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(-) Description

Title :  PHOTOSYNTHETIC REACTION CENTER MUTANT WITH GLU L212 REPLACED WITH ALA (CHAIN L, EL212W), ASP L213 REPLACED WITH ALA (CHAIN L, DL213A) AND LEU M215 REPLACED WITH ALA (CHAIN M, LM215A)
 
Authors :  P. K. Fyfe, M. R. Jones
Date :  25 Aug 16  (Deposition) - 09 Nov 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  H,L,M
Keywords :  Transmembrane, Electron Transport, Photosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. M. Friebe, D. J. Swainsbury, P. K. Fyfe, W. Van Der Heijden, M. R. Jones, R. N. Frese
On The Mechanism Of Ubiquinone Mediated Photocurrent Generation By A Reaction Center Based Photocathode.
Biochim. Biophys. Acta V. 1857 1925 2016
PubMed-ID: 27687473  |  Reference-DOI: 10.1016/J.BBABIO.2016.09.011

(-) Compounds

Molecule 1 - REACTION CENTER PROTEIN L CHAIN
    Atcc: 8253
    Chains: L
    Engineered: YES
    Expression System: RHODOBACTER SPHAEROIDES
    Expression System Atcc Number: 8253
    Expression System Plasmid: PRKEH10D
    Expression System Taxid: 1063
    Expression System Variant: EL212A/DL213A/LM215A
    Gene: PUFL
    Mutation: YES
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063
    Other Details: GLU L212 TO ALA ENGINEERED MUTATION ASP L213 TO ALA ENGINEERED MUTATION
    Synonym: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT
 
Molecule 2 - REACTION CENTER PROTEIN M CHAIN
    Atcc: 8253
    Chains: M
    Engineered: YES
    Expression System: RHODOBACTER SPHAEROIDES
    Expression System Atcc Number: 8253
    Expression System Plasmid: PRKEH10D
    Expression System Taxid: 1063
    Gene: PUFM
    Mutation: YES
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063
    Other Details: LEU M215 ALA ENGINEERED MUTATION
    Synonym: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT
 
Molecule 3 - REACTION CENTER PROTEIN H CHAIN
    Atcc: 8253
    Chains: H
    Engineered: YES
    Expression System: RHODOBACTER SPHAEROIDES
    Expression System Atcc Number: 8253
    Expression System Plasmid: PRKEH10D
    Expression System Taxid: 1063
    Expression System Variant: EL212A/DL213A/LM215A
    Gene: PUHA
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 1063
    Other Details: MISSING N AND C-TERMINAL RESIDUES UNOBSERVED IN ELECTRON DENSITY
    Synonym: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : HLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 20)

Asymmetric/Biological Unit (9, 20)
No.NameCountTypeFull Name
1BCL4Ligand/IonBACTERIOCHLOROPHYLL A
2BPH2Ligand/IonBACTERIOPHEOPHYTIN A
3CDL1Ligand/IonCARDIOLIPIN
4D125Ligand/IonDODECANE
5FE1Ligand/IonFE (III) ION
6LDA3Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
7PO41Ligand/IonPHOSPHATE ION
8SPN1Ligand/IonSPEROIDENONE
9U102Ligand/IonUBIQUINONE-10

