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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3U88
Biol. Unit 2
Info
Asym.Unit (211 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MENIN IN COMPLEX WITH MLL1 AND LEDGF
Authors
:
J. Huang, B. Wan, M. Lei
Date
:
16 Oct 11 (Deposition) - 15 Feb 12 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,M,N
Biol. Unit 1: A,C,M (1x)
Biol. Unit 2: B,D,N (1x)
Keywords
:
Menin, Men1, Mll, Jund, Ledgf, Tpr, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Huang, B. Gurung, B. Wan, S. Matkar, N. A. Veniaminova, K. Wan, J. L. Merchant, X. Hua, M. Lei
The Same Pocket In Menin Binds Both Mll And Jund But Has Opposite Effects On Transcription.
Nature V. 482 542 2012
[
close entry info
]
Hetero Components
(5, 9)
Info
All Hetero Components
1a: (4BETA,8ALPHA,9R)-6'-METHOXY-10,11... (0BRa)
1b: (4BETA,8ALPHA,9R)-6'-METHOXY-10,11... (0BRb)
2a: CHOLIC ACID (CHDa)
2b: CHOLIC ACID (CHDb)
3a: L-CANAVANINE (GGBa)
3b: L-CANAVANINE (GGBb)
3c: L-CANAVANINE (GGBc)
3d: L-CANAVANINE (GGBd)
3e: L-CANAVANINE (GGBe)
4a: GLYOXYLIC ACID (GLVa)
4b: GLYOXYLIC ACID (GLVb)
4c: GLYOXYLIC ACID (GLVc)
4d: GLYOXYLIC ACID (GLVd)
4e: GLYOXYLIC ACID (GLVe)
4f: GLYOXYLIC ACID (GLVf)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0BR
1
Ligand/Ion
(4BETA,8ALPHA,9R)-6'-METHOXY-10,11-DIHYDROCINCHONAN-9-OL
2
CHD
1
Ligand/Ion
CHOLIC ACID
3
GGB
1
Ligand/Ion
L-CANAVANINE
4
GLV
2
Ligand/Ion
GLYOXYLIC ACID
5
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:132 , TYR A:133 , PHE A:134 , LYS A:135 , CHD B:611
BINDING SITE FOR RESIDUE CHD A 611
02
AC2
SOFTWARE
CHD A:611 , SER B:132 , TYR B:133 , PHE B:134 , LYS B:135
BINDING SITE FOR RESIDUE CHD B 611
03
AC3
SOFTWARE
0BR A:612 , TRP B:126 , SER B:130 , ARG B:131 , TRP B:198 , ASN B:203
BINDING SITE FOR RESIDUE 0BR B 612
04
AC5
SOFTWARE
TRP A:126 , LEU A:129 , SER A:130 , ARG A:131 , TRP A:198 , ASN A:203 , 0BR B:612
BINDING SITE FOR RESIDUE 0BR A 612
05
AC6
SOFTWARE
TYR B:133 , PHE B:134 , ARG B:137 , LYS B:151
BINDING SITE FOR RESIDUE GGB B 615
06
BC2
SOFTWARE
LYS B:135 , ASP B:136 , SER B:154 , TRP B:198 , GLY B:200 , LYS B:201
BINDING SITE FOR RESIDUE GLV B 616
07
BC3
SOFTWARE
ARG B:330 , GLY N:23 , ARG N:24 , ARG N:25 , GLY N:26
BINDING SITE FOR RESIDUE SO4 N 1
08
BC6
SOFTWARE
ARG A:275 , LYS B:310
BINDING SITE FOR RESIDUE SO4 A 619
09
BC7
SOFTWARE
ARG B:108 , GLY B:111 , GLY B:169 , ARG B:171
BINDING SITE FOR RESIDUE SO4 B 617
10
BC9
SOFTWARE
LYS B:377 , ARG B:446
BINDING SITE FOR RESIDUE SO4 B 618
11
CC3
SOFTWARE
THR D:417 , ASN D:421
BINDING SITE FOR RESIDUE GLV D 114
12
CC4
SOFTWARE
GLY B:2 , LYS D:424 , ARG N:130
BINDING SITE FOR RESIDUE SO4 N 154
[
close Site info
]
SAPs(SNPs)/Variants
(101, 101)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
001: VAR_005425 (P12L, chain B, )
