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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN MENIN IN COMPLEX WITH MLL1 AND LEDGF
 
Authors :  J. Huang, B. Wan, M. Lei
Date :  16 Oct 11  (Deposition) - 15 Feb 12  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,M,N
Biol. Unit 1:  A,C,M  (1x)
Biol. Unit 2:  B,D,N  (1x)
Keywords :  Menin, Men1, Mll, Jund, Ledgf, Tpr, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Huang, B. Gurung, B. Wan, S. Matkar, N. A. Veniaminova, K. Wan, J. L. Merchant, X. Hua, M. Lei
The Same Pocket In Menin Binds Both Mll And Jund But Has Opposite Effects On Transcription.
Nature V. 482 542 2012
PubMed-ID: 22327296  |  Reference-DOI: 10.1038/NATURE10806

(-) Compounds

Molecule 1 - MENIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneMEN1, SCG2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - HISTONE-LYSINE N-METHYLTRANSFERASE 2A
    ChainsM, N
    EC Number2.1.1.43
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneKMT2A, ALL1, CXXC7, HRX, HTRX, MLL, MLL1, TRX1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymLYSINE N-METHYLTRANSFERASE 2A,ALL-1,CXXC-TYPE ZINC FINGER PROTEIN 7,MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA,MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA PROTEIN 1,TRITHORAX-LIKE PROTEIN,ZINC FINGER PROTEIN HRX
 
Molecule 3 - LENS EPITHELIUM-DERIVED GROWTH FACTOR
    ChainsC, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePSIP1, DFS70, LEDGF, PSIP2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCLL-ASSOCIATED ANTIGEN KW-7,DENSE FINE SPECKLES 70 KDA PROTEIN,DFS 70,TRANSCRIPTIONAL COACTIVATOR P75/P52

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDMN
Biological Unit 1 (1x)A C M 
Biological Unit 2 (1x) B D N

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 23)

Asymmetric Unit (5, 23)
No.NameCountTypeFull Name
10BR2Ligand/Ion(4BETA,8ALPHA,9R)-6'-METHOXY-10,11-DIHYDROCINCHONAN-9-OL
2CHD2Ligand/IonCHOLIC ACID
3GGB5Ligand/IonL-CANAVANINE
4GLV6Ligand/IonGLYOXYLIC ACID
5SO48Ligand/IonSULFATE ION
Biological Unit 1 (5, 14)
No.NameCountTypeFull Name
10BR1Ligand/Ion(4BETA,8ALPHA,9R)-6'-METHOXY-10,11-DIHYDROCINCHONAN-9-OL
2CHD1Ligand/IonCHOLIC ACID
3GGB4Ligand/IonL-CANAVANINE
4GLV4Ligand/IonGLYOXYLIC ACID
5SO44Ligand/IonSULFATE ION
Biological Unit 2 (5, 9)
No.NameCountTypeFull Name
10BR1Ligand/Ion(4BETA,8ALPHA,9R)-6'-METHOXY-10,11-DIHYDROCINCHONAN-9-OL
2CHD1Ligand/IonCHOLIC ACID
3GGB1Ligand/IonL-CANAVANINE
4GLV2Ligand/IonGLYOXYLIC ACID
5SO44Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:132 , TYR A:133 , PHE A:134 , LYS A:135 , CHD B:611BINDING SITE FOR RESIDUE CHD A 611
02AC2SOFTWARECHD A:611 , SER B:132 , TYR B:133 , PHE B:134 , LYS B:135BINDING SITE FOR RESIDUE CHD B 611
03AC3SOFTWARE0BR A:612 , TRP B:126 , SER B:130 , ARG B:131 , TRP B:198 , ASN B:203BINDING SITE FOR RESIDUE 0BR B 612
04AC4SOFTWARETYR A:133 , PHE A:134 , ARG A:137 , LYS A:151BINDING SITE FOR RESIDUE GGB A 613
05AC5SOFTWARETRP A:126 , LEU A:129 , SER A:130 , ARG A:131 , TRP A:198 , ASN A:203 , 0BR B:612BINDING SITE FOR RESIDUE 0BR A 612
06AC6SOFTWARETYR B:133 , PHE B:134 , ARG B:137 , LYS B:151BINDING SITE FOR RESIDUE GGB B 615
07AC7SOFTWAREARG A:108 , GLY A:111 , VAL A:112 , SER A:113 , ARG A:171BINDING SITE FOR RESIDUE GGB A 614
08AC8SOFTWARELYS A:135 , ASP A:136 , SER A:154 , TRP A:198 , GLY A:200BINDING SITE FOR RESIDUE GLV A 615
09AC9SOFTWAREGLU A:195 , THR A:197 , ARG A:206 , TYR A:222BINDING SITE FOR RESIDUE GLV A 616
10BC1SOFTWAREGLU A:408 , ALA A:411 , HIS A:412 , ARG A:415 , LEU A:551BINDING SITE FOR RESIDUE GLV A 617
11BC2SOFTWARELYS B:135 , ASP B:136 , SER B:154 , TRP B:198 , GLY B:200 , LYS B:201BINDING SITE FOR RESIDUE GLV B 616
12BC3SOFTWAREARG B:330 , GLY N:23 , ARG N:24 , ARG N:25 , GLY N:26BINDING SITE FOR RESIDUE SO4 N 1
13BC4SOFTWAREGLY M:14 , THR M:15 , GLY M:23 , ARG M:24 , ARG M:25 , GLY M:26BINDING SITE FOR RESIDUE SO4 M 2
14BC5SOFTWARETHR A:56 , LYS A:377 , ARG A:446BINDING SITE FOR RESIDUE SO4 A 618
15BC6SOFTWAREARG A:275 , LYS B:310BINDING SITE FOR RESIDUE SO4 A 619
16BC7SOFTWAREARG B:108 , GLY B:111 , GLY B:169 , ARG B:171BINDING SITE FOR RESIDUE SO4 B 617
17BC8SOFTWAREGGB C:109 , ARG C:405BINDING SITE FOR RESIDUE GGB C 108
18BC9SOFTWARELYS B:377 , ARG B:446BINDING SITE FOR RESIDUE SO4 B 618
19CC1SOFTWAREGGB C:108 , LEU C:363 , LYS C:364 , ILE C:365BINDING SITE FOR RESIDUE GGB C 109
20CC2SOFTWAREARG A:98 , ARG C:404 , THR C:417 , ASN C:421BINDING SITE FOR RESIDUE GLV C 113
21CC3SOFTWARETHR D:417 , ASN D:421BINDING SITE FOR RESIDUE GLV D 114
22CC4SOFTWAREGLY B:2 , LYS D:424 , ARG N:130BINDING SITE FOR RESIDUE SO4 N 154
23CC5SOFTWAREGLY A:2 , LYS C:424 , ARG M:130 , GLY M:134 , GLU M:135BINDING SITE FOR RESIDUE SO4 M 154

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U88)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Phe A:11 -Pro A:12
2Phe B:11 -Pro B:12
3Pro B:69 -Asp B:70
4Pro B:71 -Pro B:72
5Pro B:72 -Gly B:73
6Gly B:73 -Gly B:74
7Glu B:109 -Gly B:110
8Gly B:202 -Asn B:203
9Pro B:544 -Pro B:545
10Pro M:13 -Gly M:14
11Val M:108 -Gly M:109
12Gly M:109 -Pro M:110
13Pro M:110 -Gly M:111
14Pro N:13 -Gly N:14
15Val N:108 -Gly N:109
16Gly N:109 -Pro N:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (101, 201)

