Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  (M)L214G MUTANT OF THE RHODOBACTER SPHAEROIDES REACTION CENTER
 
Authors :  R. G. Saer, A. Hardjasa, M. E. Murphy, J. T. Beatty
Date :  04 Jan 13  (Deposition) - 01 May 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  H,L,M
Keywords :  Electron Transfer, Chromatophore, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. G. Saer, A. Hardjasa, F. I. Rosell, A. G. Mauk, M. E. Murphy, J. T. Beatty
Role Of Rhodobacter Sphaeroides Photosynthetic Reaction Center Residue M214 In The Composition, Absorbance Properties, And Conformations Of Ha And Ba Cofactors.
Biochemistry V. 52 2206 2013
PubMed-ID: 23480277  |  Reference-DOI: 10.1021/BI400207M

(-) Compounds

Molecule 1 - REACTION CENTER PROTEIN L CHAIN
    Chains: L
    Engineered: YES
    Expression System: RHODOBACTER SPHAEROIDES
    Expression System Strain: 2.4.1
    Expression System Taxid: 1063
    Expression System Vector Type: PLASMID
    Gene: PUFL, PUHA
    Mutation: YES
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063
    Strain: 2.4.1
    Synonym: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT
 
Molecule 2 - REACTION CENTER PROTEIN M CHAIN
    Chains: M
    Engineered: YES
    Expression System: RHODOBACTER SPHAEROIDES
    Expression System Strain: 2.4.1
    Expression System Taxid: 1063
    Expression System Vector Type: PLASMID
    Gene: PUFM
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063
    Strain: 2.4.1
    Synonym: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT
 
Molecule 3 - REACTION CENTER PROTEIN H CHAIN
    Chains: H
    Engineered: YES
    Expression System: RHODOBACTER SPHAEROIDES
    Expression System Strain: 2.4.1
    Expression System Taxid: 1063
    Expression System Vector Type: PLASMID
    Gene: PUFL, PUHA
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063
    Strain: 2.4.1
    Synonym: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : HLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (11, 35)

Asymmetric/Biological Unit (11, 35)
No.NameCountTypeFull Name
1BCL4Ligand/IonBACTERIOCHLOROPHYLL A
2BPH2Ligand/IonBACTERIOPHEOPHYTIN A
3FE1Ligand/IonFE (III) ION
4GOL12Ligand/IonGLYCEROL
5HTO2Ligand/IonHEPTANE-1,2,3-TRIOL
6K1Ligand/IonPOTASSIUM ION
7LDA6Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
8PC11Ligand/Ion1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
9PO43Ligand/IonPHOSPHATE ION
10SPO1Ligand/IonSPHEROIDENE
11U102Ligand/IonUBIQUINONE-10

