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4IN5
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
(M)L214G MUTANT OF THE RHODOBACTER SPHAEROIDES REACTION CENTER
Authors
:
R. G. Saer, A. Hardjasa, M. E. Murphy, J. T. Beatty
Date
:
04 Jan 13 (Deposition) - 01 May 13 (Release) - 01 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Electron Transfer, Chromatophore, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Saer, A. Hardjasa, F. I. Rosell, A. G. Mauk, M. E. Murphy, J. T. Beatty
Role Of Rhodobacter Sphaeroides Photosynthetic Reaction Center Residue M214 In The Composition, Absorbance Properties, And Conformations Of Ha And Ba Cofactors.
Biochemistry V. 52 2206 2013
[
close entry info
]
Hetero Components
(11, 35)
Info
All Hetero Components
01a: BACTERIOCHLOROPHYLL A (BCLa)
01b: BACTERIOCHLOROPHYLL A (BCLb)
01c: BACTERIOCHLOROPHYLL A (BCLc)
01d: BACTERIOCHLOROPHYLL A (BCLd)
02a: BACTERIOPHEOPHYTIN A (BPHa)
02b: BACTERIOPHEOPHYTIN A (BPHb)
03a: FE (III) ION (FEa)
04a: GLYCEROL (GOLa)
04b: GLYCEROL (GOLb)
04c: GLYCEROL (GOLc)
04d: GLYCEROL (GOLd)
04e: GLYCEROL (GOLe)
04f: GLYCEROL (GOLf)
04g: GLYCEROL (GOLg)
04h: GLYCEROL (GOLh)
04i: GLYCEROL (GOLi)
04j: GLYCEROL (GOLj)
04k: GLYCEROL (GOLk)
04l: GLYCEROL (GOLl)
05a: HEPTANE-1,2,3-TRIOL (HTOa)
05b: HEPTANE-1,2,3-TRIOL (HTOb)
06a: POTASSIUM ION (Ka)
07a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
07b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
07c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
07d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
07e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
07f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
08a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
09a: PHOSPHATE ION (PO4a)
09b: PHOSPHATE ION (PO4b)
09c: PHOSPHATE ION (PO4c)
10a: SPHEROIDENE (SPOa)
11a: UBIQUINONE-10 (U10a)
11b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
FE
1
Ligand/Ion
FE (III) ION
4
GOL
12
Ligand/Ion
GLYCEROL
5
HTO
2
Ligand/Ion
HEPTANE-1,2,3-TRIOL
6
K
1
Ligand/Ion
POTASSIUM ION
7
LDA
6
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
8
PC1
1
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
9
PO4
3
Ligand/Ion
PHOSPHATE ION
10
SPO
1
Ligand/Ion
SPHEROIDENE
11
U10
2
Ligand/Ion
UBIQUINONE-10
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
BCL M:402
BINDING SITE FOR RESIDUE LDA L 301
02
AC2
SOFTWARE
U10 L:304
BINDING SITE FOR RESIDUE LDA L 302
03
AC3
SOFTWARE
ALA L:93 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , VAL L:241 , BCL L:305 , TYR M:210 , GLY M:214 , TRP M:252 , MET M:256 , BCL M:401
BINDING SITE FOR RESIDUE BPH L 303
04
AC4
SOFTWARE
THR L:182 , ALA L:186 , LEU L:189 , HIS L:190 , LEU L:193 , VAL L:194 , GLU L:212 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , LDA L:302 , PC1 M:408
BINDING SITE FOR RESIDUE U10 L 304
05
AC5
SOFTWARE
PHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , VAL L:157 , THR L:160 , TYR L:162 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BPH L:303 , TYR M:210 , BCL M:401 , BCL M:403 , U10 M:406
BINDING SITE FOR RESIDUE BCL L 305
06
AC6
SOFTWARE
HIS H:126 , GLU L:72 , TYR L:73 , LYS L:82 , HOH L:420 , THR M:21
BINDING SITE FOR RESIDUE PO4 L 306
07
AC7
SOFTWARE
GLN L:87 , TRP L:142
BINDING SITE FOR RESIDUE HTO L 307
08
AC8
SOFTWARE
LYS H:62 , THR H:63 , PHE H:64 , GOL H:301 , HOH H:438 , ALA L:198 , ASN L:199 , PRO L:200 , HOH L:413
BINDING SITE FOR RESIDUE GOL L 308
09
AC9
SOFTWARE
ALA L:78
BINDING SITE FOR RESIDUE GOL L 309
10
BC1
SOFTWARE
SER L:52 , VAL L:66 , TYR L:67 , LEU L:80 , ALA L:81 , GLY L:83 , TRP L:86
BINDING SITE FOR RESIDUE GOL L 310
11
BC2
SOFTWARE
TYR L:148
BINDING SITE FOR RESIDUE GOL L 311
12
BC3
SOFTWARE
PRO H:67 , GLU H:122 , HOH H:420 , HOH H:421 , ARG L:207 , THR L:208 , PRO L:209 , LEU M:235 , GLU M:236