Asymmetric Unit (101, 201)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_005425P12LMEN1_HUMANDisease (MEN1)794728614A/BP12L
002UniProtVAR_005426L22RMEN1_HUMANDisease (MEN1)104894256A/BL22R
003UniProtVAR_005427E26KMEN1_HUMANDisease (MEN1)28931612A/BE26K
004UniProtVAR_021317A30GKMT2A_HUMANPolymorphism9332745M/NA30G
005UniProtVAR_005428L39WMEN1_HUMANDisease (MEN1)  ---A/BL39W
006UniProtVAR_005429G42DMEN1_HUMANDisease (MEN1)  ---A/BG42D
007UniProtVAR_005430E45GMEN1_HUMANDisease (MEN1)  ---A/BE45G
008UniProtVAR_039587E45KMEN1_HUMANDisease (MEN1)  ---A/BE45K
009UniProtVAR_039588R98LMEN1_HUMANDisease (MEN1)  ---A/BR98L
010UniProtVAR_039589G110EMEN1_HUMANDisease (MEN1)  ---A/BG110E
011UniProtVAR_005434K135IMEN1_HUMANDisease (MEN1)  ---A/BK135I
012UniProtVAR_005432H139DMEN1_HUMANDisease (MEN1)104894263A/BH139D
013UniProtVAR_039590H139PMEN1_HUMANDisease (MEN1)  ---A/BH139P
014UniProtVAR_039591H139RMEN1_HUMANDisease (MEN1)  ---A/BH139R
015UniProtVAR_005433H139YMEN1_HUMANDisease (MEN1)  ---A/BH139Y
016UniProtVAR_005436F144VMEN1_HUMANDisease (MEN1)  ---A/BF144V
017UniProtVAR_065153I147FMEN1_HUMANDisease (MEN1)  ---A/BI147F
018UniProtVAR_065154L157WMEN1_HUMANUnclassified  ---A/BL152W
019UniProtVAR_039592D158VMEN1_HUMANDisease (MEN1)  ---A/BD153V
020UniProtVAR_039593S159IMEN1_HUMANDisease (MEN1)  ---A/BS154I
021UniProtVAR_039594S160FMEN1_HUMANDisease (MEN1)  ---A/BS155F
022UniProtVAR_008017G161DMEN1_HUMANUnclassified  ---A/BG156D
023UniProtVAR_005437A165PMEN1_HUMANDisease (MEN1)  ---A/BA160P
024UniProtVAR_039595A165TMEN1_HUMANDisease (MEN1)  ---A/BA160T
025UniProtVAR_039596V167FMEN1_HUMANDisease (MEN1)  ---A/BV162F
026UniProtVAR_005438A169DMEN1_HUMANDisease (MEN1)  ---A/BA164D
027UniProtVAR_039597C170RMEN1_HUMANDisease (MEN1)  ---A/BC165R
028UniProtVAR_039598L173PMEN1_HUMANDisease (MEN1)386134256A/BL168P
029UniProtVAR_005440R176QMEN1_HUMANPolymorphism607969A/BR171Q
030UniProtVAR_005441D177YMEN1_HUMANDisease (MEN1)  ---A/BD172Y
031UniProtVAR_005442A181PMEN1_HUMANDisease (MEN1)376872829A/BA176P
032UniProtVAR_005443E184DMEN1_HUMANDisease (MEN1)  ---A/BE179D
033UniProtVAR_039599E184KMEN1_HUMANDisease (MEN1)  ---A/BE179K
034UniProtVAR_039600E184QMEN1_HUMANDisease (MEN1)  ---A/BE179Q
035UniProtVAR_039601H186RMEN1_HUMANDisease (MEN1)  ---A/BH181R
036UniProtVAR_039602W188RMEN1_HUMANUnclassified794728649A/BW183R
037UniProtVAR_005444W188SMEN1_HUMANDisease (MEN1)  ---A/BW183S
038UniProtVAR_005445V189EMEN1_HUMANDisease104894262A/BV184E
039UniProtVAR_064937V220FMEN1_HUMANUnclassified  ---A/BV215F
040UniProtVAR_039603V220MMEN1_HUMANDisease (MEN1)794728621A/BV215M
041UniProtVAR_005446L228PMEN1_HUMANDisease (MEN1)  ---A/BL223P
042UniProtVAR_039604G230RMEN1_HUMANDisease (MEN1)  ---A/BG225R
043UniProtVAR_039605R234LMEN1_HUMANDisease (MEN1)  ---A/BR229L
044UniProtVAR_039606V245FMEN1_HUMANDisease (MEN1)  ---A/BV240F
045UniProtVAR_039607C246FMEN1_HUMANDisease (MEN1)  ---A/BC241F
046UniProtVAR_008018C246RMEN1_HUMANDisease (MEN1)  ---A/BC241R
047UniProtVAR_039608C246YMEN1_HUMANDisease (MEN1)794728624A/BC241Y
048UniProtVAR_005447A247VMEN1_HUMANDisease (MEN1)  ---A/BA242V
049UniProtVAR_039609S258PMEN1_HUMANDisease (MEN1)  ---A/BS253P
050UniProtVAR_039610S258WMEN1_HUMANUnclassified  ---A/BS253W
051UniProtVAR_005448E260KMEN1_HUMANDisease104894268A/BE255K
052UniProtVAR_039611L264RMEN1_HUMANDisease (MEN1)  ---A/BL259R
053UniProtVAR_039612Q265PMEN1_HUMANDisease  ---A/BQ260P
054UniProtVAR_005449L269PMEN1_HUMANDisease (MEN1)  ---A/BL264P
055UniProtVAR_005450L272PMEN1_HUMANDisease  ---A/BL267P
056UniProtVAR_039614E279AMEN1_HUMANUnclassified  ---A/BE274A
057UniProtVAR_039615P282HMEN1_HUMANDisease  ---A/BP277H
058UniProtVAR_039616G286RMEN1_HUMANDisease (MEN1)  ---A/BG281R
059UniProtVAR_005451A289EMEN1_HUMANDisease (MEN1)  ---A/BA284E
060UniProtVAR_039617A289PMEN1_HUMANUnclassified  ---A/BA284P
061UniProtVAR_005452L291PMEN1_HUMANDisease (MEN1)  ---A/BL286P
062UniProtVAR_039618G310DMEN1_HUMANDisease  ---A/BG305D
063UniProtVAR_005453A314PMEN1_HUMANDisease (MEN1)  ---A/BA309P
064UniProtVAR_039619T316PMEN1_HUMANDisease (MEN1)  ---A/BT311P
065UniProtVAR_005454R319PMEN1_HUMANDisease (MEN1)  ---A/BR314P
066UniProtVAR_039620H322RMEN1_HUMANDisease (MEN1)  ---A/BH317R
067UniProtVAR_039621H322YMEN1_HUMANDisease (MEN1)  ---A/BH317Y
068UniProtVAR_039622P325LMEN1_HUMANDisease (MEN1)  ---A/BP320L
069UniProtVAR_039623P325RMEN1_HUMANDisease (MEN1)  ---A/BP320R
070UniProtVAR_039624A330PMEN1_HUMANDisease (MEN1)  ---A/BA325P
071UniProtVAR_005455A342DMEN1_HUMANDisease (MEN1)2071312A/BA337D
072UniProtVAR_039625A342PMEN1_HUMANDisease (MEN1)  ---A/BA337P
073UniProtVAR_005456W346RMEN1_HUMANDisease (MEN1)  ---A/BW341R
074UniProtVAR_039626A347PMEN1_HUMANDisease (MEN1)  ---A/BA342P
075UniProtVAR_005457T349RMEN1_HUMANDisease (MEN1)  ---A/BT344R
076UniProtVAR_039627I353NMEN1_HUMANDisease (MEN1)  ---A/BI348N
077UniProtVAR_039628Y358DMEN1_HUMANDisease (MEN1)  ---A/BY353D
078UniProtVAR_039629R360WMEN1_HUMANDisease (MEN1)  ---A/BR355W
079UniProtVAR_039630D362HMEN1_HUMANDisease (MEN1)  ---A/BD357H
080UniProtVAR_005458E364KMEN1_HUMANDisease (MEN1)387906552A/BE359K
081UniProtVAR_005460A373DMEN1_HUMANDisease (MEN1)  ---A/BA368D
082UniProtVAR_039631I377MMEN1_HUMANDisease (MEN1)  ---A/BI372M
083UniProtVAR_039632P378SMEN1_HUMANDisease (MEN1)  ---A/BP373S
084UniProtVAR_039633A390VMEN1_HUMANDisease (MEN1)  ---A/BA385V
085UniProtVAR_039634A416PMEN1_HUMANDisease (MEN1)  ---A/BA411P
086UniProtVAR_065155L418RMEN1_HUMANDisease (MEN1)  ---A/BL413R
087UniProtVAR_039635L419PMEN1_HUMANDisease (MEN1)  ---A/BL414P
088UniProtVAR_039636R420PMEN1_HUMANDisease (MEN1)  ---A/BR415P
089UniProtVAR_039637D423HMEN1_HUMANDisease (MEN1)104894264A/BD418H
090UniProtVAR_005461D423NMEN1_HUMANDisease (MEN1)104894264A/BD418N
091UniProtVAR_039638C426YMEN1_HUMANDisease (MEN1)386134249A/BC421Y
092UniProtVAR_039639W428SMEN1_HUMANDisease (MEN1)  ---A/BW423S
093UniProtVAR_039640S432RMEN1_HUMANDisease (MEN1)  ---A/BS427R
094UniProtVAR_039641W441CMEN1_HUMANDisease (MEN1)398124435A/BW436C
095UniProtVAR_005464W441RMEN1_HUMANDisease (MEN1)104894259A/BW436R
096UniProtVAR_039642L449PMEN1_HUMANDisease (MEN1)  ---A/BL444P
097UniProtVAR_005465F452SMEN1_HUMANDisease (MEN1)  ---A/BF447S
098UniProtVAR_039645P549SMEN1_HUMANDisease (MEN1)  ---BP544S
099UniProtVAR_039646T557SMEN1_HUMANPolymorphism121913035A/BT552S
100UniProtVAR_005467S560NMEN1_HUMANDisease (MEN1)863224527A/BS555N
101UniProtVAR_039647S560RMEN1_HUMANDisease (MEN1)  ---A/BS555R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (100, 100)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_005425P12LMEN1_HUMANDisease (MEN1)794728614AP12L
002UniProtVAR_005426L22RMEN1_HUMANDisease (MEN1)104894256AL22R
003UniProtVAR_005427E26KMEN1_HUMANDisease (MEN1)28931612AE26K
004UniProtVAR_021317A30GKMT2A_HUMANPolymorphism9332745MA30G
005UniProtVAR_005428L39WMEN1_HUMANDisease (MEN1)  ---AL39W
006UniProtVAR_005429G42DMEN1_HUMANDisease (MEN1)  ---AG42D
007UniProtVAR_005430E45GMEN1_HUMANDisease (MEN1)  ---AE45G
008UniProtVAR_039587E45KMEN1_HUMANDisease (MEN1)  ---AE45K
009UniProtVAR_039588R98LMEN1_HUMANDisease (MEN1)  ---AR98L
010UniProtVAR_039589G110EMEN1_HUMANDisease (MEN1)  ---AG110E
011UniProtVAR_005434K135IMEN1_HUMANDisease (MEN1)  ---AK135I
012UniProtVAR_005432H139DMEN1_HUMANDisease (MEN1)104894263AH139D
013UniProtVAR_039590H139PMEN1_HUMANDisease (MEN1)  ---AH139P
014UniProtVAR_039591H139RMEN1_HUMANDisease (MEN1)  ---AH139R
015UniProtVAR_005433H139YMEN1_HUMANDisease (MEN1)  ---AH139Y
016UniProtVAR_005436F144VMEN1_HUMANDisease (MEN1)  ---AF144V
017UniProtVAR_065153I147FMEN1_HUMANDisease (MEN1)  ---AI147F
018UniProtVAR_065154L157WMEN1_HUMANUnclassified  ---AL152W
019UniProtVAR_039592D158VMEN1_HUMANDisease (MEN1)  ---AD153V
020UniProtVAR_039593S159IMEN1_HUMANDisease (MEN1)  ---AS154I
021UniProtVAR_039594S160FMEN1_HUMANDisease (MEN1)  ---AS155F
022UniProtVAR_008017G161DMEN1_HUMANUnclassified  ---AG156D
023UniProtVAR_005437A165PMEN1_HUMANDisease (MEN1)  ---AA160P
024UniProtVAR_039595A165TMEN1_HUMANDisease (MEN1)  ---AA160T
025UniProtVAR_039596V167FMEN1_HUMANDisease (MEN1)  ---AV162F
026UniProtVAR_005438A169DMEN1_HUMANDisease (MEN1)  ---AA164D
027UniProtVAR_039597C170RMEN1_HUMANDisease (MEN1)  ---AC165R
028UniProtVAR_039598L173PMEN1_HUMANDisease (MEN1)386134256AL168P
029UniProtVAR_005440R176QMEN1_HUMANPolymorphism607969AR171Q
030UniProtVAR_005441D177YMEN1_HUMANDisease (MEN1)  ---AD172Y
031UniProtVAR_005442A181PMEN1_HUMANDisease (MEN1)376872829AA176P
032UniProtVAR_005443E184DMEN1_HUMANDisease (MEN1)  ---AE179D
033UniProtVAR_039599E184KMEN1_HUMANDisease (MEN1)  ---AE179K
034UniProtVAR_039600E184QMEN1_HUMANDisease (MEN1)  ---AE179Q
035UniProtVAR_039601H186RMEN1_HUMANDisease (MEN1)  ---AH181R
036UniProtVAR_039602W188RMEN1_HUMANUnclassified794728649AW183R
037UniProtVAR_005444W188SMEN1_HUMANDisease (MEN1)  ---AW183S
038UniProtVAR_005445V189EMEN1_HUMANDisease104894262AV184E
039UniProtVAR_064937V220FMEN1_HUMANUnclassified  ---AV215F
040UniProtVAR_039603V220MMEN1_HUMANDisease (MEN1)794728621AV215M
041UniProtVAR_005446L228PMEN1_HUMANDisease (MEN1)  ---AL223P
042UniProtVAR_039604G230RMEN1_HUMANDisease (MEN1)  ---AG225R
043UniProtVAR_039605R234LMEN1_HUMANDisease (MEN1)  ---AR229L
044UniProtVAR_039606V245FMEN1_HUMANDisease (MEN1)  ---AV240F
045UniProtVAR_039607C246FMEN1_HUMANDisease (MEN1)  ---AC241F
046UniProtVAR_008018C246RMEN1_HUMANDisease (MEN1)  ---AC241R
047UniProtVAR_039608C246YMEN1_HUMANDisease (MEN1)794728624AC241Y
048UniProtVAR_005447A247VMEN1_HUMANDisease (MEN1)  ---AA242V