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREBCL M:402BINDING SITE FOR RESIDUE LDA L 301
02AC2SOFTWAREU10 L:304BINDING SITE FOR RESIDUE LDA L 302
03AC3SOFTWAREALA L:93 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , VAL L:241 , BCL L:305 , TYR M:210 , GLY M:214 , TRP M:252 , MET M:256 , BCL M:401BINDING SITE FOR RESIDUE BPH L 303
04AC4SOFTWARETHR L:182 , ALA L:186 , LEU L:189 , HIS L:190 , LEU L:193 , VAL L:194 , GLU L:212 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , LDA L:302 , PC1 M:408BINDING SITE FOR RESIDUE U10 L 304
05AC5SOFTWAREPHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , VAL L:157 , THR L:160 , TYR L:162 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BPH L:303 , TYR M:210 , BCL M:401 , BCL M:403 , U10 M:406BINDING SITE FOR RESIDUE BCL L 305
06AC6SOFTWAREHIS H:126 , GLU L:72 , TYR L:73 , LYS L:82 , HOH L:420 , THR M:21BINDING SITE FOR RESIDUE PO4 L 306
07AC7SOFTWAREGLN L:87 , TRP L:142BINDING SITE FOR RESIDUE HTO L 307
08AC8SOFTWARELYS H:62 , THR H:63 , PHE H:64 , GOL H:301 , HOH H:438 , ALA L:198 , ASN L:199 , PRO L:200 , HOH L:413BINDING SITE FOR RESIDUE GOL L 308
09AC9SOFTWAREALA L:78BINDING SITE FOR RESIDUE GOL L 309
10BC1SOFTWARESER L:52 , VAL L:66 , TYR L:67 , LEU L:80 , ALA L:81 , GLY L:83 , TRP L:86BINDING SITE FOR RESIDUE GOL L 310
11BC2SOFTWARETYR L:148BINDING SITE FOR RESIDUE GOL L 311
12BC3SOFTWAREPRO H:67 , GLU H:122 , HOH H:420 , HOH H:421 , ARG L:207 , THR L:208 , PRO L:209 , LEU M:235 , GLU M:236BINDING SITE FOR RESIDUE GOL L 312
13BC4SOFTWAREPHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , LEU L:219 , SER M:59 , PHE M:67 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , BCL M:402 , BCL M:403BINDING SITE FOR RESIDUE BPH L 313
14BC5SOFTWAREGLU H:45 , GLY H:47 , ILE H:85 , SER L:4 , ARG L:7 , HOH L:415 , HOH L:450 , HOH L:451 , HOH L:453 , HOH L:454 , HOH L:456BINDING SITE FOR RESIDUE GOL L 314
15BC6SOFTWARELDA H:304 , GOL H:307 , TYR L:128 , PHE L:146 , HIS L:153 , LEU L:154 , BPH L:303 , BCL L:305 , PHE M:197 , PRO M:200 , GLY M:203 , LEU M:204 , ILE M:206 , ALA M:207 , TYR M:210 , GLY M:211 , HOH M:501BINDING SITE FOR RESIDUE BCL M 401
16BC7SOFTWAREHIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , LDA L:301 , BPH L:313 , HOH L:402 , MET M:122 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:403 , SPO M:407BINDING SITE FOR RESIDUE BCL M 402
17BC8SOFTWAREVAL L:157 , TYR L:162 , PHE L:181 , BCL L:305 , BPH L:313 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:402 , PC1 M:408BINDING SITE FOR RESIDUE BCL M 403
18BC9SOFTWARELEU M:38 , TRP M:41BINDING SITE FOR RESIDUE LDA M 404
19CC1SOFTWAREHIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266BINDING SITE FOR RESIDUE FE M 405
20CC2SOFTWARELDA H:304 , PHE L:29 , GLY L:35 , TRP L:100 , ARG L:103 , BCL L:305 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268BINDING SITE FOR RESIDUE U10 M 406
21CC3SOFTWAREPHE M:67 , ILE M:70 , GLY M:71 , TRP M:75 , SER M:119 , TRP M:157 , GLY M:161 , TRP M:171 , ILE M:179 , HIS M:182 , BCL M:402BINDING SITE FOR RESIDUE SPO M 407
22CC4SOFTWAREVAL L:220 , U10 L:304 , SER M:30 , GLY M:31 , VAL M:32 , GLY M:33 , BCL M:403BINDING SITE FOR RESIDUE PC1 M 408
23CC5SOFTWAREASN M:28 , GLY M:53 , SER M:54BINDING SITE FOR RESIDUE PO4 M 409
24CC6SOFTWAREPRO L:28 , MET M:256 , GLY M:257BINDING SITE FOR RESIDUE GOL M 410
25CC7SOFTWAREGOL H:301 , LDA H:309 , HOH H:451 , ASN L:199 , HIS M:145 , ARG M:267 , LDA M:412BINDING SITE FOR RESIDUE PO4 M 411
26CC8SOFTWAREHIS M:145 , TRP M:148 , ILE M:270 , PO4 M:411BINDING SITE FOR RESIDUE LDA M 412
27CC9SOFTWAREGLU H:34 , LYS H:62 , HOH H:451 , ASN L:199 , GOL L:308 , ARG M:267 , PO4 M:411BINDING SITE FOR RESIDUE GOL H 301
28DC1SOFTWAREALA H:25 , TYR H:29BINDING SITE FOR RESIDUE GOL H 302
29DC2SOFTWARETRP H:21BINDING SITE FOR RESIDUE GOL H 303
30DC3SOFTWAREGLN H:32 , TYR H:40 , GOL H:307 , ARG M:253 , BCL M:401 , U10 M:406BINDING SITE FOR RESIDUE LDA H 304
31DC4SOFTWAREARG H:177 , PHE H:178 , GLN H:194 , GLU H:230 , CYS H:234 , SER M:227 , ARG M:228 , PHE M:229 , GLY M:230 , ARG M:233BINDING SITE FOR RESIDUE GOL H 305
32DC5SOFTWAREMET H:134 , ALA H:137 , PHE H:140 , HOH H:434 , HOH H:482BINDING SITE FOR RESIDUE K H 306
33DC6SOFTWARELEU H:24 , LDA H:304 , PHE M:208 , MET M:272 , BCL M:401BINDING SITE FOR RESIDUE GOL H 307
34DC7SOFTWARESER H:200 , ASN H:201 , ARG H:202BINDING SITE FOR RESIDUE HTO H 308
35DC8SOFTWAREGLY H:26 , PO4 M:411BINDING SITE FOR RESIDUE LDA H 309

