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(-) Description

Title :  MYOSIN VI (MD) PRE-POWERSTROKE STATE, P21 CRYSTAL FORM
 
Authors :  T. Isabet, H. L. Sweeney, A. Houdusse
Date :  19 Mar 12  (Deposition) - 19 Sep 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Myosin, Molecular Motor, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Menetrey, T. Isabet, V. Ropars, M. Mukherjea, O. Pylypenko, X. Liu, J. Perez, P. Vachette, H. L. Sweeney, A. M. Houdusse
Processive Steps In The Reverse Direction Require Uncouplin Of The Lead Head Lever Arm Of Myosin Vi.
Mol. Cell V. 48 75 2012
PubMed-ID: 22940248  |  Reference-DOI: 10.1016/J.MOLCEL.2012.07.034

(-) Compounds

Molecule 1 - MYOSIN-VI
    Chains: A, B
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Strain: SF9 CELL
    Expression System Taxid: 10469
    Gene: MYO6
    Organism Common: PIGS,SWINE,WILD BOAR
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL6Ligand/IonGLYCEROL
3MG2Ligand/IonMAGNESIUM ION
4VO42Ligand/IonVANADATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL4Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4VO41Ligand/IonVANADATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL2Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4VO41Ligand/IonVANADATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:98 , PRO A:99 , TYR A:100 , PHE A:101 , ASP A:102 , TYR A:107 , SER A:153 , GLY A:154 , ALA A:155 , GLY A:156 , LYS A:157 , THR A:158 , GLU A:159 , PHE A:163 , ASN A:200 , LEU A:310 , VO4 A:802 , MG A:803 , HOH A:954 , HOH A:973 , HOH A:977 , HOH A:982 , HOH A:996 , HOH A:1014 , HOH A:1035BINDING SITE FOR RESIDUE ADP A 801
02AC2SOFTWARESER A:153 , GLY A:154 , LYS A:157 , ASN A:200 , SER A:203 , SER A:204 , ALA A:458 , GLY A:459 , ADP A:801 , MG A:803 , HOH A:979 , HOH A:1035BINDING SITE FOR RESIDUE VO4 A 802
03AC3SOFTWARETHR A:158 , SER A:204 , ADP A:801 , VO4 A:802 , HOH A:933 , HOH A:1035BINDING SITE FOR RESIDUE MG A 803
04AC4SOFTWARELYS A:162 , PRO A:187 , GLU A:190 , ASN A:202 , ARG A:250 , LEU A:310 , ASP A:316 , HOH A:1086BINDING SITE FOR RESIDUE GOL A 804
05AC5SOFTWAREGLY A:151 , PHE A:582 , CYS A:668 , GLN A:688 , CYS A:691 , SER A:692 , HOH A:965 , HOH A:992 , HOH A:1064BINDING SITE FOR RESIDUE GOL A 805
06AC6SOFTWAREASP A:288 , GLY A:304 , SER A:305 , LYS A:307 , HOH A:1113BINDING SITE FOR RESIDUE GOL A 806
07AC7SOFTWAREALA A:253 , GLY A:254 , ALA A:255 , GLN A:290 , LEU A:292 , ARG A:295BINDING SITE FOR RESIDUE GOL A 807
08AC8SOFTWAREASN B:98 , PRO B:99 , TYR B:100 , PHE B:101 , TYR B:107 , GLY B:154 , ALA B:155 , GLY B:156 , LYS B:157 , THR B:158 , GLU B:159 , PHE B:163 , ASN B:200 , ASN B:202 , LEU B:310 , VO4 B:802 , MG B:803 , HOH B:902 , HOH B:917 , HOH B:963 , HOH B:971 , HOH B:1002 , HOH B:1026 , HOH B:1082BINDING SITE FOR RESIDUE ADP B 801
09AC9SOFTWARESER B:153 , GLY B:154 , LYS B:157 , ASN B:200 , SER B:203 , SER B:204 , ALA B:458 , GLY B:459 , ADP B:801 , MG B:803 , HOH B:958 , HOH B:971BINDING SITE FOR RESIDUE VO4 B 802
10BC1SOFTWARETHR B:158 , SER B:204 , ADP B:801 , VO4 B:802 , HOH B:971 , HOH B:983BINDING SITE FOR RESIDUE MG B 803
11BC2SOFTWAREASN B:284 , LYS B:285 , ASP B:288 , GLY B:304 , SER B:305 , LYS B:307BINDING SITE FOR RESIDUE GOL B 804
12BC3SOFTWAREPRO A:12 , ARG B:618BINDING SITE FOR RESIDUE GOL B 805

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E7Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E7Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E7Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E7Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4E7Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:759
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeeee..eeeeee.......eeee.hhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eee.......eee...hhhhhhhhhhhhh.hhhhhhhhhhee......ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....eehhhhh.hhhhh..hhh.eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e7z A   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFELSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 788
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174||     185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395||     414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779         
                                                                                                                                                                                                    175|                                                                                                                                                                                                                        396|                                                                                                                                                                                                                     622|                                                                                                                                                      
                                                                                                                                                                                                     177                                                                                                                                                                                                                         406                                                                                                                                                                                                                      638                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:745
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeeee..eeeeee.......eeehhhhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhh..........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...ee...ee...hhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....eehhhhh.hhhhh..hhh.eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhh......eeee...............hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e7z B   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFELSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 788
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354|      370       380       390   ||  414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       639       649       659       669       679       689       699       709       719 ||    733       743       753       763       773       783     
                                                                                                                                                                                                                                                                                                                                                                                       354|                              394|                                                                                                                                                                                                                  622|                                                                                721|                                                              
                                                                                                                                                                                                                                                                                                                                                                                        361                               409                                                                                                                                                                                                                   638                                                                                 726
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E7Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E7Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E7Z)

(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F1RQI7_PIG | F1RQI7: 4dbp 4dbq 4dbr
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        F1RQI7_PIG | F1RQI7: 4e7s 4pfo 4pfp 4pjj 4pjl 4pjm 4pjn 4pk4

(-) Related Entries Specified in the PDB File

4e7s