002: VAR_005426 (L22R, chain B, )
003: VAR_005427 (E26K, chain B, )
004: VAR_021317 (A30G, chain N, )
005: VAR_005428 (L39W, chain B, )
006: VAR_005429 (G42D, chain B, )
007: VAR_005430 (E45G, chain B, )
008: VAR_039587 (E45K, chain B, )
009: VAR_039588 (R98L, chain B, )
010: VAR_039589 (G110E, chain B, )
011: VAR_005434 (K135I, chain B, )
012: VAR_005432 (H139D, chain B, )
013: VAR_039590 (H139P, chain B, )
014: VAR_039591 (H139R, chain B, )
015: VAR_005433 (H139Y, chain B, )
016: VAR_005436 (F144V, chain B, )
017: VAR_065153 (I147F, chain B, )
018: VAR_065154 (L152W, chain B, )
019: VAR_039592 (D153V, chain B, )
020: VAR_039593 (S154I, chain B, )
021: VAR_039594 (S155F, chain B, )
022: VAR_008017 (G156D, chain B, )
023: VAR_005437 (A160P, chain B, )
024: VAR_039595 (A160T, chain B, )
025: VAR_039596 (V162F, chain B, )
026: VAR_005438 (A164D, chain B, )
027: VAR_039597 (C165R, chain B, )
028: VAR_039598 (L168P, chain B, )
029: VAR_005440 (R171Q, chain B, )
030: VAR_005441 (D172Y, chain B, )
031: VAR_005442 (A176P, chain B, )
032: VAR_005443 (E179D, chain B, )
033: VAR_039599 (E179K, chain B, )
034: VAR_039600 (E179Q, chain B, )
035: VAR_039601 (H181R, chain B, )
036: VAR_039602 (W183R, chain B, )
037: VAR_005444 (W183S, chain B, )
038: VAR_005445 (V184E, chain B, )
039: VAR_064937 (V215F, chain B, )
040: VAR_039603 (V215M, chain B, )
041: VAR_005446 (L223P, chain B, )
042: VAR_039604 (G225R, chain B, )
043: VAR_039605 (R229L, chain B, )
044: VAR_039606 (V240F, chain B, )
045: VAR_039607 (C241F, chain B, )
046: VAR_008018 (C241R, chain B, )
047: VAR_039608 (C241Y, chain B, )
048: VAR_005447 (A242V, chain B, )
049: VAR_039609 (S253P, chain B, )
050: VAR_039610 (S253W, chain B, )
051: VAR_005448 (E255K, chain B, )
052: VAR_039611 (L259R, chain B, )
053: VAR_039612 (Q260P, chain B, )
054: VAR_005449 (L264P, chain B, )
055: VAR_005450 (L267P, chain B, )
056: VAR_039614 (E274A, chain B, )
057: VAR_039615 (P277H, chain B, )
058: VAR_039616 (G281R, chain B, )
059: VAR_005451 (A284E, chain B, )
060: VAR_039617 (A284P, chain B, )
061: VAR_005452 (L286P, chain B, )
062: VAR_039618 (G305D, chain B, )
063: VAR_005453 (A309P, chain B, )
064: VAR_039619 (T311P, chain B, )
065: VAR_005454 (R314P, chain B, )
066: VAR_039620 (H317R, chain B, )
067: VAR_039621 (H317Y, chain B, )
068: VAR_039622 (P320L, chain B, )
069: VAR_039623 (P320R, chain B, )
070: VAR_039624 (A325P, chain B, )
071: VAR_005455 (A337D, chain B, )
072: VAR_039625 (A337P, chain B, )
073: VAR_005456 (W341R, chain B, )
074: VAR_039626 (A342P, chain B, )
075: VAR_005457 (T344R, chain B, )
076: VAR_039627 (I348N, chain B, )
077: VAR_039628 (Y353D, chain B, )
078: VAR_039629 (R355W, chain B, )
079: VAR_039630 (D357H, chain B, )
080: VAR_005458 (E359K, chain B, )
081: VAR_005460 (A368D, chain B, )
082: VAR_039631 (I372M, chain B, )
