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(-) Description

Title :  CRYSTAL STRUCTURE OF STING COMPLEX WITH CYCLIC DI-GMP.
 
Authors :  V. Kabaleeswaran, H. Wu
Date :  18 May 12  (Deposition) - 25 Jul 12  (Release) - 01 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Interferon, Immune System C-Di-Gmp Dimerisation, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Yin, Y. Tian, V. Kabaleeswaran, X. Jiang, D. Tu, M. J. Eck, Z. J. Chen, H. Wu
Cyclic Di-Gmp Sensing Via The Innate Immune Signaling Protein Sting.
Mol. Cell V. 46 735 2012
PubMed-ID: 22705373  |  Reference-DOI: 10.1016/J.MOLCEL.2012.05.029

(-) Compounds

Molecule 1 - TRANSMEMBRANE PROTEIN 173
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Fragment: C-TERMINAL DOMAIN (UNP RESIDUES 139-379)
    Gene: TMEM173, ERIS, MITA, STING
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR OF IRF3 ACTIVATION, HMITA, STIMULATOR OF INTERFERON GENES PROTEIN, HSTING

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1C2E1Ligand/Ion9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:162 , TYR A:167 , THR A:263 , PRO A:264 , THR A:267 , SER C:162 , TYR C:167 , THR C:263 , PRO C:264 , THR C:267BINDING SITE FOR RESIDUE C2E A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F9G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F9G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F9G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F9G)

(-) Exons   (0, 0)

(no "Exon" information available for 4F9G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains d4f9ga_ A: Tyrosinase cofactor MelC1                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee.......hhhhhh..eeeeeee....eeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f9g A 154 NVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPNNCRLIAYQEPSFSLSQEVLRHLRQEEKEEVTV 343
                                   163       173       183     ||194       204       214       224  ||   246       256       266       276       286       296      |309       323       333       343
                                                             189|                                 227|                                                            303|       317|                     
                                                              191                                  240                                                             307        322                     


Chain C from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains d4f9gc_ C: Tyrosinase cofactor MelC1                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhh..eeeeeee....eeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f9g C 154 NVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPNNCRLIAYQEPFSLSQEVLRHLRQEEKEEVTV 343
                                   163       173       183     ||194       204       214       224 ||    246       256       266       276       286       296      |309       324       334         
                                                             189|                                226|                                                             303|       317|                    
                                                              191                                 239                                                              307        323
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F9G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F9G)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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  STING_HUMAN | Q86WV6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_HUMAN | Q86WV6: 4ef4 4ef5 4emt 4emu 4f5d 4f5e 4f5w 4f5y 4f9e 4ksy 4loh 4loi 4qxo 4qxp 4qxq 4qxr 5bqx 5jej

(-) Related Entries Specified in the PDB File

4f9e