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(-) Description

Title :  CRYSTAL STRUCTURE OF PREFUSION-STABILIZED RSV F SINGLE-CHAIN 9-19 DS-CAV1 VARIANT.
 
Authors :  M. G. Joyce, B. Zhang, Y. T. Lai, J. R. Mascola, P. D. Kwong
Date :  24 May 16  (Deposition) - 10 Aug 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym. Unit :  F
Biol. Unit 1:  F  (3x)
Keywords :  Respiratory Syncytial Virus, Prefusion, Vaccine, Stabilized, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Joyce, B. Zhang, L. Ou, M. Chen, G. Y. Chuang, A. Druz, W. P. Kong, Y. T. Lai, E. J. Rundlet, Y. Tsybovsky, Y. Yang, I. S. Georgiev, M. Guttman, C. R. Lees, M. Pancera, M. Sastry, C. Soto, G. B. Stewart-Jones, P. V. Thomas, J. G. Van Galen, U. Baxa, K. K. Lee, J. R. Mascola, B. S. Graham, P. D. Kwong
Iterative Structure-Based Improvement Of A Fusion-Glycoprotein Vaccine Against Rsv.
Nat. Struct. Mol. Biol. V. 23 811 2016
PubMed-ID: 27478931  |  Reference-DOI: 10.1038/NSMB.3267

(-) Compounds

Molecule 1 - FUSION GLYCOPROTEIN F0
    Chains: F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 26-103 LINKED TO RESIDUES 145-509 VIA LINKER RESIDUES GGSGGSG
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A (STRAIN A2)
    Organism Taxid: 11259
    Other Details: RSV F SINGLE-CHAIN 9-19 DS-CAV1 VARIANT
    Strain: A2
    Synonym: PROTEIN F,PROTEIN F

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : F
Biological Unit 1 (3x): F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5K6F)

(-) Sites  (0, 0)

(no "Site" information available for 5K6F)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1F:37 -F:439
2F:69 -F:212
3F:155 -F:290
4F:313 -F:343
5F:322 -F:333
6F:358 -F:367
7F:382 -F:393
8F:416 -F:422

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr F:245 -Pro F:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K6F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K6F)

(-) Exons   (0, 0)

(no "Exon" information available for 5K6F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain F from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....eeeeeeeeeeeeeeeeeeeeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee.....eeeeeeeeehhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeeeeeeeeeeeeeeee..ee....hhhhh.eeee...eeeeee..eeeee.hhhhheee..eeeee.hhheeehhhhhhhhhh........eeeee.....eeee...eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee.....eeeeee...hhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k6f F  26 QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSTPATGGSGGSGGSAIASGVAVCKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSRTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKS 509
                                    35        45        55        65        75        85        95       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509
                                                                                                       103|                                                                                                                                                                                                                                                                                                                                                                                   
                                                                                                        138
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K6F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K6F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K6F)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Thr F:245 - Pro F:246   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FUS_HRSVA | P03420: 2mdp 3ixt 3kpe 3o41 3o45 3rki 3rrr 3rrt 4ccf 4jhw 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4zyp 5c69 5c6b 5ea3 5ea4 5ea5 5ea6 5ea7 5ea8 5j3d 5k6b 5k6c 5k6g 5k6h 5k6i 5toj 5tok 5tpn 5u68 5udc

(-) Related Entries Specified in the PDB File

5k6b 5k6c 5k6g 5k6h 5k6i