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4D9Q
Biol. Unit 1
Info
Asym.Unit (223 KB)
Biol.Unit 1 (112 KB)
Biol.Unit 2 (111 KB)
Biol.Unit 3 (218 KB)
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(1)
Title
:
INHIBITING ALTERNATIVE PATHWAY COMPLEMENT ACTIVATION BY TARGETING THE EXOSITE ON FACTOR D
Authors
:
J. M. Murray, C. Wiesmann
Date
:
11 Jan 12 (Deposition) - 22 Feb 12 (Release) - 02 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,D,E,H,L
Biol. Unit 1: A,H,L (1x)
Biol. Unit 2: B,D,E (1x)
Biol. Unit 3: A,B,D,E,H,L (1x)
Keywords
:
Factor D, Complement, Antibody, Exosite, Fab, Chymotrypsin, Protease, Hydrolase-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. J. Katschke, P. Wu, R. Ganesan, R. F. Kelley, M. A. Mathieu, P. E. Hass J. Murray, D. Kirchhofer, C. Wiesmann, M. Van Lookeren Campagne
Inhibiting Alternative Pathway Complement Activation By Targeting The Factor D Exosite.
J. Biol. Chem. V. 287 12886 2012
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
SO4
2
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:129A , VAL A:130 , VAL A:162 , LEU A:163 , ASP A:164 , ARG A:165 , MET A:181 , CYS A:182 , HOH A:492 , TYR H:54
BINDING SITE FOR RESIDUE GOL A 301
02
AC2
SOFTWARE
ASN A:222 , LYS A:223A , LYS A:224 , ASP L:30 , ASP L:31 , ASP L:32 , ZN L:302
BINDING SITE FOR RESIDUE GOL A 302
03
AC3
SOFTWARE
HIS A:57 , ASP A:61
BINDING SITE FOR RESIDUE ZN A 303
04
AC4
SOFTWARE
ARG A:150 , PRO A:152 , ASP A:153 , ARG A:154 , HOH A:500
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
SER A:190 , SER A:195 , THR A:214 , ARG A:218 , HOH A:515
BINDING SITE FOR RESIDUE SO4 A 305
06
AC9
SOFTWARE
HIS A:25 , GLU A:77 , GLU B:131
BINDING SITE FOR RESIDUE ZN B 304
07
BC4
SOFTWARE
HIS A:146 , HOH A:407 , ASP D:1
BINDING SITE FOR RESIDUE ZN D 303
08
BC6
SOFTWARE
GLY A:202 , HOH A:440 , LYS E:19 , SER E:71 , LEU E:72 , HOH E:450
BINDING SITE FOR RESIDUE GOL E 301
09
BC8
SOFTWARE
GLN H:113 , GLY H:114 , THR H:115 , LEU H:116 , PRO H:157 , HOH H:433
BINDING SITE FOR RESIDUE GOL H 301
10
BC9
SOFTWARE
HIS H:172 , ASN L:138
BINDING SITE FOR RESIDUE ZN H 302
11
CC1
SOFTWARE
HOH D:505 , ASP L:28
BINDING SITE FOR RESIDUE ZN L 301
12
CC2
SOFTWARE
GOL A:302 , ASP L:31 , ASP L:32
BINDING SITE FOR RESIDUE ZN L 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d4d9qd1 (D:1-107)
1b: SCOP_d4d9ql1 (L:1-107)
2a: SCOP_d4d9qd2 (D:108-213)
2b: SCOP_d4d9ql2 (L:108-213)
3a: SCOP_d4d9qa_ (A:)
3b: SCOP_d4d9qb_ (B:)
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Folds
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d4d9qd1
D:1-107
1b
d4d9ql1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d4d9qd2
D:108-213
2b
d4d9ql2
L:108-213
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
automated matches
(162)
Macaca mulatta [TaxId: 9541]
(1)
3a
d4d9qa_
A:
3b
d4d9qb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (223 KB)
Header - Asym.Unit
Biol.Unit 1 (112 KB)
Header - Biol.Unit 1
Biol.Unit 2 (111 KB)
Header - Biol.Unit 2
Biol.Unit 3 (218 KB)
Header - Biol.Unit 3
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