049UniProtVAR_039609S258PMEN1_HUMANDisease (MEN1)  ---AS253P
050UniProtVAR_039610S258WMEN1_HUMANUnclassified  ---AS253W
051UniProtVAR_005448E260KMEN1_HUMANDisease104894268AE255K
052UniProtVAR_039611L264RMEN1_HUMANDisease (MEN1)  ---AL259R
053UniProtVAR_039612Q265PMEN1_HUMANDisease  ---AQ260P
054UniProtVAR_005449L269PMEN1_HUMANDisease (MEN1)  ---AL264P
055UniProtVAR_005450L272PMEN1_HUMANDisease  ---AL267P
056UniProtVAR_039614E279AMEN1_HUMANUnclassified  ---AE274A
057UniProtVAR_039615P282HMEN1_HUMANDisease  ---AP277H
058UniProtVAR_039616G286RMEN1_HUMANDisease (MEN1)  ---AG281R
059UniProtVAR_005451A289EMEN1_HUMANDisease (MEN1)  ---AA284E
060UniProtVAR_039617A289PMEN1_HUMANUnclassified  ---AA284P
061UniProtVAR_005452L291PMEN1_HUMANDisease (MEN1)  ---AL286P
062UniProtVAR_039618G310DMEN1_HUMANDisease  ---AG305D
063UniProtVAR_005453A314PMEN1_HUMANDisease (MEN1)  ---AA309P
064UniProtVAR_039619T316PMEN1_HUMANDisease (MEN1)  ---AT311P
065UniProtVAR_005454R319PMEN1_HUMANDisease (MEN1)  ---AR314P
066UniProtVAR_039620H322RMEN1_HUMANDisease (MEN1)  ---AH317R
067UniProtVAR_039621H322YMEN1_HUMANDisease (MEN1)  ---AH317Y
068UniProtVAR_039622P325LMEN1_HUMANDisease (MEN1)  ---AP320L
069UniProtVAR_039623P325RMEN1_HUMANDisease (MEN1)  ---AP320R
070UniProtVAR_039624A330PMEN1_HUMANDisease (MEN1)  ---AA325P
071UniProtVAR_005455A342DMEN1_HUMANDisease (MEN1)2071312AA337D
072UniProtVAR_039625A342PMEN1_HUMANDisease (MEN1)  ---AA337P
073UniProtVAR_005456W346RMEN1_HUMANDisease (MEN1)  ---AW341R
074UniProtVAR_039626A347PMEN1_HUMANDisease (MEN1)  ---AA342P
075UniProtVAR_005457T349RMEN1_HUMANDisease (MEN1)  ---AT344R
076UniProtVAR_039627I353NMEN1_HUMANDisease (MEN1)  ---AI348N
077UniProtVAR_039628Y358DMEN1_HUMANDisease (MEN1)  ---AY353D
078UniProtVAR_039629R360WMEN1_HUMANDisease (MEN1)  ---AR355W
079UniProtVAR_039630D362HMEN1_HUMANDisease (MEN1)  ---AD357H
080UniProtVAR_005458E364KMEN1_HUMANDisease (MEN1)387906552AE359K
081UniProtVAR_005460A373DMEN1_HUMANDisease (MEN1)  ---AA368D
082UniProtVAR_039631I377MMEN1_HUMANDisease (MEN1)  ---AI372M
083UniProtVAR_039632P378SMEN1_HUMANDisease (MEN1)  ---AP373S
084UniProtVAR_039633A390VMEN1_HUMANDisease (MEN1)  ---AA385V
085UniProtVAR_039634A416PMEN1_HUMANDisease (MEN1)  ---AA411P
086UniProtVAR_065155L418RMEN1_HUMANDisease (MEN1)  ---AL413R
087UniProtVAR_039635L419PMEN1_HUMANDisease (MEN1)  ---AL414P
088UniProtVAR_039636R420PMEN1_HUMANDisease (MEN1)  ---AR415P
089UniProtVAR_039637D423HMEN1_HUMANDisease (MEN1)104894264AD418H
090UniProtVAR_005461D423NMEN1_HUMANDisease (MEN1)104894264AD418N
091UniProtVAR_039638C426YMEN1_HUMANDisease (MEN1)386134249AC421Y
092UniProtVAR_039639W428SMEN1_HUMANDisease (MEN1)  ---AW423S
093UniProtVAR_039640S432RMEN1_HUMANDisease (MEN1)  ---AS427R
094UniProtVAR_039641W441CMEN1_HUMANDisease (MEN1)398124435AW436C
095UniProtVAR_005464W441RMEN1_HUMANDisease (MEN1)104894259AW436R
096UniProtVAR_039642L449PMEN1_HUMANDisease (MEN1)  ---AL444P
097UniProtVAR_005465F452SMEN1_HUMANDisease (MEN1)  ---AF447S
099UniProtVAR_039646T557SMEN1_HUMANPolymorphism121913035AT552S
100UniProtVAR_005467S560NMEN1_HUMANDisease (MEN1)863224527AS555N
101UniProtVAR_039647S560RMEN1_HUMANDisease (MEN1)  ---AS555R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (101, 101)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_005425P12LMEN1_HUMANDisease (MEN1)794728614BP12L
002UniProtVAR_005426L22RMEN1_HUMANDisease (MEN1)104894256BL22R
003UniProtVAR_005427E26KMEN1_HUMANDisease (MEN1)28931612BE26K
004UniProtVAR_021317A30GKMT2A_HUMANPolymorphism9332745NA30G
005UniProtVAR_005428L39WMEN1_HUMANDisease (MEN1)  ---BL39W
006UniProtVAR_005429G42DMEN1_HUMANDisease (MEN1)  ---BG42D
007UniProtVAR_005430E45GMEN1_HUMANDisease (MEN1)  ---BE45G
008UniProtVAR_039587E45KMEN1_HUMANDisease (MEN1)  ---BE45K
009UniProtVAR_039588R98LMEN1_HUMANDisease (MEN1)  ---BR98L
010UniProtVAR_039589G110EMEN1_HUMANDisease (MEN1)  ---BG110E
011UniProtVAR_005434K135IMEN1_HUMANDisease (MEN1)  ---BK135I
012UniProtVAR_005432H139DMEN1_HUMANDisease (MEN1)104894263BH139D
013UniProtVAR_039590H139PMEN1_HUMANDisease (MEN1)  ---BH139P
014UniProtVAR_039591H139RMEN1_HUMANDisease (MEN1)  ---BH139R
015UniProtVAR_005433H139YMEN1_HUMANDisease (MEN1)  ---BH139Y
016UniProtVAR_005436F144VMEN1_HUMANDisease (MEN1)  ---BF144V
017UniProtVAR_065153I147FMEN1_HUMANDisease (MEN1)  ---BI147F
018UniProtVAR_065154L157WMEN1_HUMANUnclassified  ---BL152W
019UniProtVAR_039592D158VMEN1_HUMANDisease (MEN1)  ---BD153V
020UniProtVAR_039593S159IMEN1_HUMANDisease (MEN1)  ---BS154I
021UniProtVAR_039594S160FMEN1_HUMANDisease (MEN1)  ---BS155F
022UniProtVAR_008017G161DMEN1_HUMANUnclassified  ---BG156D
023UniProtVAR_005437A165PMEN1_HUMANDisease (MEN1)  ---BA160P
024UniProtVAR_039595A165TMEN1_HUMANDisease (MEN1)  ---BA160T
025UniProtVAR_039596V167FMEN1_HUMANDisease (MEN1)  ---BV162F
026UniProtVAR_005438A169DMEN1_HUMANDisease (MEN1)  ---BA164D
027UniProtVAR_039597C170RMEN1_HUMANDisease (MEN1)  ---BC165R
028UniProtVAR_039598L173PMEN1_HUMANDisease (MEN1)386134256BL168P
029UniProtVAR_005440R176QMEN1_HUMANPolymorphism607969BR171Q
030UniProtVAR_005441D177YMEN1_HUMANDisease (MEN1)  ---BD172Y
031UniProtVAR_005442A181PMEN1_HUMANDisease (MEN1)376872829BA176P
032UniProtVAR_005443E184DMEN1_HUMANDisease (MEN1)  ---BE179D
033UniProtVAR_039599E184KMEN1_HUMANDisease (MEN1)  ---BE179K
034UniProtVAR_039600E184QMEN1_HUMANDisease (MEN1)  ---BE179Q
035UniProtVAR_039601H186RMEN1_HUMANDisease (MEN1)  ---BH181R
036UniProtVAR_039602W188RMEN1_HUMANUnclassified794728649BW183R
037UniProtVAR_005444W188SMEN1_HUMANDisease (MEN1)  ---BW183S
038UniProtVAR_005445V189EMEN1_HUMANDisease104894262BV184E
039UniProtVAR_064937V220FMEN1_HUMANUnclassified  ---BV215F
040UniProtVAR_039603V220MMEN1_HUMANDisease (MEN1)794728621BV215M
041UniProtVAR_005446L228PMEN1_HUMANDisease (MEN1)  ---BL223P
042UniProtVAR_039604G230RMEN1_HUMANDisease (MEN1)  ---BG225R
043UniProtVAR_039605R234LMEN1_HUMANDisease (MEN1)  ---BR229L
044UniProtVAR_039606V245FMEN1_HUMANDisease (MEN1)  ---BV240F
045UniProtVAR_039607C246FMEN1_HUMANDisease (MEN1)  ---BC241F
046UniProtVAR_008018C246RMEN1_HUMANDisease (MEN1)  ---BC241R
047UniProtVAR_039608C246YMEN1_HUMANDisease (MEN1)794728624BC241Y
048UniProtVAR_005447A247VMEN1_HUMANDisease (MEN1)  ---BA242V
049UniProtVAR_039609S258PMEN1_HUMANDisease (MEN1)  ---BS253P
050UniProtVAR_039610S258WMEN1_HUMANUnclassified  ---BS253W
051UniProtVAR_005448E260KMEN1_HUMANDisease104894268BE255K
052UniProtVAR_039611L264RMEN1_HUMANDisease (MEN1)  ---BL259R
053UniProtVAR_039612Q265PMEN1_HUMANDisease  ---BQ260P
054UniProtVAR_005449L269PMEN1_HUMANDisease (MEN1)  ---BL264P
055UniProtVAR_005450L272PMEN1_HUMANDisease  ---BL267P
056UniProtVAR_039614E279AMEN1_HUMANUnclassified  ---BE274A
057UniProtVAR_039615P282HMEN1_HUMANDisease  ---BP277H
058UniProtVAR_039616G286RMEN1_HUMANDisease (MEN1)  ---BG281R
059UniProtVAR_005451A289EMEN1_HUMANDisease (MEN1)  ---BA284E
060UniProtVAR_039617A289PMEN1_HUMANUnclassified  ---BA284P
061UniProtVAR_005452L291PMEN1_HUMANDisease (MEN1)  ---BL286P
062UniProtVAR_039618G310DMEN1_HUMANDisease  ---BG305D
063UniProtVAR_005453A314PMEN1_HUMANDisease (MEN1)  ---BA309P
064UniProtVAR_039619T316PMEN1_HUMANDisease (MEN1)  ---BT311P
065UniProtVAR_005454R319PMEN1_HUMANDisease (MEN1)  ---BR314P
066UniProtVAR_039620H322RMEN1_HUMANDisease (MEN1)  ---BH317R
067UniProtVAR_039621H322YMEN1_HUMANDisease (MEN1)  ---BH317Y
068UniProtVAR_039622P325LMEN1_HUMANDisease (MEN1)  ---BP320L
069UniProtVAR_039623P325RMEN1_HUMANDisease (MEN1)  ---BP320R
070UniProtVAR_039624A330PMEN1_HUMANDisease (MEN1)  ---BA325P
071UniProtVAR_005455A342DMEN1_HUMANDisease (MEN1)2071312BA337D
072UniProtVAR_039625A342PMEN1_HUMANDisease (MEN1)  ---BA337P
073UniProtVAR_005456W346RMEN1_HUMANDisease (MEN1)  ---BW341R
074UniProtVAR_039626A347PMEN1_HUMANDisease (MEN1)  ---BA342P
075UniProtVAR_005457T349RMEN1_HUMANDisease (MEN1)  ---BT344R
076UniProtVAR_039627I353NMEN1_HUMANDisease (MEN1)  ---BI348N
077UniProtVAR_039628Y358DMEN1_HUMANDisease (MEN1)  ---BY353D
078UniProtVAR_039629R360WMEN1_HUMANDisease (MEN1)  ---BR355W
079UniProtVAR_039630D362HMEN1_HUMANDisease (MEN1)  ---BD357H
080UniProtVAR_005458E364KMEN1_HUMANDisease (MEN1)387906552BE359K
081UniProtVAR_005460A373DMEN1_HUMANDisease (MEN1)  ---BA368D
082UniProtVAR_039631I377MMEN1_HUMANDisease (MEN1)  ---BI372M
083UniProtVAR_039632P378SMEN1_HUMANDisease (MEN1)  ---BP373S
084UniProtVAR_039633A390VMEN1_HUMANDisease (MEN1)  ---BA385V
085UniProtVAR_039634A416PMEN1_HUMANDisease (MEN1)  ---BA411P
086UniProtVAR_065155L418RMEN1_HUMANDisease (MEN1)  ---BL413R
087UniProtVAR_039635L419PMEN1_HUMANDisease (MEN1)  ---BL414P
088UniProtVAR_039636R420PMEN1_HUMANDisease (MEN1)  ---BR415P
089UniProtVAR_039637D423HMEN1_HUMANDisease (MEN1)104894264BD418H
090UniProtVAR_005461D423NMEN1_HUMANDisease (MEN1)104894264BD418N
091UniProtVAR_039638C426YMEN1_HUMANDisease (MEN1)386134249BC421Y
092UniProtVAR_039639W428SMEN1_HUMANDisease (MEN1)  ---BW423S
093UniProtVAR_039640S432RMEN1_HUMANDisease (MEN1)  ---BS427R
094UniProtVAR_039641W441CMEN1_HUMANDisease (MEN1)398124435BW436C
095UniProtVAR_005464W441RMEN1_HUMANDisease (MEN1)104894259BW436R
096UniProtVAR_039642L449PMEN1_HUMANDisease (MEN1)  ---BL444P
097UniProtVAR_005465F452SMEN1_HUMANDisease (MEN1)  ---BF447S
098UniProtVAR_039645P549SMEN1_HUMANDisease (MEN1)  ---BP544S
099UniProtVAR_039646T557SMEN1_HUMANPolymorphism121913035BT552S
100UniProtVAR_005467S560NMEN1_HUMANDisease (MEN1)863224527BS555N
101UniProtVAR_039647S560RMEN1_HUMANDisease (MEN1)  ---BS555R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U88)

