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(-) Description

Title :  MYOSIN VI MOTOR DOMAIN IN THE PI RELEASE STATE, SPACE GROUP P212121
 
Authors :  T. Isabet, H. Benisty, P. Llinas, H. L. Sweeney, A. Houdusse
Date :  30 Apr 14  (Deposition) - 29 Apr 15  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Myosin, Motor Domain, Pi Release State, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Llinas, T. Isabet, L. Song, V. Ropars, B. Zong, H. Benisty, S. Sirigu C. Morris, C. Kikuti, D. Safer, H. L. Sweeney, A. Houdusse
How Actin Initiates The Motor Activity Of Myosin.
Dev. Cell V. 33 401 2015
PubMed-ID: 25936506  |  Reference-DOI: 10.1016/J.DEVCEL.2015.03.025

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VI
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 2-789
    Gene: MYO6
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL14Ligand/IonGLYCEROL
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:158 , SER A:204 , ADP A:802 , HOH A:986 , HOH A:987 , HOH A:988binding site for residue MG A 801
02AC2SOFTWAREASN A:98 , PRO A:99 , TYR A:100 , PHE A:101 , TYR A:107 , GLU A:152 , GLY A:154 , ALA A:155 , GLY A:156 , LYS A:157 , THR A:158 , GLU A:159 , PHE A:163 , ASN A:200 , LEU A:310 , MG A:801 , HOH A:987 , HOH A:988 , HOH A:1022 , HOH A:1037 , HOH A:1048 , HOH A:1062 , HOH A:1099 , HOH A:1218binding site for residue ADP A 802
03AC3SOFTWAREILE A:93 , ARG A:667 , SER A:692 , MET A:694 , GOL A:806 , HOH A:1307binding site for residue GOL A 803
04AC4SOFTWAREGLY A:121 , THR A:122 , ASP A:288 , LYS A:289 , ILE A:291 , GLN A:293 , LYS A:296 , GOL A:810binding site for residue GOL A 804
05AC5SOFTWAREASP A:102 , TYR A:107 , PHE A:163 , HOH A:1022 , HOH A:1324binding site for residue GOL A 805
06AC6SOFTWAREGLN A:481 , PHE A:484 , ASN A:485 , SER A:692 , GLY A:693 , MET A:694 , GOL A:803 , HOH A:1416binding site for residue GOL A 806
07AC7SOFTWAREALA A:253 , GLY A:254 , ALA A:255 , GLN A:290 , ILE A:291 , LEU A:292 , ARG A:295 , HIS A:314 , HOH A:945binding site for residue GOL A 807
08AC8SOFTWARESER A:389 , THR A:392 , ARG A:393 , LEU A:411 , ALA A:419 , HIS A:602 , SER A:604 , HOH A:1190binding site for residue GOL A 808
09AC9SOFTWAREGLU A:211 , PHE A:224 , PHE A:445 , LYS A:657 , HOH A:1449binding site for residue GOL A 809
10AD1SOFTWARESER A:64 , GLY A:121 , GOL A:804 , HOH A:905 , HOH A:910 , HOH A:1106 , HOH A:1185 , HOH A:1525binding site for residue GOL A 810
11AD2SOFTWAREHIS A:346 , ASN A:349 , ALA A:371 , HOH A:1403binding site for residue GOL A 811
12AD3SOFTWAREARG A:487 , ARG A:659 , SER A:660 , THR A:661 , HOH A:1489binding site for residue GOL A 812
13AD4SOFTWAREARG A:80 , ASP A:84 , ARG A:85 , ILE A:86 , TYR A:87 , PRO A:124 , PRO A:125 , HOH A:1298binding site for residue GOL A 813
14AD5SOFTWAREASN A:477 , LEU A:480 , GLN A:481 , ARG A:667 , HOH A:1006 , HOH A:1055 , HOH A:1173 , HOH A:1262 , HOH A:1272 , HOH A:1416binding site for residue GOL A 814
15AD6SOFTWAREASN A:284 , LYS A:285 , ASP A:288 , TYR A:300 , GLY A:304 , SER A:305 , HOH A:996binding site for residue GOL A 815
16AD7SOFTWARELEU A:229 , LEU A:230 , LYS A:232 , SER A:429 , ASP A:599 , LYS A:646 , HOH A:1098 , HOH A:1365binding site for residue GOL A 816

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PFO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PFO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PFO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PFO)

(-) Exons   (0, 0)

(no "Exon" information available for 4PFO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:755
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeeeeeeee..eeeeee.......eeehhhhhee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..eeee.....eeee...hhhhhhhhhhhhh.hhhhhhhhhheee...eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhhhhhhh....hhhhhhhhhhhhh.....eehhhhh.hhhhh..hhh.eeeeee..eeeeee..hhhhhh....hhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhh.hhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......eee...eeee...hhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pfo A   5 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFELSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLI 789
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174|      189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389     ||409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619  ||   644       654       664       674       684       694       704       714       724       734       744       754       764       774       784     
                                                                                                                                                                                                   174|                                                                                                                                                                                                                    395|                                                                                                                                                                                                                     622|                                                                                                                                                       
                                                                                                                                                                                                    180                                                                                                                                                                                                                     406                                                                                                                                                                                                                      638
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PFO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PFO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PFO)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F1RQI7_PIG | F1RQI7: 4dbp 4dbq 4dbr
UniProtKB/TrEMBL
        F1RQI7_PIG | F1RQI7: 4e7s 4e7z 4pfp 4pjj 4pjl 4pjm 4pjn 4pk4

(-) Related Entries Specified in the PDB File

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