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(-) Description

Title :  CRYSTAL STRUCTURE OF HSTING(H232) IN COMPLEX WITH C[G(2',5')PA(2',5') P]
 
Authors :  P. Gao, D. J. Patel
Date :  12 Jul 13  (Deposition) - 14 Aug 13  (Release) - 02 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Innate Immunity, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Gao, M. Ascano, T. Zillinger, W. Wang, P. Dai, A. A. Serganov, B. L. Gaffney, S. Shuman, R. A. Jones, L. Deng, G. Hartmann, W. Barchet, T. Tuschl, D. J. Patel
Structure-Function Analysis Of Sting Activation By C[G(2', 5')Pa(3', 5')P] And Targeting By Antiviral Dmxaa.
Cell(Cambridge, Mass. ) V. 154 748 2013
PubMed-ID: 23910378  |  Reference-DOI: 10.1016/J.CELL.2013.07.023

(-) Compounds

Molecule 1 - STIMULATOR OF INTERFERON GENES PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-DI-GMP-BINDING DOMAIN
    Gene: TMEM173, ERIS, MITA, STING
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HSTING, ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR OF IRF3 ACTIVATION, HMITA, TRANSMEMBRANE PROTEIN 173

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
11YC1Ligand/Ion2-AMINO-9-[(1R,3R,6R,8R,9R,11S,14R,16R,17R,18R)-16-(6-AMINO-9H-PURIN-9-YL)-3,11,17,18-TETRAHYDROXY-3,11-DIOXIDO-2,4,7,10,12,15-HEXAOXA-3,11-DIPHOSPHATRICYCLO[12.2.1.1~6,9~]OCTADEC-8-YL]-1,9-DIHYDRO-6H-PURIN-6-ONE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:293 , ASP A:297 , HIS B:185BINDING SITE FOR RESIDUE PO4 A 401
2AC2SOFTWARESER A:162 , TYR A:167 , ARG A:238 , TYR A:240 , GLU A:260 , THR A:263 , PRO A:264 , HOH A:502 , HOH A:503 , HOH A:508 , HOH A:512 , HOH A:513 , HOH A:593 , SER B:162 , TYR B:167 , ILE B:235 , ARG B:238 , TYR B:240 , GLU B:260 , THR B:263 , PRO B:264 , HOH B:502 , HOH B:507 , HOH B:511 , HOH B:514 , HOH B:619BINDING SITE FOR RESIDUE 1YC B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LOI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:191 -Gly A:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LOI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LOI)

(-) Exons   (0, 0)

(no "Exon" information available for 4LOI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains d4loia_ A: Tyrosinase cofactor MelC1                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee.......hhhhhh..eeeeee...eeeee..eeeeee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4loi A 154 SVAHGLAWSYYIGYLRLILPELQARIRTYNQHRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEK 338
                                   163       173       183 ||    198       208       218       228       238       248       258       268       278       288       298    || 310       320       330        
                                                         185|                                                                                                             303|                                
                                                          191                                                                                                              306                                


Chain B from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                       
               SCOP domains d4loib_ B: Tyrosinase cofactor MelC1                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeee.......hhhhhh..eeeeee...eeeee..eeeeee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......eeeeee.........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4loi B 154 SVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQE 336
                                   163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LOI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LOI)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_HUMAN | Q86WV6: 4ef4 4ef5 4emt 4emu 4f5d 4f5e 4f5w 4f5y 4f9e 4f9g 4ksy 4loh 4qxo 4qxp 4qxq 4qxr 5bqx 5jej

(-) Related Entries Specified in the PDB File

4loh 4loj 4lok 4lol