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(-) Description

Title :  CRYSTAL STRUCTURE OF MSTING IN COMPLEX WITH C[G(3',5')PA(3',5')P]
 
Authors :  P. Gao, D. J. Patel
Date :  12 Jul 13  (Deposition) - 14 Aug 13  (Release) - 02 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Innate Immunity, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Gao, M. Ascano, T. Zillinger, W. Wang, P. Dai, A. A. Serganov, B. L. Gaffney, S. Shuman, R. A. Jones, L. Deng, G. Hartmann, W. Barchet, T. Tuschl, D. J. Patel
Structure-Function Analysis Of Sting Activation By C[G(2', 5')Pa(3', 5')P] And Targeting By Antiviral Dmxaa.
Cell(Cambridge, Mass. ) V. 154 748 2013
PubMed-ID: 23910378  |  Reference-DOI: 10.1016/J.CELL.2013.07.023

(-) Compounds

Molecule 1 - STIMULATOR OF INTERFERON GENES PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-DI-GMP-BINDING DOMAIN
    Gene: TMEM173, ERIS MITA, MPYS, STING
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: MSTING, ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR OF IRF3 ACTIVATION, MMITA, TRANSMEMBRANE PROTEIN 173

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11YD1Ligand/Ion2-AMINO-9-[(2R,3R,3AR,5S,7AS,9R,10R,10AR,12R,14AS)-9-(6-AMINO-9H-PURIN-9-YL)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECIN-2-YL]-1,9-DIHYDRO-6H-PURIN-6-ONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:162 , GLY A:165 , TYR A:166 , ARG A:237 , VAL A:238 , TYR A:239 , THR A:262 , PRO A:263 , HOH A:413 , HOH A:467 , TYR B:162 , TYR B:166 , ILE B:234 , ARG B:237 , VAL B:238 , TYR B:239 , GLU B:259 , THR B:262 , PRO B:263 , HOH B:503 , HOH B:504 , HOH B:549 , HOH B:550 , HOH B:552 , HOH B:553BINDING SITE FOR RESIDUE 1YD B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LOK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala B:274 -Lys B:275
2Lys B:275 -Ala B:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LOK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LOK)

(-) Exons   (0, 0)

(no "Exon" information available for 4LOK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains d4loka_ A: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...........eeeeee.......hhhhh...eeeeee...eeeee..eeeeee..eeeeeee..eeeeeeeeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhheeeeee.........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lok A 154 VAHGLAWSYYIGYLRLILPGLQARIRMFNQLHNNMLSGAGSRRLYILFPLDCGVPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVYSNSVYEILENGQPAGVCILEYATPLQTLFAMSQDAKAGFSREDRLEQAKLFCRTLEEILEDVPESRNNCRLIVYQEPTDGNSFSLSQEVLRHIRQ 334
                                   163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 


Chain B from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains d4lokb_ B: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.....hhhhh.eeeeee.......hhhhhh..eeeeee...eeeee..eeeeee..eeeeeee..eeeeeeeeee.hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh....hhh.eeeeee.........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lok B 155 AHGLAWSYYIGYLRLILPGLQARIRMFNQLHNNMLSGAGSRRLYILFPLDCGVPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVYSNSVYEILENGQPAGVCILEYATPLQTLFAMSQDAKAGFSREDRLEQAKLFCRTLEEILEDVPESRNNCRLIVYQEPTDGNSFSLSQEVLRHIRQ 334
                                   164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LOK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LOK)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_MOUSE | Q3TBT3: 4jc5 4kby 4kc0 4loj 4lol 4yp1

(-) Related Entries Specified in the PDB File

4loh 4loi 4loj 4lol