BINDING SITE FOR RESIDUE GOL L 312
13
BC4
SOFTWARE
PHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , LEU L:219 , SER M:59 , PHE M:67 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , BCL M:402 , BCL M:403
BINDING SITE FOR RESIDUE BPH L 313
14
BC5
SOFTWARE
GLU H:45 , GLY H:47 , ILE H:85 , SER L:4 , ARG L:7 , HOH L:415 , HOH L:450 , HOH L:451 , HOH L:453 , HOH L:454 , HOH L:456
BINDING SITE FOR RESIDUE GOL L 314
15
BC6
SOFTWARE
LDA H:304 , GOL H:307 , TYR L:128 , PHE L:146 , HIS L:153 , LEU L:154 , BPH L:303 , BCL L:305 , PHE M:197 , PRO M:200 , GLY M:203 , LEU M:204 , ILE M:206 , ALA M:207 , TYR M:210 , GLY M:211 , HOH M:501
BINDING SITE FOR RESIDUE BCL M 401
16
BC7
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , LDA L:301 , BPH L:313 , HOH L:402 , MET M:122 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:403 , SPO M:407
BINDING SITE FOR RESIDUE BCL M 402
17
BC8
SOFTWARE
VAL L:157 , TYR L:162 , PHE L:181 , BCL L:305 , BPH L:313 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:402 , PC1 M:408
BINDING SITE FOR RESIDUE BCL M 403
18
BC9
SOFTWARE
LEU M:38 , TRP M:41
BINDING SITE FOR RESIDUE LDA M 404
19
CC1
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M 405
20
CC2
SOFTWARE
LDA H:304 , PHE L:29 , GLY L:35 , TRP L:100 , ARG L:103 , BCL L:305 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268
BINDING SITE FOR RESIDUE U10 M 406
21
CC3
SOFTWARE
PHE M:67 , ILE M:70 , GLY M:71 , TRP M:75 , SER M:119 , TRP M:157 , GLY M:161 , TRP M:171 , ILE M:179 , HIS M:182 , BCL M:402
BINDING SITE FOR RESIDUE SPO M 407
22
CC4
SOFTWARE
VAL L:220 , U10 L:304 , SER M:30 , GLY M:31 , VAL M:32 , GLY M:33 , BCL M:403
BINDING SITE FOR RESIDUE PC1 M 408
23
CC5
SOFTWARE
ASN M:28 , GLY M:53 , SER M:54
BINDING SITE FOR RESIDUE PO4 M 409
24
CC6
SOFTWARE
PRO L:28 , MET M:256 , GLY M:257
BINDING SITE FOR RESIDUE GOL M 410
25
CC7
SOFTWARE
GOL H:301 , LDA H:309 , HOH H:451 , ASN L:199 , HIS M:145 , ARG M:267 , LDA M:412
BINDING SITE FOR RESIDUE PO4 M 411
26
CC8
SOFTWARE
HIS M:145 , TRP M:148 , ILE M:270 , PO4 M:411
BINDING SITE FOR RESIDUE LDA M 412
27
CC9
SOFTWARE
GLU H:34 , LYS H:62 , HOH H:451 , ASN L:199 , GOL L:308 , ARG M:267 , PO4 M:411
BINDING SITE FOR RESIDUE GOL H 301
28
DC1
SOFTWARE
ALA H:25 , TYR H:29
BINDING SITE FOR RESIDUE GOL H 302
29
DC2
SOFTWARE
TRP H:21
BINDING SITE FOR RESIDUE GOL H 303
30
DC3
SOFTWARE
GLN H:32 , TYR H:40 , GOL H:307 , ARG M:253 , BCL M:401 , U10 M:406
BINDING SITE FOR RESIDUE LDA H 304
31
DC4
SOFTWARE
ARG H:177 , PHE H:178 , GLN H:194 , GLU H:230 , CYS H:234 , SER M:227 , ARG M:228 , PHE M:229 , GLY M:230 , ARG M:233
BINDING SITE FOR RESIDUE GOL H 305
32
DC5
SOFTWARE
MET H:134 , ALA H:137 , PHE H:140 , HOH H:434 , HOH H:482
BINDING SITE FOR RESIDUE K H 306
33
DC6
SOFTWARE
LEU H:24 , LDA H:304 , PHE M:208 , MET M:272 , BCL M:401
BINDING SITE FOR RESIDUE GOL H 307
34
DC7
SOFTWARE
SER H:200 , ASN H:201 , ARG H:202
BINDING SITE FOR RESIDUE HTO H 308
35
DC8
SOFTWARE
GLY H:26 , PO4 M:411
BINDING SITE FOR RESIDUE LDA H 309
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d4in5h2 (H:36-250)
2a: SCOP_d4in5l_ (L:)
3a: SCOP_d4in5m_ (M:)
4a: SCOP_d4in5h1 (H:11-35)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
automated matches
(10)
Rhodobacter sphaeroides [TaxId: 1063]
(6)
1a
d4in5h2
H:36-250
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d4in5l_
L:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d4in5m_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Rhodobacter sphaeroides [TaxId: 1063]
(6)
4a
d4in5h1
H:11-35
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Protein & NOT Site
Protein & NOT PROSITE
Chain H
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Chain M
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