4EHZ - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   THE JAK1 KINASE DOMAIN IN COMPLEX WITH INHIBITOR

Authors :   P. J. Lupardus, M. Steffek

Date :   04 Apr 12 (Deposition) - 04 Jul 12 (Release) - 23 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.17

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Zak, R. Mendonca, M. Balazs, K. Barrett, P. Bergeron, W. S. Blair, C. Chang, G. Deshmukh, J. Devoss, P. S. Dragovich, C. Eigenbrot, N. Ghilardi, P. Gibbons, S. Gradl, C. Hamman, E. J. Hanan, E. Harstad, P. R. Hewitt, C. A. Hurley, T. Jin, A. Johnson, T. Johnson, J. R. Kenny, M. F. Koehler, P. Bir Kohli, J. J. Kulagowski, S. Labadie, J. Liao, M. Liimatta, Z. Lin, P. J. Lupardus, R. J. Maxey, J. M. Murray, R. Pulk, M. Rodriguez, S. Savage, S. Shia, M. Steffek, S. Ubhayakar, M. Ultsch, A. Van Abbema, S. I. Ward, L. Xiao, Y. Xiao
Discovery And Optimization Of C-2 Methyl Imidazopyrrolopyridines As Potent And Orally Bioavailable Jak1 Inhibitors With Selectivity Over Jak2.
J. Med. Chem. V. 55 6176 2012
PubMed-ID: 22698084 | Reference-DOI: 10.1021/JM300628C

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
	Chains	:	A, B, C, D
	EC Number	:	2.7.10.2
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Taxid	:	7108
	Fragment	:	KINASE DOMAIN, UNP RESIDUES 854-1154
	Gene	:	JAK1, JAK1A, JAK1B
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	JANUS KINASE 1, JAK-1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 24)

No.	Name	Count	Type	Full Name
1	EDO	12	Ligand/Ion	1,2-ETHANEDIOL
2	JAK	4	Ligand/Ion	2-METHYL-1-(PIPERIDIN-4-YL)-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDINE
3	PTR	8	Mod. Amino Acid	O-PHOSPHOTYROSINE

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	JAK	1	Ligand/Ion	2-METHYL-1-(PIPERIDIN-4-YL)-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDINE
3	PTR	2	Mod. Amino Acid	O-PHOSPHOTYROSINE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	JAK	1	Ligand/Ion	2-METHYL-1-(PIPERIDIN-4-YL)-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDINE
3	PTR	2	Mod. Amino Acid	O-PHOSPHOTYROSINE

Biological Unit 3 (3, 7)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	JAK	1	Ligand/Ion	2-METHYL-1-(PIPERIDIN-4-YL)-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDINE
3	PTR	2	Mod. Amino Acid	O-PHOSPHOTYROSINE

Biological Unit 4 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	JAK	1	Ligand/Ion	2-METHYL-1-(PIPERIDIN-4-YL)-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDINE
3	PTR	2	Mod. Amino Acid	O-PHOSPHOTYROSINE

