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(-) Description

Title :  MYOSIN VI D23R I24R R569E (MD) PRE-POWERSTROKE STATE
 
Authors :  T. Isabet, H. L. Sweeney, A. Houdusse
Date :  19 Mar 12  (Deposition) - 19 Sep 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Myosin, Molecular Motor, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Menetrey, T. Isabet, V. Ropars, M. Mukherjea, O. Pylypenko, X. Liu, J. Perez, P. Vachette, H. L. Sweeney, A. M. Houdusse
Processive Steps In The Reverse Direction Require Uncouplin Of The Lead Head Lever Arm Of Myosin Vi.
Mol. Cell V. 48 75 2012
PubMed-ID: 22940248  |  Reference-DOI: 10.1016/J.MOLCEL.2012.07.034

(-) Compounds

Molecule 1 - MYOSIN-VI
    Chains: A, B
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Cell: SF9 CELLS
    Expression System Taxid: 10469
    Gene: MYO6
    Mutation: YES
    Organism Common: PIGS,SWINE,WILD BOAR
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric Unit (5, 13)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL6Ligand/IonGLYCEROL
3MG2Ligand/IonMAGNESIUM ION
4PO41Ligand/IonPHOSPHATE ION
5VO42Ligand/IonVANADATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL4Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
5VO41Ligand/IonVANADATE ION
Biological Unit 2 (4, 5)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL2Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4PO41Ligand/IonPHOSPHATE ION
5VO41Ligand/IonVANADATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:98 , PRO A:99 , PHE A:101 , TYR A:107 , GLY A:154 , ALA A:155 , GLY A:156 , LYS A:157 , THR A:158 , GLU A:159 , PHE A:163 , ASN A:200 , LEU A:310 , VO4 A:802 , MG A:803 , HOH A:902 , HOH A:904 , HOH A:918 , HOH A:978 , HOH A:1023BINDING SITE FOR RESIDUE ADP A 801
02AC2SOFTWARESER A:153 , GLY A:154 , LYS A:157 , ASN A:200 , SER A:203 , SER A:204 , GLY A:459 , ADP A:801 , MG A:803 , HOH A:902 , HOH A:903BINDING SITE FOR RESIDUE VO4 A 802
03AC3SOFTWARETHR A:158 , SER A:204 , ADP A:801 , VO4 A:802 , HOH A:901 , HOH A:902BINDING SITE FOR RESIDUE MG A 803
04AC4SOFTWAREGLY A:304 , SER A:305 , LYS A:307BINDING SITE FOR RESIDUE GOL A 804
05AC5SOFTWAREARG A:487 , GLU A:491 , HOH A:976 , LYS B:552BINDING SITE FOR RESIDUE GOL A 805
06AC6SOFTWAREARG A:262 , ARG A:339 , GLU A:377 , SER B:114 , HOH B:1000 , HOH B:1038BINDING SITE FOR RESIDUE GOL A 806
07AC7SOFTWAREGLY A:151 , GLU A:152 , PHE A:582 , CYS A:691 , HOH A:906 , HOH A:1058 , HOH A:1137 , HOH A:1145BINDING SITE FOR RESIDUE GOL A 807
08AC8SOFTWAREASN B:98 , PRO B:99 , TYR B:100 , PHE B:101 , TYR B:107 , GLY B:154 , ALA B:155 , GLY B:156 , LYS B:157 , THR B:158 , GLU B:159 , PHE B:163 , ASN B:200 , LEU B:310 , VO4 B:802 , MG B:803 , HOH B:902 , HOH B:905 , HOH B:909 , HOH B:967BINDING SITE FOR RESIDUE ADP B 801
09AC9SOFTWARESER B:153 , GLY B:154 , LYS B:157 , ASN B:200 , SER B:203 , SER B:204 , GLY B:459 , ADP B:801 , MG B:803 , HOH B:901 , HOH B:902 , HOH B:903BINDING SITE FOR RESIDUE VO4 B 802
10BC1SOFTWARETHR B:158 , SER B:204 , ADP B:801 , VO4 B:802 , HOH B:901 , HOH B:902BINDING SITE FOR RESIDUE MG B 803
11BC2SOFTWAREPHE B:463 , ASN B:466 , HIS B:568 , ALA B:585 , VAL B:586 , CYS B:587 , HOH B:1103BINDING SITE FOR RESIDUE PO4 B 804
12BC3SOFTWAREGLY B:151 , PHE B:582 , ALA B:583 , CYS B:691 , HOH B:1095BINDING SITE FOR RESIDUE GOL B 805
13BC4SOFTWAREALA B:253 , GLY B:254 , GLN B:290 , LEU B:292 , ARG B:295 , HIS B:314BINDING SITE FOR RESIDUE GOL B 806

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E7S)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:3 -Gly A:4

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E7S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E7S)

(-) Exons   (0, 0)

(no "Exon" information available for 4E7S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:762
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee...eeeeeeeeee...eeeeee.......eeee.hhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...............hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..eee.......eee...hhhhhhhhhhhhh.hhhhhhhhhheee....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....ee..............eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhh........hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhh.eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4e7s A   2 EDGKPVWAPHPTDGFQVGNIVRRGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLENIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLI 789
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391    || 410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560    || 573       583       593       603       613       623|      647       657       667       677       687       697       707       717       727       737       747       757       767       777       787  
                                                                                                                                                                                                                                                                                                                                                                                                                                    396|                                                                                                                                                            565|                                                   623|                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                     406                                                                                                                                                             569                                                    638                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:752
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeee...eeeeee.......eeee.hhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..eee.....eee...hhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhh.....eehhhhhhhhhhh......eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhheeeeeeee...........hhhhhhhhhhhhhhhhhhhhhh....eeeehhhhhhhhhh....hhhhhhhhhhhhhhhhhh..hhh.eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e7s B   5 KPVWAPHPTDGFQVGNIVRRGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHENIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 788
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354   ||  366       376       386      |410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620 ||    646       656       666       676       686       696       706       716       726       736       746       756       766       776       786  
                                                                                                                                                                                                                                                                                                                                                                                           358|                             393|                                                                                                                                                                                                                   622|                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                            361                              408                                                                                                                                                                                                                    639
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E7S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E7S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E7S)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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  4e7s
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F1RQI7_PIG | F1RQI7: 4dbp 4dbq 4dbr
UniProtKB/TrEMBL
        F1RQI7_PIG | F1RQI7: 4e7z 4pfo 4pfp 4pjj 4pjl 4pjm 4pjn 4pk4

(-) Related Entries Specified in the PDB File

4e7z