(-) Exons   (4, 8)

Asymmetric Unit (4, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003807381bENSE00001871552chr9:15510993-15510815179PSIP1_HUMAN-00--
1.2bENST000003807382bENSE00002140211chr9:15510324-15510115210PSIP1_HUMAN1-24240--
1.3aENST000003807383aENSE00001132884chr9:15506635-1550655977PSIP1_HUMAN25-50260--
1.5ENST000003807385ENSE00001132876chr9:15490122-15489984139PSIP1_HUMAN50-96470--
1.7ENST000003807387ENSE00001089135chr9:15486929-15486825105PSIP1_HUMAN97-131350--
1.8bENST000003807388bENSE00001132860chr9:15486066-1548600463PSIP1_HUMAN132-152210--
1.9ENST000003807389ENSE00001132852chr9:15479685-1547958997PSIP1_HUMAN153-185330--
1.10ENST0000038073810ENSE00001132844chr9:15478550-1547847576PSIP1_HUMAN185-210260--
1.11aENST0000038073811aENSE00001132838chr9:15474235-15474007229PSIP1_HUMAN210-286770--
1.12aENST0000038073812aENSE00001420149chr9:15472748-15472630119PSIP1_HUMAN287-326400--
1.14ENST0000038073814ENSE00001132824chr9:15469991-1546993656PSIP1_HUMAN326-345200--
1.15ENST0000038073815ENSE00001132819chr9:15469334-1546926471PSIP1_HUMAN345-368242C:348-368
D:353-363
21
11
1.16ENST0000038073816ENSE00001132811chr9:15469056-15468955102PSIP1_HUMAN369-402342C:369-402
D:370-402
34
33
1.17ENST0000038073817ENSE00001132806chr9:15468841-15468628214PSIP1_HUMAN403-474722C:403-429
D:403-430 (gaps)
27
28
1.18ENST0000038073818ENSE00001089131chr9:15466857-15466746112PSIP1_HUMAN474-511380--
1.19ENST0000038073819ENSE00001486085chr9:15465578-154640641515PSIP1_HUMAN511-530200--