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:881 , VAL A:889 , ALA A:906 , GLU A:957 , PHE A:958 , LEU A:959 , GLY A:962 , GLU A:966 , ARG A:1007 , ASN A:1008 , LEU A:1010 , EDO A:1202 , HOH A:1304 , HOH A:1336	BINDING SITE FOR RESIDUE JAK A 1201
02	AC2	SOFTWARE	ARG A:879 , PRO A:960 , GLY A:962 , JAK A:1201 , HOH A:1432	BINDING SITE FOR RESIDUE EDO A 1202
03	AC3	SOFTWARE	LEU A:977 , GLN A:980 , LEU A:1075 , TYR A:1077 , PRO A:1118	BINDING SITE FOR RESIDUE EDO A 1203
04	AC4	SOFTWARE	PRO A:867 , HIS A:869 , PHE A:870	BINDING SITE FOR RESIDUE EDO A 1204
05	AC5	SOFTWARE	LEU A:875 , GLU A:890 , LYS A:953	BINDING SITE FOR RESIDUE EDO A 1205
06	AC6	SOFTWARE	ASN A:976 , LYS A:978 , GLN A:979 , LYS A:982 , HOH A:1414	BINDING SITE FOR RESIDUE EDO A 1206
07	AC7	SOFTWARE	LEU B:881 , VAL B:889 , ALA B:906 , GLU B:957 , PHE B:958 , LEU B:959 , GLY B:962 , GLU B:966 , ARG B:1007 , ASN B:1008 , LEU B:1010 , HOH B:1314 , HOH B:1317 , HOH B:1424	BINDING SITE FOR RESIDUE JAK B 1201
08	AC8	SOFTWARE	GLU B:890 , VAL B:907 , LYS B:953 , HOH B:1329	BINDING SITE FOR RESIDUE EDO B 1202
09	AC9	SOFTWARE	LEU C:881 , VAL C:889 , ALA C:906 , GLU C:957 , PHE C:958 , LEU C:959 , GLY C:962 , GLU C:966 , ARG C:1007 , ASN C:1008 , LEU C:1010 , EDO C:1202 , HOH C:1302 , HOH C:1306	BINDING SITE FOR RESIDUE JAK C 1201
10	BC1	SOFTWARE	ARG C:879 , LEU C:881 , PRO C:960 , GLY C:962 , JAK C:1201 , HOH C:1448	BINDING SITE FOR RESIDUE EDO C 1202
11	BC2	SOFTWARE	GLN C:1098	BINDING SITE FOR RESIDUE EDO C 1203
12	BC3	SOFTWARE	LEU C:977 , GLN C:980 , LEU C:1075 , TYR C:1077 , HOH C:1375	BINDING SITE FOR RESIDUE EDO C 1204
13	BC4	SOFTWARE	ASP C:1040 , SER C:1043 , TYR C:1048 , CYS C:1052 , SER C:1056 , PHE C:1058 , MET D:1099	BINDING SITE FOR RESIDUE EDO C 1205
14	BC5	SOFTWARE	LEU D:881 , VAL D:889 , ALA D:906 , GLU D:957 , PHE D:958 , LEU D:959 , GLY D:962 , GLU D:966 , ARG D:1007 , ASN D:1008 , LEU D:1010 , GLY D:1020 , EDO D:1202 , HOH D:1302 , HOH D:1306	BINDING SITE FOR RESIDUE JAK D 1201
15	BC6	SOFTWARE	ARG D:879 , PRO D:960 , GLY D:962 , JAK D:1201 , HOH D:1386	BINDING SITE FOR RESIDUE EDO D 1202
16	BC7	SOFTWARE	ASP D:866 , PRO D:969 , LYS D:970 , ASN D:971 , LYS D:972 , ASN D:973 , HOH D:1368 , HOH D:1392	BINDING SITE FOR RESIDUE EDO D 1203

(no "SS Bond" information available for 4EHZ)

(no "Cis Peptide Bond" information available for 4EHZ)

(no "SAP(SNP)/Variant" information available for 4EHZ)

(no "PROSITE Motif" information available for 4EHZ)

(no "Exon" information available for 4EHZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4ehza_ A: automated matches                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhh........eeeeee......eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ehz A  858 EKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   867       877       887       897       907    || 922       932       942       952       962       972       982       992      1002      1012      1022      1032 ||   1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152  
                                                                                912|                                                                                                                1034-PTR                                                                                                                    
                                                                                 918                                                                                                                 1035-PTR

Chain B from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4ehzb_ B: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ehz B  865 VDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPNHIADLKKEIEILRNLYHENIVKYKGICTNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   874       884       894       904       918       928       938      |952       962       972       982       992      1002      1012      1022      1032 ||   1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152  
                                                                         912|                         945|                                                                                1034-PTR                                                                                                                    
                                                                          917                          950                                                                                 1035-PTR

Chain C from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4ehzc_ C: automated matches                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhh........eeeee...eeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ehz C  866 DPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPNHIADLKKEIEILRNLYHENIVKYKGICTGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   875       885       895       905      |919       929       939     ||954       964       974       984       994      1004      1014      1024      1034|     1044      1054      1064      1074      1084      1094      1104      1114      1124      1134      1144      1154
                                                                        912|                         945|                                                                               1034-PTR                                                                                                                    
                                                                         917                          951                                                                                1035-PTR

Chain D from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4ehzd_ D: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ehz D  865 VDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPNHIADLKKEIEILRNLYHENIVKYKGICTNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   874       884       894       904       918       928       938      |952       962       972       982       992      1002      1012      1022      1032 ||   1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152  
                                                                         912|                         945|                                                                                1034-PTR                                                                                                                    
                                                                          917                          950                                                                                 1035-PTR

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Asymmetric Unit

Classes(

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: automated matches (529)

Protein domain: automated matches (529)

Human (Homo sapiens) [TaxId: 9606] (438)

1a	d4ehza_	A:
1b	d4ehzb_	B:
1c	d4ehzc_	C:
1d	d4ehzd_	D:

(no "CATH Domain" information available for 4EHZ)

(no "Pfam Domain" information available for 4EHZ)

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	4ehz
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(no "Related Entries Specified in the PDB File" available for 4EHZ)

Description

Compounds

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Ligands, Modified Residues, Ions (3, 24)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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