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(-) Description

Title :  CRYSTAL STRUCTURE OF PREFUSION-STABILIZED RSV F SINGLE-CHAIN 9-10 DS-CAV1 VARIANT.
 
Authors :  M. G. Joyce, B. Zhang, Y. T. Lai, J. R. Mascola, P. D. Kwong
Date :  24 May 16  (Deposition) - 12 Oct 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.58
Chains :  Asym. Unit :  F
Biol. Unit 1:  F  (3x)
Keywords :  Respiratory Syncytial Virus, Prefusion, Vaccine, Stabilized, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Joyce, B. Zhang, L. Ou, M. Chen, G. Y. Chuang, A. Druz, W. P. Kong, Y. T. Lai, E. J. Rundlet, Y. Tsybovsky, Y. Yang, I. S. Georgiev, M. Guttman, C. R. Lees, M. Pancera, M. Sastry, C. Soto, G. B. Stewart-Jones, P. V. Thomas, J. G. Van Galen, U. Baxa, K. K. Lee, J. R. Mascola, B. S. Graham, P. D. Kwong
Iterative Structure-Based Improvement Of A Fusion-Glycoprotein Vaccine Against Rsv.
Nat. Struct. Mol. Biol. V. 23 811 2016
PubMed-ID: 27478931  |  Reference-DOI: 10.1038/NSMB.3267

(-) Compounds

Molecule 1 - FUSION GLYCOPROTEIN F0,FUSION GLYCOPROTEIN F0
    Chains: F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 26-101 LINKED TO RESIDUES 145-509 VIA LINKER RESIDUES ATGS
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A (STRAIN A2), HUMAN RESPIRATORY SYNCYTIAL VIRUS A
    Organism Taxid: 11259
    Other Details: RSV F SINGLE-CHAIN 9 DS-CAV1VARIANT
    Strain: A2
    Synonym: PROTEIN F,PROTEIN F

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : F
Biological Unit 1 (3x): F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER F:186 , ASN F:426 , ARG F:429binding site for residue SO4 F 601

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1F:37 -F:439
2F:69 -F:212
3F:155 -F:290
4F:313 -F:343
5F:322 -F:333
6F:358 -F:367
7F:382 -F:393
8F:416 -F:422

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly F:143 -Ser F:144
2Thr F:245 -Pro F:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K6C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K6C)

(-) Exons   (0, 0)

(no "Exon" information available for 5K6C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain F from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeeeee..eeeeeeeeeeeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhh....eeeee.....eeeeeeeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeeeeeee...eeeeee..ee..........eeee...eeeeee..eeeee......eee..eeeee.hhheeehhhhhhhhh.........eeeee.....eee....eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee.......eeee...hhhhhh........eeeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k6c F  26 QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSTPATGSGSAIASGVAVCKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSRTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKS 509
                                    35        45        55        65        75        85        95       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504     
                                                                                                       103|                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                        143
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K6C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K6C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K6C)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FUS_HRSVA | P03420: 2mdp 3ixt 3kpe 3o41 3o45 3rki 3rrr 3rrt 4ccf 4jhw 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4zyp 5c69 5c6b 5ea3 5ea4 5ea5 5ea6 5ea7 5ea8 5j3d 5k6b 5k6f 5k6g 5k6h 5k6i 5toj 5tok 5tpn 5u68 5udc

(-) Related Entries Specified in the PDB File

5k6b 5k6f 5k6g 5k6h 5k6i