2.1aENST000003895061aENSE00002162629chr11:118307205-118307659455KMT2A_HUMAN-00--
2.5bENST000003895065bENSE00001633768chr11:118339490-11833955970KMT2A_HUMAN-00--
2.6aENST000003895066aENSE00001610993chr11:118342377-1183450302654KMT2A_HUMAN1-2982982M:6-135 (gaps)
N:6-134 (gaps)
130
129
2.7bENST000003895067bENSE00002192425chr11:118347520-118347697178KMT2A_HUMAN299-358600--
2.8aENST000003895068aENSE00001785290chr11:118348682-118348916235KMT2A_HUMAN358-436790--
2.9bENST000003895069bENSE00002148387chr11:118350889-11835095365KMT2A_HUMAN436-451160--
2.10aENST0000038950610aENSE00001660587chr11:118352430-118352807378KMT2A_HUMAN-00--
2.11ENST0000038950611ENSE00001619243chr11:118353137-11835321074KMT2A_HUMAN-00--
2.12aENST0000038950612aENSE00001735103chr11:118354898-118355029132KMT2A_HUMAN-00--
2.13ENST0000038950613ENSE00001703734chr11:118355577-118355690114KMT2A_HUMAN-00--
2.15ENST0000038950615ENSE00001775852chr11:118359329-118359475147KMT2A_HUMAN-00--
2.16ENST0000038950616ENSE00001798700chr11:118360507-11836060296KMT2A_HUMAN-00--
2.17ENST0000038950617ENSE00001621217chr11:118360844-118360964121KMT2A_HUMAN-00--
2.18aENST0000038950618aENSE00001785002chr11:118361911-118362024114KMT2A_HUMAN-00--
2.19ENST0000038950619ENSE00001611699chr11:118362459-118362643185KMT2A_HUMAN-00--
2.20bENST0000038950620bENSE00001749282chr11:118363772-118363945174KMT2A_HUMAN-00--
2.21ENST0000038950621ENSE00001625999chr11:118365003-118365113111KMT2A_HUMAN-00--
2.22ENST0000038950622ENSE00001642774chr11:118365409-11836548274KMT2A_HUMAN-00--
2.23ENST0000038950623ENSE00001729453chr11:118366415-118366608194KMT2A_HUMAN-00--
2.24ENST0000038950624ENSE00001671815chr11:118366976-118367082107KMT2A_HUMAN-00--
2.25aENST0000038950625aENSE00001513432chr11:118368651-11836872373KMT2A_HUMAN-00--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:477
 aligned with MEN1_HUMAN | O00255 from UniProtKB/Swiss-Prot  Length:615