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , LEU L:131 , VAL L:157 , TYR L:162 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BCL L:302 , BPH L:303 , TYR M:210 , BCL M:402binding site for residue BCL L 301
02AC2SOFTWAREILE L:46 , TYR L:128 , LEU L:131 , PHE L:146 , ILE L:150 , HIS L:153 , LEU L:154 , BCL L:301 , BPH L:303 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LEU M:214 , LDA M:406 , HOH M:515binding site for residue BCL L 302
03AC3SOFTWAREALA L:93 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , ALA L:124 , VAL L:241 , BCL L:301 , BCL L:302 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256 , U10 M:404binding site for residue BPH L 303
04AC4SOFTWAREHIS L:190 , LEU L:193 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , TRP L:263binding site for residue U10 L 304
05AC5SOFTWAREHOH H:501binding site for residue D12 L 305
06AC6SOFTWAREHIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266binding site for residue FE L 306
07AC7SOFTWAREHIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , HOH L:408 , MET M:122 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:402 , BPH M:403 , SPN M:405binding site for residue BCL M 401
08AC8SOFTWAREVAL L:157 , TYR L:162 , PHE L:181 , BCL L:301 , LEU M:156 , LEU M:160 , THR M:186 , ASN M:187 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:401 , BPH M:403binding site for residue BCL M 402
09AC9SOFTWAREPHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , LEU L:219 , LEU M:60 , GLY M:63 , PHE M:67 , ALA M:125 , VAL M:126 , TRP M:129 , THR M:133 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , THR M:277 , BCL M:401 , BCL M:402binding site for residue BPH M 403
10AD1SOFTWAREGLY L:35 , BPH L:303 , MET M:218 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , THR M:261 , ILE M:265 , TRP M:268binding site for residue U10 M 404
11AD2SOFTWAREPHE M:67 , PHE M:68 , ILE M:70 , GLY M:71 , TRP M:75 , TRP M:115 , SER M:119 , TRP M:157 , MET M:158 , GLY M:161 , TRP M:171 , HIS M:182 , BCL M:401binding site for residue SPN M 405
12AD3SOFTWARETRP H:21 , LDA H:301 , HOH H:501 , BCL L:302 , PRO M:200 , GLY M:203 , LEU M:204binding site for residue LDA M 406
13AD4SOFTWARELDA H:301 , PRO L:28 , GLY M:257binding site for residue LDA M 407
14AD5SOFTWAREASN M:28 , GLY M:53 , SER M:54 , HOH M:508 , HOH M:545binding site for residue PO4 M 408
15AD6SOFTWARETYR H:30 , ASN L:199 , GLY M:143 , LYS M:144 , HIS M:145 , TRP M:148 , ARG M:267 , TRP M:271 , VAL M:274 , HOH M:562binding site for residue CDL M 409
16AD7SOFTWAREGLN H:32 , TYR H:40 , ARG M:253 , PHE M:258 , LDA M:406 , LDA M:407binding site for residue LDA H 301
17AD8SOFTWAREALA H:25 , D12 H:303 , D12 H:305binding site for residue D12 H 302
18AD9SOFTWARED12 H:302binding site for residue D12 H 303
19AE1SOFTWARED12 H:302binding site for residue D12 H 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LSE)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly M:48 -Pro M:49
2Tyr H:40 -Pro H:41
3Val H:75 -Pro H:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LSE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LSE)

(-) Exons   (0, 0)

(no "Exon" information available for 5LSE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..........................eeee......eeee...........eee........eee..hhhhhhhhhhh.................eee.hhh...eeeee......eeee....eeeeeeeeeee....eeeeeeee.....eeeee.hhhee....eee...hhhhh............hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lse H  11 DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS 250
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250


Chain L from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh..............ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lse L   1 ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHAATFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING 281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 


Chain M from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee...........hhhhh......hhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lse M   3 YQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALAFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNHG 302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LSE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LSE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LSE)

(-) Gene Ontology  (13, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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    Val H:75 - Pro H:76   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RCEH_RHOSH | P0C0Y7: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2gmr 2gnu 2hg3 2hg9 2hh1 2hhk 2hit 2hj6 2j8c 2j8d 2jiy 2jj0 2rcr 2uws 2uwt 2uwu 2uwv 2uww 2ux3 2ux4 2ux5 2uxj 2uxk 2uxl 2uxm 2wx5 3dsy 3dta 3dtr 3dts 3du2 3du3 3duq 3i4d 3v3y 3v3z 3zum 3zuw 4h99 4h9l 4hbh 4hbj 4in5 4in6 4in7 4lwy 4n7k 4n7l 4rcr 4tqq 4v9g 5v33
        RCEL_RHOSH | P0C0Y8: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2gmr 2gnu 2hg3 2hg9 2hh1 2hhk 2hit 2hj6 2j8c 2j8d 2jiy 2jj0 2rcr 2uws 2uwt 2uwu 2uwv 2uww 2ux3 2ux4 2ux5 2uxj 2uxk 2uxl 2uxm 2wx5 3dsy 3dta 3dtr 3dts 3du2 3du3 3duq 3i4d 3v3y 3v3z 3zum 3zuw 4h99 4h9l 4hbh 4hbj 4in5 4in6 4in7 4lwy 4n7k 4n7l 4rcr 4tqq 4v9g 5v33
        RCEM_RHOSH | P0C0Y9: 1aig 1aij 1ds8 1dv3 1dv6 1e14 1e6d 1f6n 1fnp 1fnq 1jgw 1jgx 1jgy 1jgz 1jh0 1k6l 1k6n 1kby 1l9b 1l9j 1m3x 1mps 1ogv 1pcr 1pss 1pst 1qov 1rg5 1rgn 1rqk 1rvj 1ry5 1rzh 1rzz 1s00 1umx 1yf6 1yst 1z9j 1z9k 2bnp 2bns 2boz 2gmr 2gnu 2hg3 2hg9 2hh1 2hhk 2hit 2hj6 2j8c 2j8d 2jiy 2jj0 2rcr 2uws 2uwt 2uwu 2uwv 2uww 2ux3 2ux4 2ux5 2uxj 2uxk 2uxl 2uxm 2wx5 3dsy 3dta 3dtr 3dts 3du2 3du3 3duq 3i4d 3v3y 3v3z 3zum 3zuw 4h99 4h9l 4hbh 4hbj 4in5 4in6 4in7 4lwy 4n7k 4n7l 4rcr 4tqq 4v9g 5v33

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LSE)