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(-) Description

Title :  CRYSTAL STRUCTURE OF GSK-3BETA COMPLEXED WITH PF-04802367, A HIGHLY SELECTIVE BRAIN-PENETRANT KINASE INHIBITOR
 
Authors :  R. G. Kurumbail, J. S. Chang
Date :  23 May 16  (Deposition) - 21 Sep 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protein Kinase, Alzhimer'S Disease, Tau Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Liang, J. M. Chen, M. D. Normandin, J. S. Chang, G. C. Chang, C. K. Taylor, P. Trapa, M. S. Plummer, K. S. Para, E. L. Conn, L. Lopresti-Morrow, L. F. Lanyon, J. M. Cook, K. E. Richter, C. E. Nolan J. B. Schachter, F. Janat, Y. Che, V. Shanmugasundaram, B. A. Lefker, B. E. Enerson, E. Livni, L. Wang, N. J. Guehl, D. Patnaik, F. F. Wagner, R. Perlis, E. B. Holson, S. J. Haggarty, G. El Fakhri, R. G. Kurumbail, N. Vasdev
Discovery Of A Highly Selective Glycogen Synthase Kinase-3 Inhibitor (Pf-04802367) That Modulates Tau Phosphorylation In The Brain: Translation For Pet Neuroimaging.
Angew. Chem. Int. Ed. Engl. V. 55 9601 2016
PubMed-ID: 27355874  |  Reference-DOI: 10.1002/ANIE.201603797

(-) Compounds

Molecule 1 - GLYCOGEN SYNTHASE KINASE-3 BETA
    Chains: A, B
    EC Number: 2.7.11.26, 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: RESIDUES 28-382
    Gene: GSK3B
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GSK-3 BETA,SERINE/THREONINE-PROTEIN KINASE GSK3B

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
16QH2Ligand/Ion5-(3-CHLORANYL-4-METHOXY-PHENYL)-~{N}-[3-(1,2,4-TRIAZOL-1-YL)PROPYL]-1,3-OXAZOLE-4-CARBOXAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
16QH1Ligand/Ion5-(3-CHLORANYL-4-METHOXY-PHENYL)-~{N}-[3-(1,2,4-TRIAZOL-1-YL)PROPYL]-1,3-OXAZOLE-4-CARBOXAMIDE
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
16QH1Ligand/Ion5-(3-CHLORANYL-4-METHOXY-PHENYL)-~{N}-[3-(1,2,4-TRIAZOL-1-YL)PROPYL]-1,3-OXAZOLE-4-CARBOXAMIDE
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:62 , PHE A:67 , ALA A:83 , LYS A:85 , VAL A:110 , LEU A:132 , ASP A:133 , TYR A:134 , VAL A:135 , PRO A:136 , ARG A:141 , LEU A:188 , ASP A:200 , HOH A:4121binding site for residue 6QH A 4001
2AC2SOFTWAREARG A:96 , ARG A:180 , LYS A:205 , ASN A:213 , VAL A:214binding site for residue SO4 A 4002
3AC3SOFTWAREILE B:62 , PHE B:67 , ALA B:83 , LYS B:85 , LEU B:132 , ASP B:133 , TYR B:134 , VAL B:135 , PRO B:136 , ARG B:141 , LEU B:188 , ASP B:200 , HOH B:540binding site for residue 6QH B 401
4AC4SOFTWAREARG B:96 , ARG B:180 , LYS B:205 , ASN B:213 , VAL B:214binding site for residue SO4 B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K5N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K5N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K5N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K5N)

(-) Exons   (0, 0)

(no "Exon" information available for 5K5N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeeeeeeee...eeeeeeee.....eeeeeeee..hhhhhhhhh.......eeeeeee....eeeeeee...eehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee......eee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhh...........hhhhhh....hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k5n A  36 KVTTVVATPGDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQNRELQIMRKLDHCNIVRLRYFFYSSDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSyICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHA 382
                                    45|       58        68        78        88||     103       113     ||127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287 ||    300       310       320       330       340       350       360       370       380  
                                    45|                                      89|                     119|                                                                                         216-PTR                                                                  289|                                                                                         
                                     49                                       95                      124                                                                                                                                                                   293                                                                                         


Chain B from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeeeeeeee...eeeeeeee.....eeeeeeee..hhhhhhhhh.......eeeeeee........eeeeeee...eehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee......eee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhh........hhhhhh....hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhh.................hhhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k5n B  36 KVTTVVATPGDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSyICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHARI 384
                                    45|       58        68        78        88||     103       113       123       133       143       153       163       173       183       193       203       213  |    223       233       243       253       263       273       283   ||  299       309       319       329       339       349       359       369       379     
                                    45|                                      89|                                                                                                                      216-PTR                                                                287|                                                                                          
                                     49                                       95                                                                                                                                                                                              294
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K5N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K5N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K5N)

(-) Gene Ontology  (146, 146)

Asymmetric Unit(hide GO term definitions)

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  5k5n
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  GSK3B_HUMAN | P49841
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  2.7.11.1
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  2.7.11.26
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSK3B_HUMAN | P49841: 1gng 1h8f 1i09 1j1b 1j1c 1o6k 1o6l 1o9u 1pyx 1q3d 1q3w 1q41 1q4l 1q5k 1r0e 1uv5 2jdo 2jdr 2jld 2o5k 2ow3 2uw9 2x39 2xh5 3cqu 3cqw 3du8 3e87 3e88 3e8d 3f7z 3f88 3gb2 3i4b 3l1s 3m1s 3mv5 3ow4 3pup 3q3b 3qkk 3say 3sd0 3zdi 3zrk 3zrl 3zrm 4acc 4acd 4acg 4ach 4afj 4b7t 4dit 4ekk 4iq6 4j1r 4j71 4nm0 4nm3 4nm5 4nm7 4ptc 4pte 4ptg 5f94 5f95 5hln 5hlp

(-) Related Entries Specified in the PDB File

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