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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF GSK3B IN COMPLEX WITH BRD3937
 
Authors :  A. White, D. Lakshminarasimhan, A. Nadupalli, R. K. Suto
Date :  15 Jan 16  (Deposition) - 25 May 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protein Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. F. Wagner, J. A. Bishop, J. P. Gale, X. Shi, M. Walk, J. Ketterman, D. Patnaik, D. Barker, D. Walpita, A. J. Campbell, S. Nguyen, M. Lewis, L. Ross, M. Weiwer, W. F. An, A. R. Germain, P. P. Nag, S. Metkar, T. Kaya, S. Dandapani, D. E. Olson, A. L. Barbe, F. Lazzaro, J. R. Sacher, J. H. Cheah, D. Fei, J. Perez, B. Munoz, M. Palmer, K. Stegmaier, S. L. Schreiber, E. Scolnick, Y. L. Zhang, S. J. Haggarty, E. B. Holson, J. Q. Pan
Inhibitors Of Glycogen Synthase Kinase 3 With Exquisite Kinome-Wide Selectivity And Their Functional Effects.
Acs Chem. Biol. V. 11 1952 2016
PubMed-ID: 27128528  |  Reference-DOI: 10.1021/ACSCHEMBIO.6B00306

(-) Compounds

Molecule 1 - GLYCOGEN SYNTHASE KINASE-3 BETA
    Chains: A, B
    EC Number: 2.7.11.26, 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Plasmid: PACG2T BACULOGOLD
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: GSK3B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GSK-3 BETA,SERINE/THREONINE-PROTEIN KINASE GSK3B

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
165A2Ligand/Ion4-(2-METHOXYPHENYL)-3,7,7-TRIMETHYL-1,6,7,8-TETRAHYDRO-5H-PYRAZOLO[3,4-B]QUINOLIN-5-ONE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
3TPO2Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
165A1Ligand/Ion4-(2-METHOXYPHENYL)-3,7,7-TRIMETHYL-1,6,7,8-TETRAHYDRO-5H-PYRAZOLO[3,4-B]QUINOLIN-5-ONE
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
165A1Ligand/Ion4-(2-METHOXYPHENYL)-3,7,7-TRIMETHYL-1,6,7,8-TETRAHYDRO-5H-PYRAZOLO[3,4-B]QUINOLIN-5-ONE
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:83 , ASP A:133 , TYR A:134 , VAL A:135 , GLN A:185 , ASN A:186 , LEU A:188 , CYS A:199 , HOH A:625 , HOH A:630binding site for residue 65A A 501
2AC2SOFTWAREALA B:83 , ASP B:133 , TYR B:134 , VAL B:135 , GLN B:185 , ASN B:186 , LEU B:188 , CYS B:199 , HOH B:603binding site for residue 65A B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HLP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HLP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HLP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HLP)

(-) Exons   (0, 0)

(no "Exon" information available for 5HLP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......eeeeeeeeeeeeee..eeeeeeee.....eeeeeeeee.....hhhhhhhhhh.......eeeeeee..eeeeeeee...eehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eeee....eeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhh...........hhhhhh....hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.................hhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hlp A  36 KVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSyICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPtREQIREMNPNFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHA 382
                                    45        55        65        75        85        95       105       115   ||  130       140       150       160       170       180       190       200       210     | 220       230       240       250       260       270      |280      |293       303       313       323       333       343       353       363       373         
                                                                                                             119|                                                                                        216-PTR                                                      277-TPO   287|                                                                                           
                                                                                                              125                                                                                                                                                                291                                                                                           


Chain B from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......eeeeeeeeeeeee...eeeeeeee.....eeeeeeee......hhhhhhhhhh.......eeeeeee...eeeeeee...eehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee.hhhhhee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhh........hhhhhh....hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hlp B  36 KVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSyICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPtREQIREMNPNPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHAR 383
                                    45        55        65        75        85        95       105       115   ||  130       140       150       160       170       180       190       200       210     | 220       230       240       250       260       270      |280      |296       306       316       326       336       346       356       366       376       
                                                                                                             119|                                                                                        216-PTR                                                      277-TPO   287|                                                                                         
                                                                                                              125                                                                                                                                                                294
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HLP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HLP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HLP)

(-) Gene Ontology  (146, 146)

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  5hlp
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  GSK3B_HUMAN | P49841
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  2.7.11.1
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  2.7.11.26
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSK3B_HUMAN | P49841: 1gng 1h8f 1i09 1j1b 1j1c 1o6k 1o6l 1o9u 1pyx 1q3d 1q3w 1q41 1q4l 1q5k 1r0e 1uv5 2jdo 2jdr 2jld 2o5k 2ow3 2uw9 2x39 2xh5 3cqu 3cqw 3du8 3e87 3e88 3e8d 3f7z 3f88 3gb2 3i4b 3l1s 3m1s 3mv5 3ow4 3pup 3q3b 3qkk 3say 3sd0 3zdi 3zrk 3zrl 3zrm 4acc 4acd 4acg 4ach 4afj 4b7t 4dit 4ekk 4iq6 4j1r 4j71 4nm0 4nm3 4nm5 4nm7 4ptc 4pte 4ptg 5f94 5f95 5hln 5k5n

(-) Related Entries Specified in the PDB File

5hln