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IN5)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly M:48 -Pro M:49
2Tyr H:40 -Pro H:41
3Val H:75 -Pro H:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IN5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IN5)

(-) Exons   (0, 0)

(no "Exon" information available for 4IN5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains d4in5h1 H:11-35          d4in5h2 H:36-250 automated matches                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..........................eeeee....eeeee...........eee........eee..hhhhhhhhhhh.................eee.hhh...eeee.......eeee....eeeeeeeeeee....eeeeeeee.....eeeee.hhhee....eee...hhhhh............hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4in5 H  11 DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS 250
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250


Chain L from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4in5l_ L: L (light) subunit                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh..............ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4in5 L   1 ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING 281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 


Chain M from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4in5m_ M: M (medium) subunit                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee...........hhhhh......hhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4in5 M   1 AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAGLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNHG 302
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IN5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IN5)

(-) Gene Ontology  (13, 74)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BCL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    BPH  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HTO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    K  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    LDA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PC1  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SPO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    U10  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly M:48 - Pro M:49   [ RasMol ]  
    Tyr H:40 - Pro H:41   [ RasMol ]  
    Val H:75 - Pro H:76   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4in5
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RCEH_RHOS4 | Q3J170
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEH_RHOSH | P0C0Y7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEL_RHOS4 | Q3J1A5
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEL_RHOSH | P0C0Y8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEM_RHOS4 | Q3J1A6
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RCEM_RHOSH | P0C0Y9
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  RCEH_RHOS4 | Q3J170
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEH_RHOSH | P0C0Y7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEL_RHOS4 | Q3J1A5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEL_RHOSH | P0C0Y8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEM_RHOS4 | Q3J1A6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RCEM_RHOSH | P0C0Y9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RCEH_RHOS4 | Q3J170: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2rcr 2wx5 4in6 4n7l 4rcr 5lri
        RCEH_RHOSH | P0C0Y7: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2gmr 2gnu 2hg3 2hg9 2hh1 2hhk 2hit 2hj6 2j8c 2j8d 2jiy 2jj0 2rcr 2uws 2uwt 2uwu 2uwv 2uww 2ux3 2ux4 2ux5 2uxj 2uxk 2uxl 2uxm 2wx5 3dsy 3dta 3dtr 3dts 3du2 3du3 3duq 3i4d 3v3y 3v3z 3zum 3zuw 4h99 4h9l 4hbh 4hbj 4in6 4in7 4lwy 4n7k 4n7l 4rcr 4tqq 4v9g 5lse 5v33
        RCEL_RHOS4 | Q3J1A5: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2gmr 2rcr 2wx5 4in6 4n7l 4rcr 5lri
        RCEL_RHOSH | P0C0Y8: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2gmr 2gnu 2hg3 2hg9 2hh1 2hhk 2hit 2hj6 2j8c 2j8d 2jiy 2jj0 2rcr 2uws 2uwt 2uwu 2uwv 2uww 2ux3 2ux4 2ux5 2uxj 2uxk 2uxl 2uxm 2wx5 3dsy 3dta 3dtr 3dts 3du2 3du3 3duq 3i4d 3v3y 3v3z 3zum 3zuw 4h99 4h9l 4hbh 4hbj 4in6 4in7 4lwy 4n7k 4n7l 4rcr 4tqq 4v9g 5lse 5v33
        RCEM_RHOS4 | Q3J1A6: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2rcr 2wx5 4in6 4n7l 4rcr 5lri
        RCEM_RHOSH | P0C0Y9: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2gmr 2gnu 2hg3 2hg9 2hh1 2hhk 2hit 2hj6 2j8c 2j8d 2jiy 2jj0 2rcr 2uws 2uwt 2uwu 2uwv 2uww 2ux3 2ux4 2ux5 2uxj 2uxk 2uxl 2uxm 2wx5 3dsy 3dta 3dtr 3dts 3du2 3du3 3duq 3i4d 3v3y 3v3z 3zum 3zuw 4h99 4h9l 4hbh 4hbj 4in6 4in7 4lwy 4n7k 4n7l 4rcr 4tqq 4v9g 5lse 5v33

(-) Related Entries Specified in the PDB File

4in6 4in7