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(-) Description

Title :  MYOSIN VI MOTOR DOMAIN A458E MUTANT IN THE PI RELEASE STATE, SPACE GROUP P212121 -
 
Authors :  T. Isabet, H. Benisty, P. Llinas, H. L. Sweeney, A. Houdusse
Date :  12 May 14  (Deposition) - 29 Apr 15  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Motor Protein, Myosin Vi, Motor Domain, Pi Release State (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Llinas, T. Isabet, L. Song, V. Ropars, B. Zong, H. Benisty, S. Sirigu C. Morris, C. Kikuti, D. Safer, H. L. Sweeney, A. Houdusse
How Actin Initiates The Motor Activity Of Myosin.
Dev. Cell V. 33 401 2015
PubMed-ID: 25936506  |  Reference-DOI: 10.1016/J.DEVCEL.2015.03.025

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VI
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 2-789
    Gene: MYO6
    Mutation: YES
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: UNCONVENTIONAL MYOSIN-6

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL12Ligand/IonGLYCEROL
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:158 , SER A:204 , GLU A:458 , ADP A:802 , HOH A:961 , HOH A:962 , HOH A:964binding site for residue MG A 801
02AC2SOFTWAREASN A:98 , PRO A:99 , TYR A:100 , PHE A:101 , ASP A:102 , TYR A:107 , GLU A:152 , GLY A:154 , ALA A:155 , GLY A:156 , LYS A:157 , THR A:158 , GLU A:159 , PHE A:163 , ASN A:200 , LEU A:310 , MG A:801 , HOH A:961 , HOH A:962 , HOH A:964 , HOH A:965 , HOH A:970 , HOH A:980 , HOH A:1056 , HOH A:1058 , HOH A:1079binding site for residue ADP A 802
03AC3SOFTWAREARG A:667 , SER A:692 , GLY A:693 , MET A:694 , HOH A:979 , HOH A:1448binding site for residue GOL A 803
04AC4SOFTWAREGLY A:459 , ASN A:477 , GLN A:481 , PHE A:484 , ARG A:667 , HOH A:1225 , HOH A:1308 , HOH A:1369 , HOH A:1435binding site for residue GOL A 804
05AC5SOFTWAREASN A:284 , THR A:287 , ASP A:312 , ARG A:319 , HOH A:1147binding site for residue GOL A 805
06AC6SOFTWAREGLY A:121 , THR A:122 , ASP A:288 , LYS A:289 , ILE A:291 , GLN A:293 , LYS A:296 , GOL A:811binding site for residue GOL A 806
07AC7SOFTWAREALA A:253 , GLY A:254 , ALA A:255 , GLN A:290 , ILE A:291 , LEU A:292 , ARG A:295 , HIS A:314binding site for residue GOL A 807
08AC8SOFTWAREPRO A:187 , GLU A:190 , ASN A:202 , ARG A:250 , LEU A:310 , LEU A:311 , HOH A:1063 , HOH A:1167binding site for residue GOL A 808
09AC9SOFTWAREASN A:284 , LYS A:285 , ASP A:288 , GLY A:304 , SER A:305 , LYS A:307binding site for residue GOL A 809
10AD1SOFTWARESER A:389 , THR A:392 , ARG A:393 , LEU A:411 , SER A:604 , LEU A:605 , HOH A:1133binding site for residue GOL A 810
11AD2SOFTWARESER A:64 , GLY A:121 , LYS A:289 , GOL A:806 , HOH A:909 , HOH A:1007 , HOH A:1008binding site for residue GOL A 811
12AD3SOFTWARELEU A:143 , ARG A:487 , SER A:660 , THR A:661 , HOH A:1424binding site for residue GOL A 812
13AD4SOFTWAREGLU A:211 , LYS A:657 , HOH A:1431binding site for residue GOL A 813
14AD5SOFTWAREHIS A:346 , ASN A:349 , GLN A:370binding site for residue GOL A 814

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PJL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PJL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PJL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PJL)

(-) Exons   (0, 0)

(no "Exon" information available for 4PJL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:760
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeeee..eeeeee.......eeehhhhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhh..........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..eeee.....eeee...hhhhhhhhhhhhh.hhhhhhhhhheee...eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....eehhhhh.hhhhh..hhh.eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhh....hhhhhhhh..eeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pjl A   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIEGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFELSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLI 789
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394||     414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789
                                                                                                                                                                                                                                                                                                                                                                                                                                395|                                                                                                                                                                                                                     622|                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                 406                                                                                                                                                                                                                      638
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PJL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PJL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PJL)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F1RQI7_PIG | F1RQI7: 4dbp 4dbq 4dbr
UniProtKB/TrEMBL
        F1RQI7_PIG | F1RQI7: 4e7s 4e7z 4pfo 4pfp 4pjj 4pjm 4pjn 4pk4

(-) Related Entries Specified in the PDB File

4pfo