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(-) Description

Title :  AKT1 WITH AMP-PNP
 
Authors :  W. -I. Wu, G. P. A Vigers, T. H. Morales, B. J. Brandhuber
Date :  09 Apr 12  (Deposition) - 23 May 12  (Release) - 23 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Phosphotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Lin, J. Lin, W. I. Wu, J. Ballard, B. B. Lee, S. L. Gloor, G. P. Vigers, T. H. Morales, L. S. Friedman, N. Skelton, B. J. Brandhuber
An Atp-Site On-Off Switch That Restricts Phosphatase Accessibility Of Akt.
Sci. Signal. V. 5 Ra37 2012
PubMed-ID: 22569334  |  Reference-DOI: 10.1126/SCISIGNAL.2002618

(-) Compounds

Molecule 1 - RAC-ALPHA SERINE/THREONINE-PROTEIN KINASE
    ChainsA, B
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Taxid7108
    FragmentUNP RESIDUES 144-480
    GeneAKT1, PKB, RAC
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROTEIN KINASE B, PKB, PROTEIN KINASE B ALPHA, PKB ALPHA, PROTO-ONCOGENE C-AKT, RAC-PK-ALPHA
 
Molecule 2 - GLYCOGEN SYNTHASE KINASE-3 BETA
    ChainsC, D
    EC Number2.7.11.26, 2.7.11.1
    EngineeredYES
    FragmentUNP RESIDUES 3-12
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGSK-3 BETA, SERINE/THREONINE-PROTEIN KINASE GSK3B
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A C 
Biological Unit 2 (1x) B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MN4Ligand/IonMANGANESE (II) ION
3TPO2Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MN-1Ligand/IonMANGANESE (II) ION
3TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MN-1Ligand/IonMANGANESE (II) ION
3TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:161 , VAL A:164 , ALA A:177 , LYS A:179 , MET A:227 , GLU A:228 , ALA A:230 , GLU A:234 , LYS A:276 , ASN A:279 , MET A:281 , THR A:291 , ASP A:292 , PHE A:438 , MN A:502 , MN A:503 , ARG C:4 , SER C:7BINDING SITE FOR RESIDUE ANP A 501
2AC2SOFTWAREASN A:279 , ASP A:292 , ANP A:501BINDING SITE FOR RESIDUE MN A 502
3AC3SOFTWAREASP A:292 , ANP A:501BINDING SITE FOR RESIDUE MN A 503
4AC4SOFTWAREGLY B:159 , VAL B:164 , ALA B:177 , LYS B:179 , MET B:227 , GLU B:228 , ALA B:230 , GLU B:234 , LYS B:276 , GLU B:278 , ASN B:279 , MET B:281 , THR B:291 , ASP B:292 , PHE B:438 , MN B:502 , MN B:503 , ARG D:4 , SER D:7BINDING SITE FOR RESIDUE ANP B 501
5AC5SOFTWAREASN B:279 , ASP B:292 , ANP B:501BINDING SITE FOR RESIDUE MN B 502
6AC6SOFTWAREASP B:292 , ANP B:501 , SER D:7BINDING SITE FOR RESIDUE MN B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EKK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EKK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EKK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EKK)

(-) Exons   (0, 0)

(no "Exon" information available for 4EKK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee...eeeeeeee.....eeeeeeeehhhhhhh.hhhhhhhhhhhhhh........eeeeee...eeeeeee....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..........eee.....eee...................eehhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhh..hhhhhhh........................................ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ekk A 144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKtFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMISERRPHFPQFDYSAS 477
                                   153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303    |  313       323       333       343       353       363       373       383       393       403       413       423       433       443   ||  468         
                                                                                                                                                                                              308-TPO                                                                                                                                    447|              
                                                                                                                                                                                                                                                                                                                                          463              

Chain B from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeeeeee..eeeeeeee.....eeeeeeeehhhhhhh.hhhhhhhhhhhhhh........eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh........hhh.eee.....eee...................eehhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhh..hhhhhhh....................hhhhhh..............ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ekk B 144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKtFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMISERRPHFPQFDYSAS 477
                                   153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303    |  313       323       333       343       353       363       373       383       393       403       413       423       433       443   ||  468         
                                                                                                                                                                                              308-TPO                                                                                                                                    447|              
                                                                                                                                                                                                                                                                                                                                          463              

Chain C from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......ee. Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4ekk C   1 GRPRTTSFAE  10
                                    10

Chain D from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......ee. Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4ekk D   1 GRPRTTSFAE  10
                                    10

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EKK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EKK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EKK)

(-) Gene Ontology  (271, 307)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AKT1_HUMAN | P317491h10 1unp 1unq 1unr 2uvm 2uzr 2uzs 3cqu 3cqw 3mv5 3mvh 3o96 3ocb 3ow4 3qkk 3qkl 3qkm 4ejn 4ekl 4gv1 5kcv
        GSK3B_HUMAN | P498411gng 1h8f 1i09 1j1b 1j1c 1o6k 1o6l 1o9u 1pyx 1q3d 1q3w 1q41 1q4l 1q5k 1r0e 1uv5 2jdo 2jdr 2jld 2o5k 2ow3 2uw9 2x39 2xh5 3cqu 3cqw 3du8 3e87 3e88 3e8d 3f7z 3f88 3gb2 3i4b 3l1s 3m1s 3mv5 3ow4 3pup 3q3b 3qkk 3say 3sd0 3zdi 3zrk 3zrl 3zrm 4acc 4acd 4acg 4ach 4afj 4b7t 4dit 4iq6 4j1r 4j71 4nm0 4nm3 4nm5 4nm7 4ptc 4pte 4ptg 5f94 5f95 5hln 5hlp 5k5n

(-) Related Entries Specified in the PDB File

4ekl