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(-) Description

Title :  CRYSTAL STRUCTURE OF HSTING(S162A/Q266I) IN COMPLEX WITH DMXAA
 
Authors :  P. Gao, D. J. Patel
Date :  21 Jul 14  (Deposition) - 10 Sep 14  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Immune System, Innate Immunity, Cgamp Binding, Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Gao, T. Zillinger, W. Wang, M. Ascano, P. Dai, G. Hartmann, T. Tuschl L. Deng, W. Barchet, D. J. Patel
Binding-Pocket And Lid-Region Substitutions Render Human Sting Sensitive To The Species-Specific Drug Dmxaa.
Cell Rep V. 8 1668 2014
PubMed-ID: 25199835  |  Reference-DOI: 10.1016/J.CELREP.2014.08.010

(-) Compounds

Molecule 1 - STIMULATOR OF INTERFERON GENES PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL DOMAIN (UNP RESIDUES 155-341)
    Gene: TMEM173, ERIS, MITA, STING
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HSTING, ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR OF IRF3 ACTIVATION, HMITA, TRANSMEMBRANE PROTEIN 173

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
11YE2Ligand/Ion(5,6-DIMETHYL-9-OXO-9H-XANTHEN-4-YL)ACETIC ACID
2SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:162 , TYR A:167 , THR A:263 , PRO A:264 , THR A:267 , HOH A:501 , ALA B:162 , GLY B:166 , ALA B:233 , ARG B:238 , 1YE B:401BINDING SITE FOR RESIDUE 1YE A 401
2AC2SOFTWARETYR A:186 , ASP A:223BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREGLY A:166 , ALA A:233 , ARG A:238 , 1YE A:401 , THR B:263 , PRO B:264 , THR B:267 , HOH B:502 , HOH B:526BINDING SITE FOR RESIDUE 1YE B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QXQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QXQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QXQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QXQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QXQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeeeee.......hhhhhh..eeeeee...ee.........ee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qxq A 154 SVAHGLAWAYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDRAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLITLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQ 335
                                   163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333  


Chain B from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeeeee.......hhhhhh..eeeeee...ee.........ee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qxq B 154 SVAHGLAWAYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDRAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLITLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQ 335
                                   163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QXQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QXQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QXQ)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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  4qxq
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  STING_HUMAN | Q86WV6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_HUMAN | Q86WV6: 4ef4 4ef5 4emt 4emu 4f5d 4f5e 4f5w 4f5y 4f9e 4f9g 4ksy 4loh 4loi 4qxo 4qxp 4qxr 5bqx 5jej

(-) Related Entries Specified in the PDB File

4qxo 4qxp 4qxr