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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN FAB 14N4 IN COMPLEX WITH POST-FUSION RSV F
 
Authors :  J. J. Mousa, J. E. Crowe
Date :  30 Mar 16  (Deposition) - 26 Oct 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.08
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Antibody, Virus, Complex, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Mousa, M. F. Sauer, A. M. Sevy, J. A. Finn, J. T. Bates, G. Alvarado, H. G. King, L. B. Loerinc, R. H. Fong, B. J. Doranz, B. E. Correia, O. Kalyuzhniy, X. Wen, T. S. Jardetzky, W. R. Schief, M. D. Ohi, J. Meiler, J. E. Crowe
Structural Basis For Nonneutralizing Antibody Competition A Antigenic Site Ii Of The Respiratory Syncytial Virus Fusion Protein.
Proc. Natl. Acad. Sci. Usa V. 113 E6849 2016
PubMed-ID: 27791117  |  Reference-DOI: 10.1073/PNAS.1609449113

(-) Compounds

Molecule 1 - 14N4 HEAVY CHAIN
    Chains: A, C, H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - 14N4 LIGHT CHAIN
    Chains: B, D, L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - FUSION GLYCOPROTEIN F0
    Chains: E, G, J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 26-98
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A
    Organism Taxid: 12814
    Synonym: PROTEIN F
 
Molecule 4 - FUSION GLYCOPROTEIN F0
    Chains: F, I, K
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 147-513
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A
    Organism Taxid: 12814
    Synonym: PROTEIN F

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5J3D)

(-) Sites  (0, 0)

(no "Site" information available for 5J3D)

(-) SS Bonds  (36, 36)

Asymmetric/Biological Unit
No.Residues
1A:23 -A:104
2A:155 -A:211
3A:231 -B:234
4B:23 -B:104
5B:154 -B:214
6C:23 -C:104
7C:155 -C:211
8C:231 -D:234
9D:23 -D:104
10D:154 -D:214
11E:37 -F:439
12E:69 -F:212
13F:313 -F:343
14F:322 -F:333
15F:358 -F:367
16F:382 -F:393
17F:416 -F:422
18G:37 -I:439
19G:69 -I:212
20H:23 -H:104
21H:155 -H:211
22H:231 -L:234
23I:313 -I:343
24I:322 -I:333
25I:358 -I:367
26I:382 -I:393
27I:416 -I:422
28J:37 -K:439
29J:69 -K:212
30K:313 -K:343
31K:322 -K:333
32K:358 -K:367
33K:382 -K:393
34K:416 -K:422
35L:23 -L:104
36L:154 -L:214

(-) Cis Peptide Bonds  (21, 21)

Asymmetric/Biological Unit
No.Residues
1Phe A:161 -Pro A:162
2Glu A:163 -Pro A:164
3Ser B:7 -Pro B:8
4Tyr B:160 -Pro B:161
5Phe C:161 -Pro C:162
6Glu C:163 -Pro C:164
7Ser D:7 -Pro D:8
8Tyr D:160 -Pro D:161
9Ser F:150 -Gly F:151
10Thr F:245 -Pro F:246
11Leu F:513 -Gly F:514
12Phe H:161 -Pro H:162
13Glu H:163 -Pro H:164
14Ser I:150 -Gly I:151
15Thr I:245 -Pro I:246
16Leu I:513 -Gly I:514
17Ser K:150 -Gly K:151
18Thr K:245 -Pro K:246
19Leu K:513 -Gly K:514
20Ser L:7 -Pro L:8
21Tyr L:160 -Pro L:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J3D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J3D)

(-) Exons   (0, 0)

(no "Exon" information available for 5J3D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eee....eeeeeee....hhhhh.eeeeee......eeeeee.....eee.......ee..ee....eeeeeee..hhhhheeeeeee............ee...eeeee........eeeee...........eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d A    5 VESGGGLIQPGGSLRLSCAVSGFTVSSKYMTWVRQAPGKGLEWVSVIYGGGSTYYADSVVGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASRLGVRATTGDLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC  231
                                ||  15        25    ||  39        49        59|       72|       83        93       103      112A       121       131       141       151       161       171       181       191       201       211       221       231
                                9|                 30|                      59|       72|                                  111A|                                                                                                                        
                                11                  35                       63        74                                   112A                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee.....eeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee.......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee....eeeeeee........ee............eeeeeeeeeehhhhh...eeeeeeee......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d B    1 DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYDASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNTYSWWTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  234
                                    10        20        36        46        56||      74     || 86        96       106  ||   119       129       139       149       159       169       179       189       199       209       219       229     
                                                       29|                   57|     72|    80|                       109|                                                                                                                         
                                                        36                    65      74     83                        113                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.....eeeeee....hhhhh.eeeeee......eeeeee.....eee.......eeeeee....eeeeee...hhhhheeeeeee............ee...eeeee........eeeee...........eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d C    5 VESGGGLIQPGGSLRLSCAVSGFTVSSKYMTWVRQAPGKGLEWVSVIYGGGSTYYADSVVGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASRLGVRATTGDLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC  231
                                ||  15        25    ||  39        49        59|       72|       83        93       103      112A       121       131       141       151       161       171       181       191       201       211       221       231
                                9|                 30|                      59|       72|                                  111A|                                                                                                                        
                                11                  35                       63        74                                   112A                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee.......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee....eeeeeee........ee............eeeeeeeeeehhhhh...eeeeeeee......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d D    1 DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYDASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNTYSWWTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  234
                                    10        20        36        46        56||      74     || 86        96       106  ||   119       129       139       149       159       169       179       189       199       209       219       229     
                                                       29|                   57|     72|    80|                       109|                                                                                                                         
                                                        36                    65      74     83                        113                                                                                                                         