083: VAR_039632 (P373S, chain B, )
084: VAR_039633 (A385V, chain B, )
085: VAR_039634 (A411P, chain B, )
086: VAR_065155 (L413R, chain B, )
087: VAR_039635 (L414P, chain B, )
088: VAR_039636 (R415P, chain B, )
089: VAR_039637 (D418H, chain B, )
090: VAR_005461 (D418N, chain B, )
091: VAR_039638 (C421Y, chain B, )
092: VAR_039639 (W423S, chain B, )
093: VAR_039640 (S427R, chain B, )
094: VAR_039641 (W436C, chain B, )
095: VAR_005464 (W436R, chain B, )
096: VAR_039642 (L444P, chain B, )
097: VAR_005465 (F447S, chain B, )
098: VAR_039645 (P544S, chain B, )
099: VAR_039646 (T552S, chain B, )
100: VAR_005467 (S555N, chain B, )
101: VAR_039647 (S555R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_005425
P
12
L
MEN1_HUMAN
Disease (MEN1)
---
B
P
12
L
002
UniProt
VAR_005426
L
22
R
MEN1_HUMAN
Disease (MEN1)
---
B
L
22
R
003
UniProt
VAR_005427
E
26
K
MEN1_HUMAN
Disease (MEN1)
28931612
B
E
26
K
004
UniProt
VAR_021317
A
30
G
KMT2A_HUMAN
Polymorphism
9332745
N
A
30
G
005
UniProt
VAR_005428
L
39
W
MEN1_HUMAN
Disease (MEN1)
---
B
L
39
W
006
UniProt
VAR_005429
G
42
D
MEN1_HUMAN
Disease (MEN1)
---
B
G
42
D
007
UniProt
VAR_005430
E
45
G
MEN1_HUMAN
Disease (MEN1)
---
B
E
45
G
008
UniProt
VAR_039587
E
45
K
MEN1_HUMAN
Disease (MEN1)
---
B
E
45
K
009
UniProt
VAR_039588
R
98
L
MEN1_HUMAN
Disease (MEN1)
---
B
R
98
L
010
UniProt
VAR_039589
G
110
E
MEN1_HUMAN
Disease (MEN1)
---
B
G
110
E
011
UniProt
VAR_005434
K
135
I
MEN1_HUMAN
Disease (MEN1)
---
B
K
135
I
012
UniProt
VAR_005432
H
139
D
MEN1_HUMAN
Disease (MEN1)
---
B
H
139
D
013
UniProt
VAR_039590
H
139
P
MEN1_HUMAN
Disease (MEN1)
---
B
H
139
P
014
UniProt
VAR_039591
H
139
R
MEN1_HUMAN
Disease (MEN1)
---
B
H
139
R
015
UniProt
VAR_005433
H
139
Y
MEN1_HUMAN
Disease (MEN1)
---
B
H
139
Y
016
UniProt
VAR_005436
F
144
V
MEN1_HUMAN
Disease (MEN1)
---
B
F
144
V
017
UniProt
VAR_065153
I
147
F
MEN1_HUMAN
Disease (MEN1)
---
B
I
147
F
018
UniProt
VAR_065154
L
157
W
MEN1_HUMAN
Unclassified
---
B
L
152
W
019
UniProt
VAR_039592
D
158
V
MEN1_HUMAN
Disease (MEN1)
---
B
D
153
V
020
UniProt
VAR_039593
S
159
I
MEN1_HUMAN
Disease (MEN1)
---
B
S
154
I
021
UniProt
VAR_039594
S
160
F
MEN1_HUMAN
Disease (MEN1)
---
B
S
155
F
022
UniProt
VAR_008017
G
161
D
MEN1_HUMAN
Disease (MEN1)
---
B
G
156
D
023
UniProt
VAR_005437
A
165
P
MEN1_HUMAN
Disease (MEN1)
---
B
A
160
P
024
UniProt
VAR_039595
A
165
T
MEN1_HUMAN
Disease (MEN1)
---
B
A
160
T
025
UniProt
VAR_039596
V
167
F
MEN1_HUMAN
Disease (MEN1)
---
B
V
162
F
026
UniProt
VAR_005438
A
169
D
MEN1_HUMAN
Disease (MEN1)
---
B
A
164
D
027
UniProt
VAR_039597
C
170
R
MEN1_HUMAN
Disease (MEN1)
---
B
C
165
R
028
UniProt
VAR_039598
L
173
P
MEN1_HUMAN
Disease (MEN1)
---
B
L
168
P
029
UniProt
VAR_005440
R
176
Q
MEN1_HUMAN
Polymorphism
607969
B
R
171
Q
030
UniProt
VAR_005441
D
177
Y
MEN1_HUMAN
Disease (MEN1)
---