    Alignment length:587
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       
           MEN1_HUMAN     2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTAQVPAPTASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQS 588
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...ee........eeeee...--..eeeee..hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh..............hhhhhhh-----h...hhhhhhhhhhhhhhhh.....eeee....eeeeehhhhheee................hhhhhhhh...hhhhh.ee.hhhhhhhhhhhh........eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh----------------hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhh..eee.---------------------------------------------------------------------------------------...eee..hhhhhhh.........hhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ----------L---------R---K------------W--D--G----------------------------------------------------L-----------E------------------------I---D----V--F---------WVIFD---P-F-DR--P--QY---P--D-R-RE------------------------------F-------P-R---L----------FFV----------P-K---RP---P--P------A--H---R--E-P------------------D---P-P--P--R--L----P-----------D---RP-R---N----D-W-H-K--------D---MS-----------V-------------------------P-RPP--H--Y-S---R--------C-------P--S--------------------------------------------------------------------------------------------------------S--N---------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------K---------------------------------------------------------------------------------------------P-------------------------T------------------K---S-------------------------------M-------------------------R-----------W------------------------------P--------------------------------Y--R----------------P--------------------------------------------------------------------------------N-----------------R----------------------------------------------------------------------------------------------------------------------R---------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------Q-------------------------------------------------------------Y------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
             SAPs(SNPs) (4) -----------------------------------------------------------------------------------------------------------------------------------------Y----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u88 A   2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPD--GGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFIT-----GTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEA----------------SALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVS---------------------------------------------------------------------------------------EGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQS 583
                                    11        21        31        41        51        61        |- |      81        91       101       111       121       131       141      |  -  |    156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        |-         -     | 406       416       426       436       446       456  |      -         -         -         -         -         -         -         -         -|      556       566       576       
                                                                                               70 73                                                                        148   149                                                                                                                                                                                                                                         385              402                                                      459                                                                                     547                                    