Chain E from PDB  Type:PROTEIN  Length:73
                                                                                                          
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeeeeeeeeeeeeeeeeeeeee................hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                5j3d E   26 QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ   98
                                    35        45        55        65        75        85        95   


Chain F from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhh....hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeeeeeeeeeeeeeeee.....eee...eeeee....eeee.....eeee..eeeee.hhheeehhhhhhh............eee......eeeee..eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee.......eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d F  147 AIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCCLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLG  514
                                   156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316     ||336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506        
                                                                                                                                                                                                         322|                                                                                                                                                                                     
                                                                                                                                                                                                          333                                                                                                                                                                                     


Chain G from PDB  Type:PROTEIN  Length:73
                                                                                                          
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeeeeeeeeeeeeeeeeeeeee................hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                5j3d G   26 QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ   98
                                    35        45        55        65        75        85        95   


Chain H from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee....eeeeeee..........eeeeee......eeeeee.....eee.......eeeeee....eeeeeee..hhhhheeeeeee............ee...eeeee........eeeee...........eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d H    5 VESGGGLIQPGGSLRLSCAVSGFTVSSKYMTWVRQAPGKGLEWVSVIYGGGSTYYADSVVGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASRLGVRATTGDLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC  231
                                ||  15        25    ||  39        49        59|       72|       83        93       103      112A       121       131       141       151       161       171       181       191       201       211       221       231
                                9|                 30|                      59|       72|                                  111A|                                                                                                                        
                                11                  35                       63        74                                   112A                                                                                                                        


Chain I from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhh....hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeeeeeeeeeeeeeeee.....eee...eeeee....eeee.....eeee..eeeee.hhheeehhhhhhhh...........eee......eeeee..eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee........eee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d I  147 AIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCCLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLG  514
                                   156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316     ||336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506        
                                                                                                                                                                                                         322|                                                                                                                                                                                     
                                                                                                                                                                                                          333                                                                                                                                                                                     


Chain J from PDB  Type:PROTEIN  Length:73
                                                                                                          
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeeeeeeeeeeeeeeeeeeeee................hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                5j3d J   26 QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ   98
                                    35        45        55        65        75        85        95   


Chain K from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhh....hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeeeeeeeeeeeeeeee......ee...eeee.....eeee.....eeee..eeeee....eeehhhhhhhh...........ee.......eeeee..eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee...ee...eee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d K  147 AIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCCLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLG  514
                                   156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316     ||336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506        
                                                                                                                                                                                                         322|                                                                                                                                                                                     
                                                                                                                                                                                                          333                                                                                                                                                                                     


Chain L from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee.......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee........ee............eeeeeeeeeehhhhh...eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j3d L    1 DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYDASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNTYSWWTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  234
                                    10        20        36        46        56||      74     || 86        96       106  ||   119       129       139       149       159       169       179       189       199       209       219       229     
                                                       29|                   57|     72|    80|                       109|                                                                                                                         
                                                        36                    65      74     83                        113
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J3D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J3D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J3D)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5j3d)
 
  Cis Peptide Bonds
    Glu A:163 - Pro A:164   [ RasMol ]  
    Glu C:163 - Pro C:164   [ RasMol ]  
    Glu H:163 - Pro H:164   [ RasMol ]  
    Leu F:513 - Gly F:514   [ RasMol ]  
    Leu I:513 - Gly I:514   [ RasMol ]  
    Leu K:513 - Gly K:514   [ RasMol ]  
    Phe A:161 - Pro A:162   [ RasMol ]  
    Phe C:161 - Pro C:162   [ RasMol ]  
    Phe H:161 - Pro H:162   [ RasMol ]  
    Ser B:7 - Pro B:8   [ RasMol ]  
    Ser D:7 - Pro D:8   [ RasMol ]  
    Ser F:150 - Gly F:151   [ RasMol ]  
    Ser I:150 - Gly I:151   [ RasMol ]  
    Ser K:150 - Gly K:151   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
    Thr F:245 - Pro F:246   [ RasMol ]  
    Thr I:245 - Pro I:246   [ RasMol ]  
    Thr K:245 - Pro K:246   [ RasMol ]  
    Tyr B:160 - Pro B:161   [ RasMol ]  
    Tyr D:160 - Pro D:161   [ RasMol ]  
    Tyr L:160 - Pro L:161   [ RasMol ]  
 

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  5j3d
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  FUS_HRSVA | P03420
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FUS_HRSVA | P03420: 2mdp 3ixt 3kpe 3o41 3o45 3rki 3rrr 3rrt 4ccf 4jhw 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4zyp 5c69 5c6b 5ea3 5ea4 5ea5 5ea6 5ea7 5ea8 5k6b 5k6c 5k6f 5k6g 5k6h 5k6i 5toj 5tok 5tpn 5u68 5udc

(-) Related Entries Specified in the PDB File

5itb CRYSTAL STRUCTURE OF 14N4 FAB ALONE AT HIGHER RESOLUTION