B
D
172
Y
031
UniProt
VAR_005442
A
181
P
MEN1_HUMAN
Disease (MEN1)
---
B
A
176
P
032
UniProt
VAR_005443
E
184
D
MEN1_HUMAN
Disease (MEN1)
---
B
E
179
D
033
UniProt
VAR_039599
E
184
K
MEN1_HUMAN
Disease (MEN1)
---
B
E
179
K
034
UniProt
VAR_039600
E
184
Q
MEN1_HUMAN
Disease (MEN1)
---
B
E
179
Q
035
UniProt
VAR_039601
H
186
R
MEN1_HUMAN
Disease (MEN1)
---
B
H
181
R
036
UniProt
VAR_039602
W
188
R
MEN1_HUMAN
Disease (MEN1)
---
B
W
183
R
037
UniProt
VAR_005444
W
188
S
MEN1_HUMAN
Disease (MEN1)
---
B
W
183
S
038
UniProt
VAR_005445
V
189
E
MEN1_HUMAN
Disease (FIHP)
---
B
V
184
E
039
UniProt
VAR_064937
V
220
F
MEN1_HUMAN
Unclassified
---
B
V
215
F
040
UniProt
VAR_039603
V
220
M
MEN1_HUMAN
Disease (MEN1)
---
B
V
215
M
041
UniProt
VAR_005446
L
228
P
MEN1_HUMAN
Disease (MEN1)
---
B
L
223
P
042
UniProt
VAR_039604
G
230
R
MEN1_HUMAN
Disease (MEN1)
---
B
G
225
R
043
UniProt
VAR_039605
R
234
L
MEN1_HUMAN
Disease (MEN1)
---
B
R
229
L
044
UniProt
VAR_039606
V
245
F
MEN1_HUMAN
Disease (MEN1)
---
B
V
240
F
045
UniProt
VAR_039607
C
246
F
MEN1_HUMAN
Disease (MEN1)
---
B
C
241
F
046
UniProt
VAR_008018
C
246
R
MEN1_HUMAN
Disease (MEN1)
---
B
C
241
R
047
UniProt
VAR_039608
C
246
Y
MEN1_HUMAN
Disease (MEN1)
---
B
C
241
Y
048
UniProt
VAR_005447
A
247
V
MEN1_HUMAN
Disease (MEN1)
---
B
A
242
V
049
UniProt
VAR_039609
S
258
P
MEN1_HUMAN
Disease (MEN1)
---
B
S
253
P
050
UniProt
VAR_039610
S
258
W
MEN1_HUMAN
Unclassified
---
B
S
253
W
051
UniProt
VAR_005448
E
260
K
MEN1_HUMAN
Disease (FIHP)
---
B
E
255
K
052
UniProt
VAR_039611
L
264
R
MEN1_HUMAN
Disease (MEN1)
---
B
L
259
R
053
UniProt
VAR_039612
Q
265
P
MEN1_HUMAN
Disease (FIHP)
---
B
Q
260
P
054
UniProt
VAR_005449
L
269
P
MEN1_HUMAN
Disease (MEN1)
---
B
L
264
P
055
UniProt
VAR_005450
L
272
P
MEN1_HUMAN
Disease (FIHP)
---
B
L
267
P
056
UniProt
VAR_039614
E
279
A
MEN1_HUMAN
Unclassified
---
B
E
274
A
057
UniProt
VAR_039615
P
282
H
MEN1_HUMAN
Disease (FIHP)
---
B
P
277
H
058
UniProt
VAR_039616
G
286
R
MEN1_HUMAN
Disease (MEN1)
---
B
G
281
R
059
UniProt
VAR_005451
A
289
E
MEN1_HUMAN
Disease (MEN1)
---
B
A
284
E
060
UniProt
VAR_039617
A
289
P
MEN1_HUMAN
Unclassified
---
B
A
284
P
061
UniProt
VAR_005452
L
291
P
MEN1_HUMAN
Disease (MEN1)
---
B
L
286
P
062
UniProt
VAR_039618
G
310
D
MEN1_HUMAN
Disease (FIHP)
---
B
G
305
D
063
UniProt
VAR_005453
A
314
P
MEN1_HUMAN
Disease (MEN1)
---
B
A
309
P
064
UniProt
VAR_039619
T
316
P
MEN1_HUMAN
Disease (MEN1)
---
B
T
311
P
065
UniProt
VAR_005454
R
319
P
MEN1_HUMAN
Disease (MEN1)
---
B
R
314
P
066
UniProt
VAR_039620
H
322
R
MEN1_HUMAN
Disease (MEN1)
---
B
H
317
R
067
UniProt
VAR_039621
H
322
Y
MEN1_HUMAN
Disease (MEN1)
---
B
H
317
Y
068
UniProt
VAR_039622
P
325
L
MEN1_HUMAN
Disease (MEN1)
---
B
P
320
L
069
UniProt
VAR_039623
P
325
R
MEN1_HUMAN
Disease (MEN1)
---
B
P
320
R
070
UniProt
VAR_039624
A
330
P
MEN1_HUMAN
