Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  A FUSION PROTEIN OF A BETA HELIX REGION OF GENE PRODUCT 5 AND THE FOLDON REGION OF BACTERIOPHAGE T4
 
Authors :  N. Yokoi, A. Suzuki, T. Hikage, T. Koshiyama, M. Terauchi, K. Yutani, S. F. Arisaka, T. Yamane, Y. Watanabe, T. Ueno
Date :  11 Apr 09  (Deposition) - 21 Apr 10  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Bacteriophage T4, Antimicrobial, Bacteriolytic Enzyme, Glycosidase, Hydrolase, Late Protein, Chaperone, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Yokoi, H. Inaba, M. Terauchi, A. Z. Stieg, N. J. Sanghamitra, T. Koshiyama, K. Yutani, S. Kanamaru, F. Arisaka, T. Hikage, A. Suzuki T. Yamane, J. K. Gimzewski, Y. Watanabe, S. Kitagawa, T. Ueno
Construction Of Robust Bio-Nanotubes Using The Controlled Self-Assembly Of Component Proteins Of Bacteriophage T4
Small V. 6 1873 2010
PubMed-ID: 20661999  |  Reference-DOI: 10.1002/SMLL.201000772

(-) Compounds

Molecule 1 - CHIMERA OF THROMBIN CLEAVAGE SITE, TAIL-ASSOCIATED LYSOZYME, FIBRITIN
    Chains: A, B, C, D, E, F
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Common: BACTERIOPHAGE T4
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Other Details: THE ARTIFICIAL FUSION PROTEIN, GP5 F MONOMER CONSISTS OF A THROMBIN CLEAVAGE SITE (RESIDUE 1-15), RESIDUES 490-575 OF GP5C (16-101), SER-VAL-GLU (102-104), THE FOLDON DOMAIN (105-131), VAL-GLU (132-133), AND A 6XHIS-TAG FRAGMENT (134-139).
    Synonym: PROTEIN GP5, WHISKER ANTIGEN CONTROL PROTEIN, COLLAR PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1K2Ligand/IonPOTASSIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:146 , HOH A:154 , HOH B:143 , HOH B:161 , HOH C:148 , HOH C:158BINDING SITE FOR RESIDUE K A 140
2AC2SOFTWAREHOH D:141 , HOH D:142 , HOH E:147 , HOH E:322 , HOH F:143 , HOH F:307BINDING SITE FOR RESIDUE K D 140

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3A1M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3A1M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A1M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A1M)

(-) Exons   (0, 0)

(no "Exon" information available for 3A1M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
 aligned with BP5_BPT4 | P16009 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:112
                                                                                                              575                           
                                   500       510       520       530       540       550       560       570    |    -         -         -  
             BP5_BPT4   491 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG---------------------------   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee.eeeeee..eeeee..eeee...............eeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3a1m A  17 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIGSVEGYIPEAPRDGQAYVRKDGEWVFLS 128
                                    26        36        46        56        66        76        86        96       106       116       126  


Chain A from PDB  Type:PROTEIN  Length:112
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:222
                                   269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479  
             WAC_BPT4   260 PGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVGTDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLS 481
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee----------------------ee..eeeee.--..eeee--e..---.eeeee.------..eeee-e...eeee--e...---------------------------------eeeee.-----------------------.eeeee-------e.eeeeee..eeeee..eeee.....---------..........eeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a1m A  17 EGNGTIL----------------------VKGNVTIIVE--GNADIT--VKG---DATTLVE------GNQTNT-VNGNLSWK--VAGT---------------------------------VDWDVG-----------------------GDWTEK-------MASMSSISSGQYTIDGSRIDIGSVEG---------YIPEAPRDGQAYVRKDGEWVFLS 128
                                  |  -         -        24        |- |    | 40 |   |  47 |      51   | |  60  |  |  |-         -         -         -  |    | -         -         - |    |  -    |   85        95       105       106       116       126  
                                 23                     24       33 34   39 40 |  43    49     50   55 |     63 64 67                                68   73                      74   79      80                      105       106                      
                                                                              42                      56                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:112
 aligned with BP5_BPT4 | P16009 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:112
                                                                                                              575                           
                                   500       510       520       530       540       550       560       570    |    -         -         -  
             BP5_BPT4   491 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG---------------------------   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee.eeeeee..eeeee..eeee...............eeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3a1m B  17 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIGSVEGYIPEAPRDGQAYVRKDGEWVFLS 128
                                    26        36        46        56        66        76        86        96       106       116       126  