Chain B from PDB  Type:PROTEIN  Length:485
 aligned with MEN1_HUMAN | O00255 from UniProtKB/Swiss-Prot  Length:615

    Alignment length:586
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581      
           MEN1_HUMAN     2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTAQVPAPTASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQ 587
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..ee........eeee.........eeee..hhhhhhhhhhhhhhhhhh..hhhhh.......hhhhhhhhhhhhhh..............hhhhhhh-----h...hhhhhhhhhhhhhhhh.....eeee....eeeeehhhhheee................hhhhhhh.hhhhhhhh.ee.hhhhhhhhhhhh...eee..eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------------.hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhh..eee.------------------------------------------------------------.-----------------------......eee..hhhhhh..........hhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ----------L---------R---K------------W--D--G----------------------------------------------------L-----------E------------------------I---D----V--F---------WVIFD---P-F-DR--P--QY---P--D-R-RE------------------------------F-------P-R---L----------FFV----------P-K---RP---P--P------A--H---R--E-P------------------D---P-P--P--R--L----P-----------D---RP-R---N----D-W-H-K--------D---MS-----------V-------------------------P-RPP--H--Y-S---R--------C-------P--S------------------------------------------------------------------------------------------------S-------S--N--------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------K---------------------------------------------------------------------------------------------P-------------------------T------------------K---S-------------------------------M-------------------------R-----------W------------------------------P--------------------------------Y--R----------------P--------------------------------------------------------------------------------N-----------------R----------------------------------------------------------------------------------------------------------------------R--------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------Q-------------------------------------------------------------Y----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) -----------------------------------------------------------------------------------------------------------------------------------------Y---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u88 B   2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFIT-----GTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAG-------------QGSALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVS------------------------------------------------------------G-----------------------PPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQ 582
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141      |  -  |    156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386         -   |   406       416       426       436       446       456  |      -         -         -         -         -         -   |     -         -       546       556       566       576      
                                                                                                                                                                            148   149                                                                                                                                                                                                                                          386           400                                                        459                                                          520                     544                                      

Chain C from PDB  Type:PROTEIN  Length:82
 aligned with PSIP1_HUMAN | O75475 from UniProtKB/Swiss-Prot  Length:530

    Alignment length:82
                                   357       367       377       387       397       407       417       427  
          PSIP1_HUMAN   348 MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLV 429
               SCOP domains d3u88c_ C: automated matches                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.15            Exon 1.16  PDB: C:369-402         Exon 1.17  PDB: C:403-429   Transcript 1
                 3u88 C 348 MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLV 429
                                   357       367       377       387       397       407       417       427  

Chain D from PDB  Type:PROTEIN  Length:67
 aligned with PSIP1_HUMAN | O75475 from UniProtKB/Swiss-Prot  Length:530

    Alignment length:78
                                   362       372       382       392       402       412       422        
          PSIP1_HUMAN   353 QRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVG 430
               SCOP domains d3u88d_ D:       automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh.------.hhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhh-----.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.15       Exon 1.16  PDB: D:370-402         Exon 1.17 UniProt: 403-474   Transcript 1
                 3u88 D 353 QRIHAEIKNSL------VNRCIEALDELASLQVTMQQAQKHTEMITTLKKIR-----QVIMEKSTMLYNKFKNMFLVG 430
                                   362|      372       382       392       402 |     412       422        
                                    363    370                               404   410                    

Chain M from PDB  Type:PROTEIN  Length:56
 aligned with KMT2A_HUMAN | Q03164 from UniProtKB/Swiss-Prot  Length:3969

    Alignment length:130
                                    15        25        35        45        55        65        75        85        95       105       115       125       135
          KMT2A_HUMAN     6 RWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGE 135
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........-------hhhhhhh...eee....-------------------------------------------------------------------ee....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------G--------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.6a  PDB: M:6-135 (gaps) UniProt: 1-298 [INCOMPLETE]                                                                         Transcript 2
                 3u88 M   6 RWRFPARPGT-------GRRGLGGAPRQRVPALL-------------------------------------------------------------------RVGPGFDAALQVSAAIGTNLRRFRAVFGE 135
                                    15       |25        35   |     -         -         -         -         -         -         - |     115       125       135
                                    15      23              39                                                                 107                            

Chain N from PDB  Type:PROTEIN  Length:55
 aligned with KMT2A_HUMAN | Q03164 from UniProtKB/Swiss-Prot  Length:3969

    Alignment length:129
                                    15        25        35        45        55        65        75        85        95       105       115       125         
          KMT2A_HUMAN     6 RWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFG 134
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........-------hhhhhh....eee....-------------------------------------------------------------------ee....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------G-------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.6a  PDB: N:6-134 (gaps) UniProt: 1-298 [INCOMPLETE]                                                                        Transcript 2
                 3u88 N   6 RWRFPARPGT-------GRRGLGGAPRQRVPALL-------------------------------------------------------------------RVGPGFDAALQVSAAIGTNLRRFRAVFG 134
                                    15       |25        35   |     -         -         -         -         -         -         - |     115       125         
                                    15      23              39                                                                 107                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U88)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U88)

