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(-) Description

Title :  CRYSTAL STRUCTURE OF STING CTD COMPLEX WITH C-DI-GMP
 
Authors :  S. Ouyang, H. Ru, N. Shaw, Y. Jiang, F. Niu, Y. Zhu, W. Qiu, Y. Li, Z. -J. Liu
Date :  29 Mar 12  (Deposition) - 16 May 12  (Release) - 03 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sting/Mita/Eris/Mpys/Tmem173, Innate Immune System, Type I Interferon, Dimerization, C-Di-Gmp, 5 Helices And 5 Strands In Single Domain, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Ouyang, X. Song, Y. Wang, H. Ru, N. Shaw, Y. Jiang, F. Niu, Y. Zhu, W. Qiu, K. Parvatiyar, Y. Li, R. Zhang, G. Cheng, Z. J. Liu
Structural Analysis Of The Sting Adaptor Protein Reveals A Hydrophobic Dimer Interface And Mode Of Cyclic Di-Gmp Binding
Immunity V. 36 1073 2012
PubMed-ID: 22579474  |  Reference-DOI: 10.1016/J.IMMUNI.2012.03.019

(-) Compounds

Molecule 1 - TRANSMEMBRANE PROTEIN 173
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentC-TERMINAL DOMAIN
    GeneSTING/MITA/ERIS/MPYS/TMEM173
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR OF IRF3 ACTIVATION, HMITA, STIMULATOR OF INTERFERON GENES PROTEIN, HSTING

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1C2E1Ligand/Ion9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
2CA2Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:162 , TYR A:167 , GLU A:260 , THR A:263 , PRO A:264 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:520 , HOH A:550 , SER B:162 , GLY B:166 , TYR B:167 , THR B:263 , PRO B:264BINDING SITE FOR RESIDUE C2E A 401
2AC2SOFTWAREASP A:205 , GLU A:316 , HOH A:506 , HOH A:544 , HOH A:546BINDING SITE FOR RESIDUE CA A 402
3AC3SOFTWAREVAL B:341 , HOH B:536BINDING SITE FOR RESIDUE CA B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EF4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:306 -Asn A:307

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EF4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EF4)

(-) Exons   (0, 0)

(no "Exon" information available for 4EF4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains d4ef4a_ A: Tyrosinase cofactor MelC1                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee.......hhhhhh..eeeeee.........eeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ef4 A 152 NFNVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPFSLSQEVLRHLRQEEKEEVTV 343
                                   161       171       181       191       201       211       221      |240       250       260       270       280       290       300       310      |325       335        
                                                                                                      228|                                                                            317|                    
                                                                                                       238                                                                             323                    

Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4ef4b_ B: Tyrosinase cofactor MelC1                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..........eeeeee.......hhhhhh..eeeeee......eeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeee......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ef4 B 152 NFNVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPASFSLSQEVLRHLRQEEKEEVTV 343
                                   161       171       181       191       201       211       221      |243       253       263       273       283       293       303       313    || 326       336       
                                                                                                      228|                                                                          318|                     
                                                                                                       241                                                                           322                     

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EF4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EF4)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_HUMAN | Q86WV64ef5 4emt 4emu 4f5d 4f5e 4f5w 4f5y 4f9e 4f9g 4ksy 4loh 4loi 4qxo 4qxp 4qxq 4qxr 5bqx 5jej

(-) Related Entries Specified in the PDB File

4ef5