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(-) Description

Title :  CRYSTAL STRUCTURE OF GSK3B IN COMPLEX WITH INHIBITOR 1R
 
Authors :  C. Zhan, Y. Wang, J. Wach, P. Sheehan, C. Zhong, R. Harris, Y. Patskovsky J. Bishop, S. Haggarty, A. Ramek, K. Berry, C. O'Herin, A. N. Koehler, A D. W. Young, S. C. Almo, New York Structural Genomics Research Co (Nysgrc)
Date :  12 Feb 13  (Deposition) - 20 Mar 13  (Release) - 20 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Kinase, Phosphorylation, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Wang, J. Wach, P. Sheehan, C. Zhong, C. Zhan, R. Harris, S. C. Almo, J. Bishop, S. Haggarty, A. Ramek, K. Berry, C. O'Herin, A. N. Koehler, A. W. Hung, D. W. Young
Fragment-Based Approach Using Diversity-Oriented Synthesis Yields A Gsk3B Inhibitor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCOGEN SYNTHASE KINASE-3 BETA
    ChainsA, B
    EC Number2.7.11.26, 2.7.11.1
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Cell LineHIGH FIVE
    Expression System CommonCABBAGE LOOPER
    Expression System PlasmidBD BACULOGOLD PACG2T
    Expression System Taxid7111
    Expression System Vector TypeBACULOVIRUS
    GeneGSK3B
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGSK-3 BETA, SERINE/THREONINE-PROTEIN KINASE GSK3B

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
11JX2Ligand/Ion(2R)-2-METHYL-1,4-DIHYDROPYRIDO[2,3-B]PYRAZIN-3(2H)-ONE
2CL1Ligand/IonCHLORIDE ION
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
4SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
11JX1Ligand/Ion(2R)-2-METHYL-1,4-DIHYDROPYRIDO[2,3-B]PYRAZIN-3(2H)-ONE
2CL-1Ligand/IonCHLORIDE ION
3PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
4SO42Ligand/IonSULFATE ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
11JX1Ligand/Ion(2R)-2-METHYL-1,4-DIHYDROPYRIDO[2,3-B]PYRAZIN-3(2H)-ONE
2CL-1Ligand/IonCHLORIDE ION
3PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
4SO41Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:110 , LEU A:132 , ASP A:133 , TYR A:134 , VAL A:135 , LEU A:188 , HOH A:635 , HOH A:656BINDING SITE FOR RESIDUE 1JX A 501
2AC2SOFTWAREARG A:96 , ARG A:180 , LYS A:205 , ASN A:213 , VAL A:214BINDING SITE FOR RESIDUE SO4 A 502
3AC3SOFTWARETYR A:146 , TYR A:157 , TYR A:161 , PRO B:51BINDING SITE FOR RESIDUE SO4 A 503
4AC4SOFTWARETYR A:157 , PRO A:351 , ASN A:352 , HOH A:694BINDING SITE FOR RESIDUE CL A 504
5AC5SOFTWAREVAL B:110 , LEU B:132 , ASP B:133 , TYR B:134 , VAL B:135 , LEU B:188 , HOH B:645BINDING SITE FOR RESIDUE 1JX B 501
6AC6SOFTWAREARG B:96 , ARG B:180 , LYS B:205 , ASN B:213 , VAL B:214BINDING SITE FOR RESIDUE SO4 B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J71)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly B:47 -Pro B:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J71)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J71)

(-) Exons   (0, 0)

(no "Exon" information available for 4J71)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4j71a_ A: Glycogen synthase kinase-3 beta (Gsk3b)                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.......eeeeeeeeeeeeee..eeeeeeee.....eeeeeeeee.....hhhhhhhhhh.......eeeeeeee......eeeeeeee...eehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eeee....eeee......ee............hhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhh...............hhhhhh....hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhh.................hhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j71 A  36 KVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSyICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHAR 383
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375        
                                                                                                                                                                                                              216-PTR                                                                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4j71b_ B: Glycogen synthase kinase-3 beta (Gsk3b)                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.......eeeeeeeeeeeeee..eeeeeeee.....eeeeeeeee.....hhhhhhhhhh.......eeeeeee.......eeeeeeee...eehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee......eee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhh..............hhhhhh....hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j71 B  36 KVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSyICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHAR 383
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375        
                                                                                                                                                                                                              216-PTR                                                                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J71)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J71)

(-) Gene Ontology  (146, 146)

Asymmetric Unit(hide GO term definitions)

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    Gly B:47 - Pro B:48   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSK3B_HUMAN | P498411gng 1h8f 1i09 1j1b 1j1c 1o6k 1o6l 1o9u 1pyx 1q3d 1q3w 1q41 1q4l 1q5k 1r0e 1uv5 2jdo 2jdr 2jld 2o5k 2ow3 2uw9 2x39 2xh5 3cqu 3cqw 3du8 3e87 3e88 3e8d 3f7z 3f88 3gb2 3i4b 3l1s 3m1s 3mv5 3ow4 3pup 3q3b 3qkk 3say 3sd0 3zdi 3zrk 3zrl 3zrm 4acc 4acd 4acg 4ach 4afj 4b7t 4dit 4ekk 4iq6 4j1r 4nm0 4nm3 4nm5 4nm7 4ptc 4pte 4ptg 5f94 5f95 5hln 5hlp 5k5n

(-) Related Entries Specified in the PDB File

4j1r THE SAME PROTEIN COMPLEXED WITH DIFFERENT INHIBITORS RELATED ID: NYSGRC-030813 RELATED DB: TARGETTRACK