2UX5 - JenaLib

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , HOH L:2081 , MET M:122 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:1305 , LDA M:1312 , BPH M:1314 , SPO M:1316	BINDING SITE FOR RESIDUE BCL M1304
02	AC2	SOFTWARE	VAL L:157 , TYR L:162 , BCL L:1287 , MET M:122 , ALA M:153 , LEU M:156 , TRP M:157 , LEU M:160 , THR M:186 , ASN M:187 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:1304 , BPH M:1314	BINDING SITE FOR RESIDUE BCL M1305
03	AC3	SOFTWARE	TYR L:128 , PHE L:146 , HIS L:153 , LEU L:154 , BPH L:1285 , BCL L:1287 , HOH L:2112 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LEU M:214 , LDA M:1306	BINDING SITE FOR RESIDUE BCL L1282
04	AC4	SOFTWARE	BCL L:1282 , PRO M:200 , GLY M:203 , LEU M:204 , PHE M:208 , LDA M:1308 , GOL M:1318 , HOH M:2121	BINDING SITE FOR RESIDUE LDA M1306
05	AC5	SOFTWARE	PHE M:7 , TRP M:41 , PHE M:42	BINDING SITE FOR RESIDUE LDA M1307
06	AC6	SOFTWARE	GLN H:32 , TYR H:40 , ARG M:253 , PHE M:258 , LDA M:1306 , LDA M:1309 , U10 M:1315	BINDING SITE FOR RESIDUE LDA M1308
07	AC7	SOFTWARE	PHE M:258 , LDA M:1308	BINDING SITE FOR RESIDUE LDA M1309
08	AC8	SOFTWARE	TYR L:148 , ILE L:150	BINDING SITE FOR RESIDUE LDA L1283
09	AC9	SOFTWARE	VAL L:220 , GLY L:221 , UQ2 L:1286 , VAL M:32 , GLY M:33 , LDA M:1311 , HOH M:2122	BINDING SITE FOR RESIDUE LDA M1310
10	BC1	SOFTWARE	LDA M:1310	BINDING SITE FOR RESIDUE LDA M1311
11	BC2	SOFTWARE	SER L:178 , BCL M:1304	BINDING SITE FOR RESIDUE LDA M1312
12	BC3	SOFTWARE	PHE L:179 , UQ2 L:1286 , HOH L:2113	BINDING SITE FOR RESIDUE LDA L1284
13	BC4	SOFTWARE	HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266	BINDING SITE FOR RESIDUE FE M1313
14	BC5	SOFTWARE	PHE L:181 , LEU L:185 , LEU L:189 , LEU L:219 , GLY M:63 , ALA M:125 , VAL M:126 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , THR M:277 , BCL M:1304 , BCL M:1305	BINDING SITE FOR RESIDUE BPH M1314
15	BC6	SOFTWARE	ALA L:93 , ALA L:96 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , ALA L:124 , TYR L:148 , GLY L:149 , VAL L:241 , BCL L:1282 , BCL L:1287 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256	BINDING SITE FOR RESIDUE BPH L1285
16	BC7	SOFTWARE	PHE L:29 , GLY L:35 , TRP L:100 , ARG L:103 , MET M:218 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , PHE M:258 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268 , LDA M:1308	BINDING SITE FOR RESIDUE U10 M1315
17	BC8	SOFTWARE	LEU L:189 , HIS L:190 , LEU L:193 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , LDA L:1284 , LEU M:47 , LDA M:1310 , HOH M:2100	BINDING SITE FOR RESIDUE UQ2 L1286
18	BC9	SOFTWARE	PHE L:97 , ALA L:124 , ILE L:125 , LEU L:131 , VAL L:157 , TYR L:162 , ASN L:166 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BCL L:1282 , BPH L:1285 , TYR M:210 , BCL M:1305	BINDING SITE FOR RESIDUE BCL L1287
19	CC1	SOFTWARE	PHE M:67 , ILE M:70 , GLY M:71 , TRP M:75 , SER M:119 , TRP M:157 , LEU M:160 , GLY M:161 , PHE M:162 , TRP M:171 , VAL M:175 , TYR M:177 , HIS M:182 , BCL M:1304	BINDING SITE FOR RESIDUE SPO M1316
20	CC2	SOFTWARE	ILE H:22 , PHE H:23 , TYR H:30 , GOL H:1252 , HOH H:2003 , ASN L:199 , GLY M:143 , LYS M:144 , HIS M:145 , TRP M:148 , ARG M:267 , TRP M:271 , HOH M:2123 , HOH M:2124	BINDING SITE FOR RESIDUE CDL M1317
21	CC3	SOFTWARE	HIS H:126 , HOH H:2107 , GLU L:72 , TYR L:73 , LYS L:82 , THR M:21	BINDING SITE FOR RESIDUE PO4 L1288
22	CC4	SOFTWARE	GLN L:87 , THR L:90 , TRP L:142 , HOH L:2115	BINDING SITE FOR RESIDUE HTO L1289
23	CC5	SOFTWARE	GLU H:34 , LYS H:62 , HOH H:2003 , ASN L:199 , GOL L:1290 , ARG M:267 , CDL M:1317	BINDING SITE FOR RESIDUE GOL H1252
24	CC6	SOFTWARE	LYS H:62 , THR H:63 , PHE H:64 , GOL H:1252 , ALA L:198 , ASN L:199 , PRO L:200 , HOH L:2085	BINDING SITE FOR RESIDUE GOL L1290
25	CC7	SOFTWARE	GLY L:77 , ALA L:78 , LEU L:80 , GLN L:87	BINDING SITE FOR RESIDUE GOL L1291
26	CC8	SOFTWARE	LDA M:1306	BINDING SITE FOR RESIDUE GOL M1318
27	CC9	SOFTWARE	ALA H:25	BINDING SITE FOR RESIDUE GOL H1253