(-) Gene Ontology  (117, 139)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (MEN1_HUMAN | O00255)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0070412    R-SMAD binding    Interacting selectively and non-covalently with a receptor-regulated SMAD signaling protein.
    GO:0000403    Y-form DNA binding    Interacting selectively and non-covalently with segment of DNA shaped like a Y. This shape occurs when DNA contains a region of paired double-stranded DNA on one end and a region of unpaired DNA strands on the opposite end.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.
    GO:0000400    four-way junction DNA binding    Interacting selectively and non-covalently with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices.
    GO:0018024    histone-lysine N-methyltransferase activity    Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives.
    GO:0047485    protein N-terminus binding    Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0044212    transcription regulatory region DNA binding    Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:1904837    beta-catenin-TCF complex assembly    The aggregation, arrangement and bonding together of a set of components to form a beta-catenin-TCF complex.
    GO:0007420    brain development    The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0071333    cellular response to glucose stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0071375    cellular response to peptide hormone stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
    GO:0046697    decidualization    The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta.
    GO:0034968    histone lysine methylation    The modification of a histone by addition of one or more methyl groups to a lysine residue.
    GO:0000278    mitotic cell cycle    Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
    GO:0046329    negative regulation of JNK cascade    Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade.
    GO:0045786    negative regulation of cell cycle    Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle.
    GO:1902807    negative regulation of cell cycle G1/S phase transition    Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle G1/S phase transition.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0010812    negative regulation of cell-substrate adhesion    Any process that decreases the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules.
    GO:0045736    negative regulation of cyclin-dependent protein serine/threonine kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.
    GO:0050680    negative regulation of epithelial cell proliferation    Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation.
    GO:0045668    negative regulation of osteoblast differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of osteoblast differentiation.
    GO:0001933    negative regulation of protein phosphorylation    Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein.
    GO:0043433    negative regulation of sequence-specific DNA binding transcription factor activity    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0051974    negative regulation of telomerase activity    Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0002076    osteoblast development    The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone.
    GO:0032092    positive regulation of protein binding    Any process that activates or increases the frequency, rate or extent of protein binding.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0030511    positive regulation of transforming growth factor beta receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity.
    GO:0032925    regulation of activin receptor signaling pathway    Any process that modulates the frequency, rate or extent of the activity of any activin receptor signaling pathway.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0061469    regulation of type B pancreatic cell proliferation    Any process that modulates the frequency, rate or extent of type B pancreatic cell proliferation.
    GO:0009411    response to UV    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
    GO:0010332    response to gamma radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
    GO:0071559    response to transforming growth factor beta    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transforming growth factor beta stimulus.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0003309    type B pancreatic cell differentiation    The process in which relatively unspecialized cells acquire specialized structural and/or functional features of a type B pancreatic cell. A type B pancreatic cell is a cell located towards center of the islets of Langerhans that secretes insulin.
cellular component
    GO:0000785    chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
    GO:0032154    cleavage furrow    The cleavage furrow is a plasma membrane invagination at the cell division site. The cleavage furrow begins as a shallow groove and eventually deepens to divide the cytoplasm.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0035097    histone methyltransferase complex    A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins.
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0000784    nuclear chromosome, telomeric region    The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
    GO:0016363    nuclear matrix    The dense fibrillar network lying on the inner side of the nuclear membrane.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Chain C,D   (PSIP1_HUMAN | O75475)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0001105    RNA polymerase II transcription coactivator activity    Interacting selectively and non-covalently with an RNA polymerase II (RNAP II) regulatory transcription factor and also with the RNAP II basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between activating transcription factors and the basal RNAP II transcription machinery.
    GO:0033613    activating transcription factor binding    Interacting selectively and non-covalently with an activating transcription factor, any protein whose activity is required to initiate or upregulate transcription.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0097100    supercoiled DNA binding    Interacting selectively and non-covalently with supercoiled DNA. For example, during replication and transcription, template DNA is negatively supercoiled in the receding downstream DNA and positively supercoiled in the approaching downstream DNA.
biological process
    GO:0075713    establishment of integrated proviral latency    A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage.
    GO:0000395    mRNA 5'-splice site recognition    Recognition of the intron 5'-splice site by components of the assembling spliceosome.
    GO:0051169    nuclear transport    The directed movement of substances into, out of, or within the nucleus.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005720    nuclear heterochromatin    A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin.
    GO:0034399    nuclear periphery    The portion of the nuclear lumen proximal to the inner nuclear membrane.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0035327    transcriptionally active chromatin    The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed.

Chain M,N   (KMT2A_HUMAN | Q03164)
molecular function
    GO:0003680    AT DNA binding    Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0001046    core promoter sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.
    GO:0042800    histone methyltransferase activity (H3-K4 specific)    Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 4) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 4). This reaction is the addition of a methyl group onto lysine at position 4 of the histone H3 protein.
    GO:0018024    histone-lysine N-methyltransferase activity    Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0070577    lysine-acetylated histone binding    Interacting selectively and non-covalently with a histone in which a lysine residue has been modified by acetylation.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0044212    transcription regulatory region DNA binding    Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0045322    unmethylated CpG binding    Interacting selectively and non-covalently with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006306    DNA methylation    The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
    GO:0009952    anterior/posterior pattern specification    The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0032922    circadian regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours.
    GO:0050890    cognition    The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
    GO:0060216    definitive hemopoiesis    A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood.
    GO:0035162    embryonic hemopoiesis    The stages of blood cell formation that take place within the embryo.
    GO:0035640    exploration behavior    The specific behavior of an organism in response to a novel environment or stimulus.
    GO:0044648    histone H3-K4 dimethylation    The modification of histone H3 by addition of two methyl groups to lysine at position 4 of the histone.
    GO:0051568    histone H3-K4 methylation    The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.
    GO:0080182    histone H3-K4 trimethylation    The modification of histone H3 by addition of three methyl groups to lysine at position 4 of the histone.
    GO:0043984    histone H4-K16 acetylation    The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 16 of the histone.
    GO:0048873    homeostasis of number of cells within a tissue    Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in a tissue.
    GO:0051899    membrane depolarization    The process in which membrane potential decreases with respect to its steady-state potential, usually from negative potential to a more positive potential. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative steady-state resting potential towards the positive membrane potential that will be the peak of the action potential.
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0018026    peptidyl-lysine monomethylation    The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine.
    GO:2001040    positive regulation of cellular response to drug    Any process that activates or increases the frequency, rate or extent of cellular response to drug.
    GO:0051571    positive regulation of histone H3-K4 methylation    Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0032411    positive regulation of transporter activity    Any process that activates or increases the activity of a transporter.
    GO:0009791    post-embryonic development    The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development.
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0071440    regulation of histone H3-K14 acetylation    Any process that modulates the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone.
    GO:1901674    regulation of histone H3-K27 acetylation    Any process that modulates the frequency, rate or extent of histone H3-K27 acetylation.
    GO:0051569    regulation of histone H3-K4 methylation    Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3.
    GO:2000615    regulation of histone H3-K9 acetylation    Any process that modulates the frequency, rate or extent of histone H3-K9 acetylation.
    GO:0048172    regulation of short-term neuronal synaptic plasticity    A process that modulates short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0009416    response to light stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
    GO:0035864    response to potassium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus.
    GO:0048511    rhythmic process    Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
    GO:0048536    spleen development    The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0008542    visual learning    Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.
cellular component
    GO:0071339    MLL1 complex    A protein complex that can methylate lysine-4 of histone H3. MLL1/MLL is the catalytic methyltransferase subunit, and the complex also contains the core components ASH2L, HCFC1/HCF1 WDR5 and RBBP5.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0035097    histone methyltransferase complex    A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KMT2A_HUMAN | Q031642agh 2j2s 2jyi 2kkf 2ku7 2kyu 2lxs 2lxt 2msr 2mtn 2w5y 2w5z 3eg6 3emh 3lqh 3lqi 3lqj 3p4f 3u85 4esg 4gq6 4nw3 5f5e 5f6l
        MEN1_HUMAN | O002553u84 3u85 3u86 4gpq 4gq3 4gq4 4gq6 4i80 4og3 4og4 4og5 4og6 4og7 4og8 4x5y 4x5z 5db0 5db1 5db2 5db3 5dd9 5dda 5ddb 5ddc 5ddd 5dde 5ddf
        PSIP1_HUMAN | O754751z9e 2b4j 2m16 2msr 2mtn 2n3a 3f9k 3hpg 3hph 3zeh 4fu6

(-) Related Entries Specified in the PDB File

3u84 3u85 3u86