Disease (MEN1)
---
B
A
325
P
071
UniProt
VAR_005455
A
342
D
MEN1_HUMAN
Disease (MEN1)
2071312
B
A
337
D
072
UniProt
VAR_039625
A
342
P
MEN1_HUMAN
Disease (MEN1)
---
B
A
337
P
073
UniProt
VAR_005456
W
346
R
MEN1_HUMAN
Disease (MEN1)
---
B
W
341
R
074
UniProt
VAR_039626
A
347
P
MEN1_HUMAN
Disease (MEN1)
---
B
A
342
P
075
UniProt
VAR_005457
T
349
R
MEN1_HUMAN
Disease (MEN1)
---
B
T
344
R
076
UniProt
VAR_039627
I
353
N
MEN1_HUMAN
Disease (MEN1)
---
B
I
348
N
077
UniProt
VAR_039628
Y
358
D
MEN1_HUMAN
Disease (MEN1)
---
B
Y
353
D
078
UniProt
VAR_039629
R
360
W
MEN1_HUMAN
Disease (MEN1)
---
B
R
355
W
079
UniProt
VAR_039630
D
362
H
MEN1_HUMAN
Disease (MEN1)
---
B
D
357
H
080
UniProt
VAR_005458
E
364
K
MEN1_HUMAN
Disease (MEN1)
---
B
E
359
K
081
UniProt
VAR_005460
A
373
D
MEN1_HUMAN
Disease (MEN1)
---
B
A
368
D
082
UniProt
VAR_039631
I
377
M
MEN1_HUMAN
Disease (MEN1)
---
B
I
372
M
083
UniProt
VAR_039632
P
378
S
MEN1_HUMAN
Disease (MEN1)
---
B
P
373
S
084
UniProt
VAR_039633
A
390
V
MEN1_HUMAN
Disease (MEN1)
---
B
A
385
V
085
UniProt
VAR_039634
A
416
P
MEN1_HUMAN
Disease (MEN1)
---
B
A
411
P
086
UniProt
VAR_065155
L
418
R
MEN1_HUMAN
Disease (MEN1)
---
B
L
413
R
087
UniProt
VAR_039635
L
419
P
MEN1_HUMAN
Disease (MEN1)
---
B
L
414
P
088
UniProt
VAR_039636
R
420
P
MEN1_HUMAN
Disease (MEN1)
---
B
R
415
P
089
UniProt
VAR_039637
D
423
H
MEN1_HUMAN
Disease (MEN1)
---
B
D
418
H
090
UniProt
VAR_005461
D
423
N
MEN1_HUMAN
Disease (MEN1)
---
B
D
418
N
091
UniProt
VAR_039638
C
426
Y
MEN1_HUMAN
Disease (MEN1)
---
B
C
421
Y
092
UniProt
VAR_039639
W
428
S
MEN1_HUMAN
Disease (MEN1)
---
B
W
423
S
093
UniProt
VAR_039640
S
432
R
MEN1_HUMAN
Disease (MEN1)
---
B
S
427
R
094
UniProt
VAR_039641
W
441
C
MEN1_HUMAN
Disease (MEN1)
---
B
W
436
C
095
UniProt
VAR_005464
W
441
R
MEN1_HUMAN
Disease (MEN1)
---
B
W
436
R
096
UniProt
VAR_039642
L
449
P
MEN1_HUMAN
Disease (MEN1)
---
B
L
444
P
097
UniProt
VAR_005465
F
452
S
MEN1_HUMAN
Disease (MEN1)
---
B
F
447
S
098
UniProt
VAR_039645
P
549
S
MEN1_HUMAN
Disease (MEN1)
---
B
P
544
S
099
UniProt
VAR_039646
T
557
S
MEN1_HUMAN
Unclassified
---
B
T
552
S
100
UniProt
VAR_005467
S
560
N
MEN1_HUMAN
Disease (MEN1)
---
B
S
555
N
101
UniProt
VAR_039647
S
560
R
MEN1_HUMAN
Disease (MEN1)
---
B
S
555
R
SNP/SAP Summary Statistics
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SCOP Domains
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1a: SCOP_d3u88c_ (C:)
1b: SCOP_d3u88d_ (D:)
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All alpha proteins
(14657)
Fold
:
N-cbl like
(37)
Superfamily
:
HIV integrase-binding domain
(4)
Family
:
HIV integrase-binding domain
(4)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3u88c_
C:
1b
d3u88d_
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Asymmetric Unit 1
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