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(-) Description

Title :  FIBRITIN DELETION MUTANT M (BACTERIOPHAGE T4)
 
Authors :  S. V. Strelkov, Y. Tao, V. V. Mesyanzhinov, M. G. Rossmann
Date :  22 Sep 97  (Deposition) - 03 Dec 97  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Biol. Unit 3:  C  (3x)
Keywords :  Bacteriophage T4, Structural Protein, Chaperone, Bacteriophage Assembly, Protein Folding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. V. Strelkov, Y. Tao, M. M. Shneider, V. V. Mesyanzhinov, M. G. Rossmann
Structure Of Bacteriophage T4 Fibritin M: A Troublesome Packing Arrangement.
Acta Crystallogr. , Sect. D V. 54 805 1998
PubMed-ID: 9757094  |  Reference-DOI: 10.1107/S0907444997018878
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FIBRITIN
    Cell Line: BL21
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BL21
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET19B
    Expression System Vector Type: PLASMID
    Fragment: DELETION MUTANT M, RESIDUES 413 - 486 OF THE WILD TYPE
    Gene: WAC
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: GPWAC M

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (3x): A  
Biological Unit 2 (3x):  B 
Biological Unit 3 (3x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1AVY)

(-) Sites  (0, 0)

(no "Site" information available for 1AVY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AVY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1AVY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AVY)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1AVY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:68
                                   429       439       449       459       469       479        
             WAC_BPT4   420 TNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFLSPA 487
               SCOP domains d1avya_ A: Fibritin                                                  SCOP domains
               CATH domains 1avyA00 A:419-486 6-Phosphogluconate Dehydrogenase, domain 3         CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeee..eeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1avy A 419 TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSPA 486
                                   428       438       448       458       468       478        


Chain B from PDB  Type:PROTEIN  Length:54
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:54
                                   442       452       462       472       482    
             WAC_BPT4   433 VTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFLSP 486
               SCOP domains d1avyb_ B: Fibritin                                    SCOP domains
               CATH domains 1avyB00 B:432-485                                      CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh...........eeeee..eeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 1avy B 432 VRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSP 485
                                   441       451       461       471       481    


Chain C from PDB  Type:PROTEIN  Length:68
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:68
                                   428       438       448       458       468       478        
             WAC_BPT4   419 LTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVFLSTFLSP 486
               SCOP domains d1avyc_ C: Fibritin                                                  SCOP domains
               CATH domains 1avyC00 C:418-485 6-Phosphogluconate Dehydrogenase, domain 3         CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeee..eeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1avy C 418 LTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSP 485
                                   427       437       447       457       467       477
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AVY)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (WAC_BPT4 | P10104)
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        WAC_BPT4 | P10104: 1aa0 1ox3 1rfo 1v1h 1v1i 2bsg 2ibl 2kbl 3a1m 3j2o 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4ncu 4ncv 4ncw

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