5BN9 CONTAINS THE SINGLE MUTANT (R272K) COMPLEXED WITH ADP.
5bpl	5BPL CONTAINS THE SAME PROTEIN SINGLE MUTANT (R272K) COMPLEXED WITH ADP AND PI
5bpm	5BPM CONTAINS THE SAME PROTEIN DOUBLE MUTANT (E268Q+R272K) COMPLEXED WITH UNHYDROLYSED ATP.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (52, 52)

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