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(-) Description

Title :  CRYSTAL STRUCTURE OF STING IN COMPLEX WITH CGAMP
 
Authors :  X. Zhang, Z. J. Chen, X. W. Zhang
Date :  18 May 13  (Deposition) - 12 Jun 13  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Innate Immunity, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhang, H. Shi, J. Wu, X. Zhang, L. Sun, C. Chen, Z. J. Chen
Cyclic Gmp-Amp Containing Mixed Phosphodiester Linkages Is An Endogenous High-Affinity Ligand For Sting.
Mol. Cell V. 51 226 2013
PubMed-ID: 23747010  |  Reference-DOI: 10.1016/J.MOLCEL.2013.05.022

(-) Compounds

Molecule 1 - STIMULATOR OF INTERFERON GENES PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 138-379
    Gene: TMEM173, ERIS, MITA, STING
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HSTING, ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR OF IRF3 ACTIVATION, HMITA, TRANSMEMBRANE PROTEIN 173

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
11SY1Ligand/IonCGAMP
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
11SY2Ligand/IonCGAMP

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:162 , TYR A:163 , GLY A:166 , TYR A:167 , ARG A:232 , ARG A:238 , VAL A:239 , TYR A:240 , GLU A:260 , THR A:263 , PRO A:264 , HOH A:601 , HOH A:602 , HOH A:605 , HOH A:607 , HOH A:615 , HOH A:640BINDING SITE FOR RESIDUE 1SY A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KSY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KSY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KSY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KSY)

(-) Exons   (0, 0)

(no "Exon" information available for 4KSY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains d4ksya_ A: Tyrosinase cofactor MelC1                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeee.......hhhhhh..eeeeee...eeeee..eeeeee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......eeeeee.....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ksy A 152 NFNVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDRAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPSFSLSQEVLRHLRQE 336
                                   161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     ||325       335 
                                                                                                                                                                                               317|              
                                                                                                                                                                                                322
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KSY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KSY)

(-) Gene Ontology  (36, 36)

Asymmetric Unit(hide GO term definitions)

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  4ksy
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_HUMAN | Q86WV6: 4ef4 4ef5 4emt 4emu 4f5d 4f5e 4f5w 4f5y 4f9e 4f9g 4loh 4loi 4qxo 4qxp 4qxq 4qxr 5bqx 5jej

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4KSY)