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(-) Description

Title :  MYOSIN VI MOTOR DOMAIN IN THE PI RELEASE STATE (WITH PI) SPACE GROUP P21
 
Authors :  T. Isabet, H. Benisty, P. Llinas, H. L. Sweeney, A. Houdusse
Date :  30 Apr 14  (Deposition) - 29 Apr 15  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Motor Protein, Pi Release State, Motor Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Llinas, T. Isabet, L. Song, V. Ropars, B. Zong, H. Benisty, S. Sirigu C. Morris, C. Kikuti, D. Safer, H. L. Sweeney, A. Houdusse
How Actin Initiates The Motor Activity Of Myosin.
Dev. Cell V. 33 401 2015
PubMed-ID: 25936506  |  Reference-DOI: 10.1016/J.DEVCEL.2015.03.025

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VI
    Chains: A, C
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 2-789
    Gene: MYO6
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3PGO1Ligand/IonS-1,2-PROPANEDIOL
4PO43Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:158 , SER A:204 , ADP A:802 , PO4 A:804 , HOH A:914 , HOH A:915binding site for residue MG A 801
2AC2SOFTWAREASN A:98 , PRO A:99 , TYR A:100 , PHE A:101 , TYR A:107 , GLU A:152 , GLY A:154 , ALA A:155 , GLY A:156 , LYS A:157 , THR A:158 , GLU A:159 , PHE A:163 , ASN A:200 , MG A:801 , PO4 A:804 , HOH A:914 , HOH A:915 , HOH A:917 , HOH A:946 , HOH A:951 , HOH A:956 , HOH A:988binding site for residue ADP A 802
3AC3SOFTWAREGLN A:481 , ASN A:485 , SER A:692 , GLY A:693 , MET A:694 , PO4 A:805binding site for residue PGO A 803
4AC4SOFTWARESER A:153 , LYS A:157 , ASN A:200 , SER A:203 , SER A:204 , MG A:801 , ADP A:802 , HOH A:914 , HOH A:915 , HOH A:1054binding site for residue PO4 A 804
5AC5SOFTWAREILE A:93 , SER A:150 , PHE A:484 , PHE A:665 , ARG A:667 , SER A:692 , MET A:694 , PGO A:803 , HOH A:1020binding site for residue PO4 A 805
6AC6SOFTWAREASN C:98 , PRO C:99 , TYR C:100 , PHE C:101 , TYR C:107 , GLU C:152 , SER C:153 , GLY C:154 , ALA C:155 , GLY C:156 , LYS C:157 , THR C:158 , GLU C:159 , PHE C:163 , ASN C:200 , PO4 C:802 , MG C:803 , HOH C:915 , HOH C:916 , HOH C:918 , HOH C:921 , HOH C:958 , HOH C:971 , HOH C:1037 , HOH C:1074binding site for residue ADP C 801
7AC7SOFTWARESER C:153 , LYS C:157 , SER C:203 , SER C:204 , ALA C:458 , GLY C:459 , ADP C:801 , MG C:803 , HOH C:915 , HOH C:916 , HOH C:970binding site for residue PO4 C 802
8AC8SOFTWARETHR C:158 , SER C:204 , ADP C:801 , PO4 C:802 , HOH C:915 , HOH C:916binding site for residue MG C 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PFP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:357 -Thr A:358

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PFP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PFP)

(-) Exons   (0, 0)

(no "Exon" information available for 4PFP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:760
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeeee..eeeeee.......eeee.hhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhh...hhhhh............hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eee.......eee...hhhhhhhhhhhhh.hhhhhhhhhheee...eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....eehhhhh.hhhhh..hhh.eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhh....hhhhhhh...eeeehhhhhhhhhh..hhhhhh.hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pfp A   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFELSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLI 789
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394||     414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789
                                                                                                                                                                                                                                                                                                                                                                                                                                395|                                                                                                                                                                                                                     622|                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                 406                                                                                                                                                                                                                      638                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:766
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeee...eeeeee.......eeee.hhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhh...hhhhh............hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eee.......eee...hhhhhhhhhhhh..hhhhhhhhhheeee.....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhh....hhhhhhhhhhhhh.....eehhhhh.hhhhh..hhh.eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhh....eeeehhhhhhhhh...hhhhhh.hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pfp C   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFEGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLI 789
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394  ||   410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620 ||    643       653       663       673       683       693       703       713       723       733       743       753       763       773       783      
                                                                                                                                                                                                                                                                                                                                                                                                                                  397|                                                                                                                                                                                                                       622|                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                   404                                                                                                                                                                                                                        636
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PFP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PFP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PFP)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F1RQI7_PIG | F1RQI7: 4dbp 4dbq 4dbr
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        F1RQI7_PIG | F1RQI7: 4e7s 4e7z 4pfo 4pjj 4pjl 4pjm 4pjn 4pk4

(-) Related Entries Specified in the PDB File

4pfo