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain H from PDB  Type:PROTEIN  Length:241
 aligned with RCEH_RHOSH | P0C0Y7 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:241
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 
           RCEH_RHOSH    11 DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKSV 251
               SCOP domains d2ux5h1 H:11-35          d2ux5h2 H:36-251 Photosynthetic reaction centre                                                                                                                                                                          SCOP domains
               CATH domains -2ux5H01 H:12-116 Photosynthetic Reaction Center, subunit H, domain 1                                     2ux5H02 H:117-249 Photosynthetic Reaction Center, subunit H, domain 2                                                                -- CATH domains
               Pfam domains PRCH-2ux5H02 H:11-137                                                                                                          ---PRC-2ux5H01 H:141-212                                                   --------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh..........................eeeee....eeeee...........eee........eee..hhhhhhhhhhh.................eee.hhh...eeee.......eeee....eeeeeeeeeee....eeeeeeeee....eeeee.hhhee....eee...hhhhh............hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ux5 H  11 DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKSV 251
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250

Chain L from PDB  Type:PROTEIN  Length:281
 aligned with RCEL_RHOSH | P0C0Y8 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:281
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281 
           RCEL_RHOSH     2 ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING 282
               SCOP domains d2ux5l_ L: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2ux5L01 L:1-163 Membrane spanning alpha-helix pairs                                                                                                                2ux5L02 L:164-263 Membrane spanning alpha-helix pairs                                               ------------------ CATH domains
               Pfam domains ----------------------------Photo_RC-2ux5L01 L:29-272                                                                                                                                                                                                                           --------- Pfam domains
         Sec.struct. author .....hhhhh..............ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------REACTION_CENTER            ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ux5 L   1 ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING 281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain M from PDB  Type:PROTEIN  Length:303
 aligned with RCEM_RHOSH | P0C0Y9 from UniProtKB/Swiss-Prot  Length:308

    Alignment length:303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   
           RCEM_RHOSH     2 AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNHGM 304
               SCOP domains d2ux5m_ M: automated matches                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2ux5M01 M:1-143 Membrane spanning alpha-helix pairs                                                                                            2ux5M02 M:144-303 Membrane spanning alpha-helix pairs                                                                                                            CATH domains
               Pfam domains -------------------------------------------------Photo_RC-2ux5M01 M:50-303                                                                                                                                                                                                                                      Pfam domains
         Sec.struct. author ..........eee...........hhhh.........hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------REACTION_CENTER            ---------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ux5 M   1 AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNHGM 303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (3, 4)

CATH Domains (3, 6)

Pfam Domains (3, 4)

Gene Ontology (13, 37)

Asymmetric/Biological Unit(hide GO term definitions)

Chain H (RCEH_RHOSH | P0C0Y7)

molecular function
	GO:0042314	bacteriochlorophyll binding	Interacting selectively and non-covalently with bacteriochlorophyll, a form of chlorophyll found in photosynthetic bacteria, such as the purple and green bacteria. There are several types, designated a to g. Bacteriochlorophyll a and bacteriochlorophyll b are structurally similar to the chlorophyll a and chlorophyll b found in plants.
	GO:0016168	chlorophyll binding	Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0019684	photosynthesis, light reaction	The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030077	plasma membrane light-harvesting complex	A plasma membrane protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center. Examples of this complex are found in bacterial species.
	GO:0042717	plasma membrane-derived chromatophore membrane	The lipid bilayer associated with a plasma membrane-derived chromatophore; surrounds chromatophores that form complete vesicles.