Chain B from PDB  Type:PROTEIN  Length:112
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:222
                                   269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479  
             WAC_BPT4   260 PGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVGTDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLS 481
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee----------------------ee..eeeee.--..eeee--e..---.eeeee.------..eeee-e...eeee--e...---------------------------------eeeee.-----------------------.eeeee-------e.eeeeee..eeeee..eeee.....---------..........eeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a1m B  17 EGNGTIL----------------------VKGNVTIIVE--GNADIT--VKG---DATTLVE------GNQTNT-VNGNLSWK--VAGT---------------------------------VDWDVG-----------------------GDWTEK-------MASMSSISSGQYTIDGSRIDIGSVEG---------YIPEAPRDGQAYVRKDGEWVFLS 128
                                  |  -         -        24        |- |    | 40 |   |  47 |      51   | |  60  |  |  |-         -         -         -  |    | -         -         - |    |  -    |   85        95       105       106       116       126  
                                 23                     24       33 34   39 40 |  43    49     50   55 |     63 64 67                                68   73                      74   79      80                      105       106                      
                                                                              42                      56                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:111
 aligned with BP5_BPT4 | P16009 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:111
                                                                                                             575                           
                                   501       511       521       531       541       551       561       571   |     -         -         - 
             BP5_BPT4   492 GNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG---------------------------   -
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee.eeeeee..eeeee..eeee................eeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3a1m C  18 GNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIGSVEGYIPEAPRDGQAYVRKDGEWVFLS 128
                                    27        37        47        57        67        77        87        97       107       117       127 


Chain C from PDB  Type:PROTEIN  Length:111
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:221
                                   270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480 
             WAC_BPT4   261 GNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVGTDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLS 481
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee----------------------e...eeeee.--..eeee--e..---.eeeee.------..eeee-e...eeee--e...---------------------------------eeeee.-----------------------.eeeee-------e.eeeeee..eeeee..eeee.....---------...........eeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a1m C  18 GNGTIL----------------------VKGNVTIIVE--GNADIT--VKG---DATTLVE------GNQTNT-VNGNLSWK--VAGT---------------------------------VDWDVG-----------------------GDWTEK-------MASMSSISSGQYTIDGSRIDIGSVEG---------YIPEAPRDGQAYVRKDGEWVFLS 128
                                 |   -         -        25       | -|    |  41|   |   48|      |52  | |   61 |  |  | -         -         -         - |    |  -         -         -|    |   -   |    86        96        |-       107       117       127 
                                23                     24       33 34   39 40 |  43    49     50   55 |     63 64 67                                68   73                      74   79      80                      105       106                      
                                                                             42                      56                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:85
 aligned with BP5_BPT4 | P16009 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:85
                                   500       510       520       530       540       550       560       570     
             BP5_BPT4   491 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 575
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee..eeeee...eeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 3a1m D  17 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 101
                                    26        36        46        56        66        76        86        96     


Chain D from PDB  Type:PROTEIN  Length:85
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:129
                                                                                                                   348                                       
                                                                                                                 347 |                                       
                                   269       279       289       299       309       319       329       339       348       358       368       378         
             WAC_BPT4   260 PGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVG-TDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIG 387
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee----------------------ee..eeeee.--..eeee--e..---.eeeee.------..eeee-e...eee--ee...eeeee.-----.eeeeee..eeeee..-.eeee...eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a1m D  17 EGNGTIL----------------------VKGNVTIIVE--GNADIT--VKG---DATTLVE------GNQTNT-VNGNLSW--KVAGTVDWDVG-----GDWTEKMASMSSISSG-QYTIDGSRIDIG 101
                                  |  -         -        24        |- |    | 40 |   |  47 |      51   | |  60 |  |   68    |    -|       83     | |92         
                                 23                     24       33 34   39 40 |  43    49     50   55 |    62 63        73    74             89 |           
                                                                              42                      56                                        90           


