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(-) Description

Title :  HUMAN MENIN IN COMPLEX WITH MLL PEPTIDE
 
Authors :  A. Shi, M. J. Murai, S. He, G. L. Lund, T. Hartley, T. Purohit, G. Reddy, M. J. Grembecka, T. Cierpicki
Date :  22 Aug 12  (Deposition) - 19 Sep 12  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tumor Suppressor, Nucleus, Transcription-Transcription Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Shi, M. J. Murai, S. He, G. Lund, T. Hartley, T. Purohit, G. Reddy, M. Chruszcz, J. Grembecka, T. Cierpicki
Structural Insights Into Inhibition Of The Bivalent Menin-Mll Interaction By Small Molecules In Leukemia.
Blood V. 120 4461 2012
PubMed-ID: 22936661  |  Reference-DOI: 10.1182/BLOOD-2012-05-429274

(-) Compounds

Molecule 1 - MENIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MEN1, SCG2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - HISTONE-LYSINE N-METHYLTRANSFERASE MLL
    Chains: B
    EC Number: 2.1.1.43
    Engineered: YES
    Fragment: UNP RESIDUES 6-15
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALL-1, CXXC-TYPE ZINC FINGER PROTEIN 7, LYSINE N- METHYLTRANSFERASE 2A, KMT2A, TRITHORAX-LIKE PROTEIN, ZINC FINGER PROTEIN HRX, MLL CLEAVAGE PRODUCT N320, N-TERMINAL CLEAVAGE PRODUCT OF 320 KDA, P320, MLL CLEAVAGE PRODUCT C180, C-TERMINAL CLEAVAGE PRODUCT OF 180 KDA, P180
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:133 , PHE A:134 , ARG A:137 , LYS A:151 , ARG A:332BINDING SITE FOR RESIDUE SO4 A 601
2AC2SOFTWAREARG A:332 , VAL A:334 , ARG A:335 , ALA A:403 , HOH A:1043BINDING SITE FOR RESIDUE SO4 A 602
3AC3SOFTWAREARG A:108 , GLY A:111 , GLY A:169 , ARG A:171 , HOH A:1104BINDING SITE FOR RESIDUE SO4 A 603
4AC4SOFTWARELEU A:75 , THR A:76 , TYR A:361 , LYS A:362 , PHE A:365 , HOH A:729 , HOH A:953 , HOH A:1161BINDING SITE FOR RESIDUE 1PE A 604
5AC5SOFTWARETRP A:126 , SER A:130 , ARG A:131 , LYS A:135BINDING SITE FOR RESIDUE 1PE A 605
6AC6SOFTWAREASP A:136 , ARG A:137 , ALA A:138 , ASP A:153 , SER A:154 , SER A:155 , GLU A:179 , ASP A:180 , HIS A:181 , PHE A:238 , ASN A:244 , MET A:278 , GLU A:290 , TYR A:319 , TYR A:323 , GLU A:359 , GLU A:363 , HOH A:724 , HOH A:820 , HOH A:1044 , SER B:4 , ALA B:5 , HOH B:101 , HOH B:102 , HOH B:104 , HOH B:105 , HOH B:107 , HOH B:109BINDING SITE FOR CHAIN B OF HISTONE-LYSINE N- METHYLTRANSFERASE MLL

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GQ6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:11 -Pro A:12

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GQ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GQ6)

(-) Exons   (0, 0)

(no "Exon" information available for 4GQ6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhh............hhhhhhhhh..hhhhhhhhhhhhhhhh.....eeee....eeeeehhhhheee................hhhhhhh.hhhhhhhh.ee.hhhhhhhhhhhh...eee..eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhh..ee....ee...hhhhhhhhhhhh....hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gq6 A   2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFITGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGSQGSALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSVPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMK 588
                                    11        21        31        41        51 ||     81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381    || 403       413       423       433       443       453      |551       561       571       581       
                                                                              53|                                                                                                                                                                                                                                                                                                                     386|                                                          460|                                       
                                                                               74                                                                                                                                                                                                                                                                                                                      399                                                           549                                       


Chain B from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ............ Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4gq6 B   4 SARWRFPARPGT  15
                                    13
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GQ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GQ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GQ6)

(-) Gene Ontology  (104, 117)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:11 - Pro A:12   [ RasMol ]  
 

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  4gq6
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  KMT2A_HUMAN | Q03164
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  MEN1_HUMAN | O00255
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  2.1.1.43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KMT2A_HUMAN | Q03164: 2agh 2j2s 2jyi 2kkf 2ku7 2kyu 2lxs 2lxt 2msr 2mtn 2w5y 2w5z 3eg6 3emh 3lqh 3lqi 3lqj 3p4f 3u85 3u88 4esg 4nw3 5f5e 5f6l
        MEN1_HUMAN | O00255: 3u84 3u85 3u86 3u88 4gpq 4gq3 4gq4 4i80 4og3 4og4 4og5 4og6 4og7 4og8 4x5y 4x5z 5db0 5db1 5db2 5db3 5dd9 5dda 5ddb 5ddc 5ddd 5dde 5ddf

(-) Related Entries Specified in the PDB File

4gpq 4gq3 4gq4