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(-) Description

Title :  MYOSIN VI MOTOR DOMAIN IN THE PI RELEASE STATE, SPACE GROUP P212121 - SOAKED WITH PO4 - LOCATED IN THE ACTIVE SITE
 
Authors :  T. Isabet, H. Benisty, P. Llinas, H. L. Sweeney, A. Houdusse
Date :  12 May 14  (Deposition) - 29 Apr 15  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Motor Protein, Myosin Vi, Motor Domain, Pi Release State (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Llinas, T. Isabet, L. Song, V. Ropars, B. Zong, H. Benisty, S. Sirigu C. Morris, C. Kikuti, D. Safer, H. L. Sweeney, A. Houdusse
How Actin Initiates The Motor Activity Of Myosin.
Dev. Cell V. 33 401 2015
PubMed-ID: 25936506  |  Reference-DOI: 10.1016/J.DEVCEL.2015.03.025

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VI
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: MYO6
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL7Ligand/IonGLYCEROL
3IPA2Ligand/IonISOPROPYL ALCOHOL
4MG1Ligand/IonMAGNESIUM ION
5PO41Ligand/IonPHOSPHATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:153 , LYS A:157 , ASN A:200 , SER A:203 , SER A:204 , ALA A:458 , MG A:802 , ADP A:803 , HOH A:1004 , HOH A:1018 , HOH A:1204 , HOH A:1283binding site for residue PO4 A 801
02AC2SOFTWARETHR A:158 , SER A:204 , PO4 A:801 , ADP A:803 , HOH A:1004 , HOH A:1018binding site for residue MG A 802
03AC3SOFTWAREILE A:86 , ASN A:98 , PRO A:99 , TYR A:100 , PHE A:101 , TYR A:107 , GLU A:152 , SER A:153 , GLY A:154 , ALA A:155 , GLY A:156 , LYS A:157 , THR A:158 , GLU A:159 , PHE A:163 , ASN A:200 , LEU A:310 , PO4 A:801 , MG A:802 , HOH A:968 , HOH A:1004 , HOH A:1005 , HOH A:1018 , HOH A:1196 , HOH A:1201 , HOH A:1279 , HOH A:1308binding site for residue ADP A 803
04AC4SOFTWAREGLY A:121 , THR A:122 , ASP A:288 , LYS A:289 , ILE A:291 , GLN A:293 , LYS A:296 , HOH A:920binding site for residue GOL A 804
05AC5SOFTWAREALA A:253 , GLY A:254 , ALA A:255 , GLN A:290 , ILE A:291 , LEU A:292 , ARG A:295 , HIS A:314binding site for residue GOL A 805
06AC6SOFTWAREARG A:667 , SER A:692 , MET A:694 , GOL A:810 , HOH A:960binding site for residue GOL A 806
07AC7SOFTWAREASP A:288 , GLY A:304 , SER A:305 , LYS A:307binding site for residue IPA A 807
08AC8SOFTWAREASN A:477 , LEU A:480 , GLN A:481binding site for residue IPA A 808
09AC9SOFTWAREGLN A:17 , PHE A:41 , ARG A:613 , HOH A:913 , HOH A:1386binding site for residue GOL A 809
10AD1SOFTWAREGLN A:481 , PHE A:484 , ASN A:485 , LEU A:489 , SER A:692 , GLY A:693 , MET A:694 , VAL A:697 , GOL A:806binding site for residue GOL A 810
11AD2SOFTWAREGLU A:211 , PHE A:445 , LYS A:657binding site for residue GOL A 811
12AD3SOFTWARESER A:389 , THR A:392 , ARG A:393 , LEU A:411 , SER A:604 , LEU A:605 , HOH A:1298 , HOH A:1461binding site for residue GOL A 812

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PJM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PJM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PJM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PJM)

(-) Exons   (0, 0)

(no "Exon" information available for 4PJM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:753
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeeee..eeeeee.......eeee.hhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..eeee.....eeee...hhhhhhhhhhhhh.hhhhhhhhhheee...eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....eehhhhh.hhhhh....eeeee....eeeee..hhhhhh....hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhh.hhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pjm A   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFELSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLI 789
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174|      189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389      |409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559    || 571       581       591       601       611       621||     646       656       666       676       686       696       706       716       726       736       746       756       766       776       786   
                                                                                                                                                                                                   174|                                                                                                                                                                                                                     396|                                                                                                                                                          564|                                                    622|                                                                                                                                                       
                                                                                                                                                                                                    180                                                                                                                                                                                                                      407                                                                                                                                                           567                                                     638
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PJM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PJM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PJM)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F1RQI7_PIG | F1RQI7: 4dbp 4dbq 4dbr
UniProtKB/TrEMBL
        F1RQI7_PIG | F1RQI7: 4e7s 4e7z 4pfo 4pfp 4pjj 4pjl 4pjn 4pk4

(-) Related Entries Specified in the PDB File

4pfo