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(-) Description

Title :  THE MODELED STRUCTURE OF FIBRITIN (GPWAC) OF BACTERIOPHAGE T4 BASED ON CRYO-EM RECONSTRUCTION OF THE EXTENDED TAIL OF BACTERIOPHAGE T4
 
Authors :  V. A. Kostyuchenko, P. R. Chipman, P. G. Leiman, F. Arisaka, V. V. Mesyanzhinov, M. G. Rossmann
Date :  20 May 05  (Deposition) - 21 Sep 05  (Release) - 15 Jan 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  15.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Viral Protein, Attachment Protein, Bacteriophage Assembly, Bacteriophage T4, Chaperone, Coiled Coil, Fibritin, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. A. Kostyuchenko, P. R. Chipman, P. G. Leiman, F. Arisaka, V. V. Mesyanzhinov, M. G. Rossmann
The Tail Structure Of Bacteriophage T4 And Its Mechanism Of Contraction.
Nat. Struct. Mol. Biol. V. 12 810 2005
PubMed-ID: 16116440  |  Reference-DOI: 10.1038/NSMB975

(-) Compounds

Molecule 1 - FIBRITIN
    Chains: A, B, C
    Organism Scientific: BACTERIOPHAGE T4
    Organism Taxid: 10665
    Other Details: THE PROTEIN WAS MODELED WITH SEGMENTS OF TRIPLE HELICAL COILED COIL ARRANGED ALONG CRYO-EM DENSITY ASSIGNED TO FIBRITIN
    Synonym: WHISKER ANTIGEN CONTROL PROTEIN, COLLAR PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BSG)

(-) Sites  (0, 0)

(no "Site" information available for 2BSG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BSG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BSG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BSG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BSG)

(-) Exons   (0, 0)

(no "Exon" information available for 2BSG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:482
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
             WAC_BPT4     3 DIVLNDLPFVDGPPAEGQSRISWIKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSSGMKHRIINNTDVITSQGIRLSELETKFIESDVGSLTIEVGNLREELGPKPPSFSQNVYSRLNEIDTKQTTVESDISAIKTSIGYPGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVGTDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFL 484
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............................................................................----------------..................................-------------............--------------------...................-------------.............----------..........................------...................------............--------............--------------............-------------............................................................................................................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bsg A   2 DIVLNDLPFVDGPPAEGQSRISWIKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQ----------------INKKDISDLKTLTSEHTEILNGTNNTVDSILADI-------------IRNDLLWIKREL--------------------MKHRIINNTDVITSQGIRL-------------SLTIEVGNLREEL----------VYSRLNEIDTKQTTVESDISAIKTSI------SIITSVNTNTDNIASINLE------IKQRLTVIETSI--------IKGQIKDNTTSI--------------LRANVSWLNQIV-------------SLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFL 483
                                    11        21        31        41        51        61        71        |-         -     | 101       111       121        |-         -  |    151   |     -         -    |  181       191  |      -      |211        |-       231       241       251    |    - |     271       281      |291       | -      |311       | -         -  |    341   |     -       361       371       381       391       401       411       421       431       441       451       461       471       481  
                                                                                                         80               97                              130           144        155                  176               194           208         220        231                      256    263               281    288        299      308        319            334        345           359                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:363
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:482
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
             WAC_BPT4     3 DIVLNDLPFVDGPPAEGQSRISWIKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSSGMKHRIINNTDVITSQGIRLSELETKFIESDVGSLTIEVGNLREELGPKPPSFSQNVYSRLNEIDTKQTTVESDISAIKTSIGYPGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVGTDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFL 484
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............................................................................----------------..................................-------------............--------------------...................-------------.............----------..........................------...................------............--------............--------------............-------------............................................................................................................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bsg B   2 DIVLNDLPFVDGPPAEGQSRISWIKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQ----------------INKKDISDLKTLTSEHTEILNGTNNTVDSILADI-------------IRNDLLWIKREL--------------------MKHRIINNTDVITSQGIRL-------------SLTIEVGNLREEL----------VYSRLNEIDTKQTTVESDISAIKTSI------SIITSVNTNTDNIASINLE------IKQRLTVIETSI--------IKGQIKDNTTSI--------------LRANVSWLNQIV-------------SLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFL 483
                                    11        21        31        41        51        61        71        |-         -     | 101       111       121        |-         -  |    151   |     -         -    |  181       191  |      -      |211        |-       231       241       251    |    - |     271       281      |291       | -      |311       | -         -  |    341   |     -       361       371       381       391       401       411       421       431       441       451       461       471       481  
                                                                                                         80               97                              130           144        155                  176               194           208         220        231                      256    263               281    288        299      308        319            334        345           359                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:363
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:482
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
             WAC_BPT4     3 DIVLNDLPFVDGPPAEGQSRISWIKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSSGMKHRIINNTDVITSQGIRLSELETKFIESDVGSLTIEVGNLREELGPKPPSFSQNVYSRLNEIDTKQTTVESDISAIKTSIGYPGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSSGLRANVSWLNQIVGTDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFL 484
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............................................................................----------------..................................-------------............--------------------...................-------------.............----------..........................------...................------............--------............--------------............-------------............................................................................................................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bsg C   2 DIVLNDLPFVDGPPAEGQSRISWIKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQ----------------INKKDISDLKTLTSEHTEILNGTNNTVDSILADI-------------IRNDLLWIKREL--------------------MKHRIINNTDVITSQGIRL-------------SLTIEVGNLREEL----------VYSRLNEIDTKQTTVESDISAIKTSI------SIITSVNTNTDNIASINLE------IKQRLTVIETSI--------IKGQIKDNTTSI--------------LRANVSWLNQIV-------------SLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFL 483
                                    11        21        31        41        51        61        71        |-         -     | 101       111       121        |-         -  |    151   |     -         -    |  181       191  |      -      |211        |-       231       241       251    |    - |     271       281      |291       | -      |311       | -         -  |    341   |     -       361       371       381       391       401       411       421       431       441       451       461       471       481  
                                                                                                         80               97                              130           144        155                  176               194           208         220        231                      256    263               281    288        299      308        319            334        345           359
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2BSG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2BSG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BSG)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (WAC_BPT4 | P10104)
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        WAC_BPT4 | P10104: 1aa0 1avy 1ox3 1rfo 1v1h 1v1i 2ibl 2kbl 3a1m 3j2o 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4ncu 4ncv 4ncw

(-) Related Entries Specified in the PDB File

1aa0 FIBRITIN DELETION MUTANT E (BACTERIOPHAGE T4)
1avy FIBRITIN DELETION MUTANT M (BACTERIOPHAGE T4)
1ox3 CRYSTAL STRUCTURE OF MINI-FIBRITIN
1rfo TRIMERIC FOLDON OF THE T4 PHAGEHEAD FIBRITIN
1v1h ADENOVIRUS FIBRE SHAFT SEQUENCE N-TERMINALLY FUSED TO THE BACTERIOPHAGE T4 FIBRITIN FOLDON TRIMERISATION MOTIF WITH A SHORT LINKER
1v1i ADENOVIRUS FIBRE SHAFT SEQUENCE N-TERMINALLY FUSED TO THE BACTERIOPHAGE T4 FIBRITIN FOLDON TRIMERISATION MOTIF WITH A LONG LINKER RELATED ID: EMD-1126 RELATED DB: EMDB THE TAIL STRUCTURE OF BACTERIOPHAGE T4 AND ITS MECHANISM OF CONTRACTION.