Chain L (RCEL_RHOSH | P0C0Y8)

molecular function
	GO:0042314	bacteriochlorophyll binding	Interacting selectively and non-covalently with bacteriochlorophyll, a form of chlorophyll found in photosynthetic bacteria, such as the purple and green bacteria. There are several types, designated a to g. Bacteriochlorophyll a and bacteriochlorophyll b are structurally similar to the chlorophyll a and chlorophyll b found in plants.
	GO:0016168	chlorophyll binding	Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0019684	photosynthesis, light reaction	The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
	GO:0009772	photosynthetic electron transport in photosystem II	A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030077	plasma membrane light-harvesting complex	A plasma membrane protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center. Examples of this complex are found in bacterial species.
	GO:0042717	plasma membrane-derived chromatophore membrane	The lipid bilayer associated with a plasma membrane-derived chromatophore; surrounds chromatophores that form complete vesicles.

Chain M (RCEM_RHOSH | P0C0Y9)

molecular function
	GO:0042314	bacteriochlorophyll binding	Interacting selectively and non-covalently with bacteriochlorophyll, a form of chlorophyll found in photosynthetic bacteria, such as the purple and green bacteria. There are several types, designated a to g. Bacteriochlorophyll a and bacteriochlorophyll b are structurally similar to the chlorophyll a and chlorophyll b found in plants.
	GO:0016168	chlorophyll binding	Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0019684	photosynthesis, light reaction	The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
	GO:0009772	photosynthetic electron transport in photosystem II	A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030077	plasma membrane light-harvesting complex	A plasma membrane protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center. Examples of this complex are found in bacterial species.
	GO:0042717	plasma membrane-derived chromatophore membrane	The lipid bilayer associated with a plasma membrane-derived chromatophore; surrounds chromatophores that form complete vesicles.

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	Cis Peptide Bonds
		Ala H:138 - Gly H:139	[ RasMol ]
		Arg H:248 - Lys H:249	[ RasMol ]
		Gly M:48 - Pro M:49	[ RasMol ]
		Tyr H:40 - Pro H:41	[ RasMol ]
		Val H:75 - Pro H:76	[ RasMol ]