Chain E from PDB  Type:PROTEIN  Length:85
 aligned with BP5_BPT4 | P16009 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:85
                                   500       510       520       530       540       550       560       570     
             BP5_BPT4   491 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 575
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee.eeeeee..eeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 3a1m E  17 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 101
                                    26        36        46        56        66        76        86        96     


Chain E from PDB  Type:PROTEIN  Length:85
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:129
                                                                                                                   348                                       
                                                                                                                 347 |                                       
                                   269       279       289       299       309       319       329       339       348       358       368       378         
             WAC_BPT4   260 PGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVG-TDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIG 387
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee----------------------ee..eeeee.--..eeee--e..---.eeeee.------..eeee-e...eee--ee...eeeee.-----.eeeeee.eeeeee..-eeeee...eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a1m E  17 EGNGTIL----------------------VKGNVTIIVE--GNADIT--VKG---DATTLVE------GNQTNT-VNGNLSW--KVAGTVDWDVG-----GDWTEKMASMSSISSG-QYTIDGSRIDIG 101
                                  |  -         -        24        |- |    | 40 |   |  47 |      51   | |  60 |  |   68    |    -|       83     | |92         
                                 23                     24       33 34   39 40 |  43    49     50   55 |    62 63        73    74             89 |           
                                                                              42                      56                                        90           


Chain F from PDB  Type:PROTEIN  Length:85
 aligned with BP5_BPT4 | P16009 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:85
                                   500       510       520       530       540       550       560       570     
             BP5_BPT4   491 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 575
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee.eeeeee...eeee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 3a1m F  17 EGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 101
                                    26        36        46        56        66        76        86        96     


Chain F from PDB  Type:PROTEIN  Length:85
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:129
                                                                                                                   348                                       
                                                                                                                 347 |                                       
                                   269       279       289       299       309       319       329       339       348       358       368       378         
             WAC_BPT4   260 PGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVG-TDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIG 387
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee----------------------ee..eeeee.--..eeee--e..---.eeeee.------..eeee-e...eee--ee...eeeee.-----..eeeee.eeeeee..-.eeee..eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a1m F  17 EGNGTIL----------------------VKGNVTIIVE--GNADIT--VKG---DATTLVE------GNQTNT-VNGNLSW--KVAGTVDWDVG-----GDWTEKMASMSSISSG-QYTIDGSRIDIG 101
                                  |  -         -        24        |- |    | 40 |   |  47 |      51   | |  60 |  |   68    |    -|       83     | |92         
                                 23                     24       33 34   39 40 |  43    49     50   55 |    62 63        73    74             89 |           
                                                                              42                      56                                        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3A1M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3A1M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A1M)

(-) Gene Ontology  (16, 17)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (BP5_BPT4 | P16009)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0003796    lysozyme activity    Catalysis of the hydrolysis of the beta-(1->4) linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan.
    GO:0033922    peptidoglycan beta-N-acetylmuramidase activity    Catalysis of the hydrolysis of terminal, non-reducing N-acetylmuramic residues.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0016998    cell wall macromolecule catabolic process    The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0085027    entry into host via enzymatic degradation of host anatomical structure    Penetration by symbiont of a host anatomical structure which provides a barrier to symbiont entry, mediated by symbiont degradative enzymes.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0009253    peptidoglycan catabolic process    The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0098025    virus tail, baseplate    Multiprotein component at the distal (head) end of the virus tail to which fibers of tailed viruses may be attached.

Chain A,B,C,D,E,F   (WAC_BPT4 | P10104)
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    K  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3a1m)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3a1m
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  BP5_BPT4 | P16009
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  WAC_BPT4 | P10104
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.2.1.17
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  BP5_BPT4 | P16009
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  WAC_BPT4 | P10104
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BP5_BPT4 | P16009: 1k28 1pdl 1wth 2z6b 4jiv 4jiw 4jj2 4ku0 4osd 5iv5
        WAC_BPT4 | P10104: 1aa0 1avy 1ox3 1rfo 1v1h 1v1i 2bsg 2ibl 2kbl 3j2o 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4ncu 4ncv 4ncw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3A1M)