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(-) Description

Title :  CRYSTAL STRUCTURE OF PREFUSION-STABILIZED RSV F VARIANT DS
 
Authors :  J. S. Mclellan, M. G. Joyce, G. B. E. Stewart-Jones, M. Sastry, Y. Yang, B. S. Graham, P. D. Kwong
Date :  09 Sep 13  (Deposition) - 20 Nov 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Fusion, Membrane, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. S. Mclellan, M. Chen, M. G. Joyce, M. Sastry, G. B. Stewart-Jones, Y. Yang, B. Zhang, L. Chen, S. Srivatsan, A. Zheng, T. Zhou, K. W. Graepel, A. Kumar, S. Moin, J. C. Boyington, G. Y. Chuang, C. Soto, U. Baxa, A. Q. Bakker, H. Spits, T. Beaumont, Z. Zheng, N. Xia, S. Y. Ko, J. P. Todd, S. Rao, B. S. Graham, P. D. Kwong
Structure-Based Design Of A Fusion Glycoprotein Vaccine For Respiratory Syncytial Virus.
Science V. 342 592 2013
PubMed-ID: 24179220  |  Reference-DOI: 10.1126/SCIENCE.1243283

(-) Compounds

Molecule 1 - FUSION GLYCOPROTEIN F2
    ChainsA
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System PlasmidP(ALPHA)H
    Expression System StrainFREESTYLE(TM) 293-F
    Expression System Taxid9606
    GeneF
    MutationYES
    Organism ScientificHUMAN RESPIRATORY SYNCYTIAL VIRUS A2
    Organism Taxid11259
 
Molecule 2 - FUSION GLYCOPROTEIN F1 FUSED WITH FIBRITIN TRIMERIZATION DOMAIN
    ChainsB
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System PlasmidP(ALPHA)H
    Expression System StrainFREESTYLE(TM) 293-F
    Expression System Taxid9606
    GeneF
    MutationYES
    Organism ScientificHUMAN RESPIRATORY SYNCYTIAL VIRUS A2, ENTEROBACTERIA PHAGE T4
    Organism Taxid11259, 10665

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (3x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1SO418Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:91 , SO4 B:603BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWARELYS B:156 , SER B:362BINDING SITE FOR RESIDUE SO4 B 601
3AC3SOFTWAREILE B:266 , THR B:267 , VAL B:442 , LYS B:445 , VAL B:447BINDING SITE FOR RESIDUE SO4 B 602
4AC4SOFTWAREASN A:88 , SO4 A:201 , THR B:253 , SER B:255BINDING SITE FOR RESIDUE SO4 B 603
5AC5SOFTWAREPRO B:265 , ASN B:426 , ASN B:428BINDING SITE FOR RESIDUE SO4 B 604
6AC6SOFTWARELYS B:445 , GLY B:446 , LYS B:461BINDING SITE FOR RESIDUE SO4 B 605

(-) SS Bonds  (7, 7)

Asymmetric Unit
No.Residues
1A:37 -B:439
2B:155 -B:290
3B:313 -B:343
4B:322 -B:333
5B:358 -B:367
6B:382 -B:393
7B:416 -B:422

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr B:245 -Pro B:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MMQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MMQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4MMQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeeeeeeeee.eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4mmq A  27 NITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSKVKLIKQELDKYKNAVTELQLLMQS  99
                                    36        46        56     || 78        88        98 
                                                              62|                        
                                                               75                        

Chain B from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeee..eeeeeeeeeee..ee..........eeee...eeeeee..eeeee.hhhhheee..eeeee.hhheeehhhhhhhhhh........eeeee.....eeee...eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee......eeeee...hhhhhh...........eehhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mmq B 137 FLGFLLGVGSAIASGVAVCKVLHLEGEVNKIKSNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDE 511
                                   146       156       166 ||    222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502         
                                                         168|                                                                                                                                                                                                                                                                                                        
                                                          215                                                                                                                                                                                                                                                                                                        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MMQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MMQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MMQ)

(-) Gene Ontology  (12, 13)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FUS_HRSVA | P034202mdp 3ixt 3kpe 3o41 3o45 3rki 3rrr 3rrt 4ccf 4jhw 4mmr 4mms 4mmt 4mmu 4mmv 4zyp 5c69 5c6b 5ea3 5ea4 5ea5 5ea6 5ea7 5ea8 5j3d 5k6b 5k6c 5k6f 5k6g 5k6h 5k6i 5toj 5tok 5tpn 5u68 5udc
        WAC_BPT4 | P101041aa0 1avy 1ox3 1rfo 1v1h 1v1i 2bsg 2ibl 2kbl 3a1m 3j2o 4mmr 4mms 4mmt 4mmu 4mmv 4ncu 4ncv 4ncw

(-) Related Entries Specified in the PDB File

4jhw 4mmr 4mms 4mmt 4mmu 4mmv