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1aig	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE D+QB- CHARGE SEPARATED STATE
1aij	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE
1ds8	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR CD2 +
1dv3	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-SEPARATED D+QAQB - STATE WITH THE PROTON TRANSFER INHIBITOR CD2+
1dv6	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR ZN2 +
1e14	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M197 REPLACED WITH ARG (CHAIN M, FM197R) AND GLY M203 REPLACED WITH ASP (CHAIN M, GM203D)
1e6d	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TRP M115REPLACED WITH PHE (CHAIN M, WM115F) PHE M197 REPLACED WITHARG (CHAIN M, FM197R)
1f6n	CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTERPRO L209-> TYR FROM THE PHOTOSYNTHETIC PURPLE BACTERIUMRHODOBACTER SPHAEROIDES
1fnp	CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTERPRO L209-> PHE FROM THE PHOTOSYNTHETIC PURPLE BACTERIUMRHODOBACTER SPHAEROIDES
1fnq	CRYSTAL STRUCTURE ANALYSIS OF THE MUTANT REACTION CENTERPRO L209-> GLU FROM THE PHOTOSYNTHETIC PURPLE BACTERIUMRHODOBACTER SPHAEROIDES
1jgw	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH THR M 21REPLACED WITH LEU
1jgx	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH THR M 21REPLACED WITH ASP
1jgy	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TYR M 76REPLACED WITH PHE
1jgz	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TYR M 76REPLACED WITH LYS
1jh0	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH GLU L 205REPLACED TO LEU
1k6l	PHOTOSYNETHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
1k6n	E(L212)A,D(L213)A DOUBLE MUTANT STRUCTURE OF PHOTOSYNTHETICREACTION CENTER FROM RHODOBACTER SPHAEROIDES
1kby	STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER WITHBACTERIOCHLOROPHYLL-BACTERIOPHEOPHYTIN HETERODIMER
1l9b	X-RAY STRUCTURE OF THE CYTOCHROME-C(2)- PHOTOSYNTHETICREACTION CENTER ELECTRON TRANSFER COMPLEX FROM RHODOBACTERSPHAEROIDES IN TYPE II CO-CRYSTALS
1l9j	X-RAY STRUCTURE OF THE CYTOCHROME-C(2)- PHOTOSYNTHETICREACTION CENTER ELECTRON TRANSFER COMPLEX FROM RHODOBACTERSPHAEROIDES IN TYPE I CO-CRYSTALS
1m3x	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
1mps	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M 197 REPLACED WITH ARG AND TYR M 177 REPLACED WITH PHE (CHAIN M, Y177F, F197R)
1ogv	LIPIDIC CUBIC PHASE CRYSTAL STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTRE FROM RHODOBACTER SPHAEROIDES
1pcr	PHOTOSYNTHETIC REACTION CENTER
1pss	PHOTOSYNTHETIC REACTION CENTER (WILD-TYPE)
1pst	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH HIS M 202 REPLACED WITH LEU (H(M 202)L)
1qov	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH ALA M260 REPLACED WITH TRP (CHAIN M, AM260W)
1rg5	STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTRE FROMRHODOBACTER SPHAEROIDES CAROTENOIDLESS STRAIN R-26.1
1rgn	STRUCTURE OF THE REACTION CENTRE FROM RHODOBACTERSPHAEROIDES CAROTENOIDLESS STRAIN R- 26.1 RECONSTITUTEDWITH SPHEROIDENE
1rqk	STRUCTURE OF THE REACTION CENTRE FROM RHODOBACTERSPHAEROIDES CAROTENOIDLESS STRAIN R- 26.1 RECONSTITUTEDWITH 3,4-DIHYDROSPHEROIDENE
1rvj	PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG H177 REPLACED WITH HIS
1ry5	PHOTOSYNTHETIC REACTION CENTER MUTANT FROM RHODOBACTERSPHAEROIDES WITH ASP L213 REPLACED WITH ASN
1rzh	PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG M233 REPLACED WITH CYS IN THE CHARGE-NEUTRAL DQAQBSTATE ( TRIGONAL FORM)
1rzz	PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG M233 REPLACED WITH CYS IN THE CHARGE-NEUTRAL DQAQBSTATE ( TETRAGONAL FORM)
1s00	PHOTOSYNTHETIC REACTION CENTER DOUBLE MUTANT FROMRHODOBACTER SPHAEROIDES WITH ASP L213 REPLACED WITH ASNAND ARG M233 REPLACED WITH CYS IN THE CHARGE-SEPARATEDD+QAQB- STATE
1umx	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH ARG M267 REPLACED WITH LEU (CHAIN M, R267L)
1yst	PHOTOSYNTHETIC REACTION CENTER (WILD TYPE)
1z9j	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
1z9k	PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
2bnp	LIPIDIC CUBIC PHASE GROWN REACTION CENTRE FROM RHODOBACTER SPHAEROIDES, GROUND STATE
2bns	LIPIDIC CUBIC PHASE GROWN REACTION CENTRE FROM RHODOBACTER SPHAEROIDES, EXCITED STATE
2boz	PHOTOSYNTHETIC REACTION CENTER MUTANT WITH GLY M203 REPLACED WITH LEU
2gmr	PHOTOSYNTHETIC REACTION CENTER MUTANT FROM RHODOBACTERSPHAEROIDES WITH ASP L210 REPLACED WITH ASN
2j8c	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 8 IN THE NEUTRAL STATE
2j8d	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 8 IN THE CHARGE- SEPARATED STATE
2rcr	PHOTOSYNTHETIC REACTION CENTER FROM (RHODOBACTER SPHAEROIDES)
2uws	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 6.5 IN THE CHARGE- SEPARATED STATE
2uwt	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 6.5 IN THE CHARGE- SEPARATED STATE 2ND DATASET
2uwu	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 6.5 IN THE NEUTRAL STATE, 2ND DATASET
2uwv	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 6.5 IN THE CHARGE- SEPARATED STATE, 3RD DATASET
2uww	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 6.5 IN THE NEUTRAL STATE
2ux3	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 9 IN THE NEUTRAL STATE
2ux4	X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 9 IN THE CHARGE- SEPARATED STATE, 2ND DATASET
4rcr	PHOTOSYNTHETIC REACTION CENTER

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (11, 29)

Sites (27, 27)