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(-) Description

Title :  MYOSIN VI MOTOR DOMAIN IN THE PI RELEASE STATE, SPACE GROUP P212121 - SHORTLY SOAKED WITH PO4
 
Authors :  T. Isabet, H. Benisty, P. Llinas, H. L. Sweeney, A. Houdusse
Date :  12 May 14  (Deposition) - 29 Apr 15  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Motor Protein, Pi Release State, Myosin Vi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Llinas, T. Isabet, L. Song, V. Ropars, B. Zong, H. Benisty, S. Sirigu C. Morris, C. Kikuti, D. Safer, H. L. Sweeney, A. Houdusse
How Actin Initiates The Motor Activity Of Myosin.
Dev. Cell V. 33 401 2015
PubMed-ID: 25936506  |  Reference-DOI: 10.1016/J.DEVCEL.2015.03.025

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VI
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 2-789
    Gene: MYO6
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL9Ligand/IonGLYCEROL
3MG1Ligand/IonMAGNESIUM ION
4PO41Ligand/IonPHOSPHATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:477 , GLN A:481 , PHE A:484 , ARG A:667 , SER A:692 , HOH A:979 , HOH A:1424binding site for residue GOL A 801
02AC2SOFTWARESER A:153 , THR A:197 , ARG A:199 , SER A:203 , ARG A:205 , GLU A:461 , HOH A:999 , HOH A:1208 , HOH A:1332 , HOH A:1333 , HOH A:1389binding site for residue PO4 A 802
03AC3SOFTWARETHR A:158 , SER A:204 , ADP A:804 , HOH A:952 , HOH A:953 , HOH A:1232binding site for residue MG A 803
04AC4SOFTWAREILE A:86 , ASN A:98 , PRO A:99 , TYR A:100 , PHE A:101 , TYR A:107 , GLU A:152 , SER A:153 , GLY A:154 , ALA A:155 , GLY A:156 , LYS A:157 , THR A:158 , GLU A:159 , PHE A:163 , ASN A:200 , LEU A:310 , MG A:803 , HOH A:952 , HOH A:953 , HOH A:955 , HOH A:977 , HOH A:987 , HOH A:1040 , HOH A:1051 , HOH A:1109 , HOH A:1232binding site for residue ADP A 804
05AC5SOFTWAREALA A:253 , GLY A:254 , ALA A:255 , GLN A:290 , ILE A:291 , LEU A:292 , ARG A:295 , HIS A:314 , HOH A:1298binding site for residue GOL A 805
06AC6SOFTWAREHIS A:346 , ASN A:349 , TYR A:374 , HOH A:998 , HOH A:1159binding site for residue GOL A 806
07AC7SOFTWAREARG A:667 , SER A:692 , MET A:694 , GOL A:808 , HOH A:995binding site for residue GOL A 807
08AC8SOFTWAREGLN A:481 , PHE A:484 , ASN A:485 , SER A:692 , GLY A:693 , MET A:694 , GOL A:807binding site for residue GOL A 808
09AC9SOFTWAREGLY A:121 , THR A:122 , ASP A:288 , LYS A:289 , ILE A:291 , GLN A:293 , LYS A:296 , HOH A:930binding site for residue GOL A 809
10AD1SOFTWAREASP A:102 , TYR A:107 , ARG A:166 , HOH A:977 , HOH A:1302binding site for residue GOL A 810
11AD2SOFTWAREASN A:284 , LYS A:285 , ASP A:288 , GLY A:304 , SER A:305 , LYS A:307 , HOH A:1132binding site for residue GOL A 811
12AD3SOFTWAREGLU A:211 , HIS A:213 , LYS A:657 , HOH A:1399binding site for residue GOL A 812

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PJN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PJN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PJN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PJN)

(-) Exons   (0, 0)

(no "Exon" information available for 4PJN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:761
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeeee..eeeeee.......eeehhhhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..eeee.....eeee...hhhhhhhhhhhhh.hhhhhhhhhheeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....eehhhhh.hhhhh..hhh.eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pjn A   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFELSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLI 789
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394||     413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788 
                                                                                                                                                                                                                                                                                                                                                                                                                                395|                                                                                                                                                                                                                      622|                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                 405                                                                                                                                                                                                                       638
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PJN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PJN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PJN)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F1RQI7_PIG | F1RQI7: 4dbp 4dbq 4dbr
UniProtKB/TrEMBL
        F1RQI7_PIG | F1RQI7: 4e7s 4e7z 4pfo 4pfp 4pjj 4pjl 4pjm 4pk4

(-) Related Entries Specified in the PDB File

4fpo 4pjl 4pjn