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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN MENIN IN COMPLEX WITH JUND
 
Authors :  J. Huang, B. Wan, M. Lei
Date :  15 Oct 11  (Deposition) - 15 Feb 12  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.84
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Menin, Men1, Mll, Jund, Ledgf, Tpr, Transcription, Epigenetics, Cancer (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Huang, B. Gurung, B. Wan, S. Matkar, N. A. Veniaminova, K. Wan, J. L. Merchant, X. Hua, M. Lei
The Same Pocket In Menin Binds Both Mll And Jund But Has Opposite Effects On Transcription.
Nature V. 482 542 2012
PubMed-ID: 22327296  |  Reference-DOI: 10.1038/NATURE10806

(-) Compounds

Molecule 1 - MENIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneMEN1, SCG2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - TRANSCRIPTION FACTOR JUN-D
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneJUND
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3U86)

(-) Sites  (0, 0)

(no "Site" information available for 3U86)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U86)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:11 -Pro A:12
2Gly A:73 -Gly A:74

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (100, 100)

Asymmetric/Biological Unit (100, 100)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_005425P12LMEN1_HUMANDisease (MEN1)794728614AP12L
002UniProtVAR_005426L22RMEN1_HUMANDisease (MEN1)104894256AL22R
003UniProtVAR_005427E26KMEN1_HUMANDisease (MEN1)28931612AE26K
004UniProtVAR_005428L39WMEN1_HUMANDisease (MEN1)  ---AL39W
005UniProtVAR_005429G42DMEN1_HUMANDisease (MEN1)  ---AG42D
006UniProtVAR_005430E45GMEN1_HUMANDisease (MEN1)  ---AE45G
007UniProtVAR_039587E45KMEN1_HUMANDisease (MEN1)  ---AE45K
008UniProtVAR_039588R98LMEN1_HUMANDisease (MEN1)  ---AR98L
009UniProtVAR_039589G110EMEN1_HUMANDisease (MEN1)  ---AG110E
010UniProtVAR_005434K135IMEN1_HUMANDisease (MEN1)  ---AK135I
011UniProtVAR_005432H139DMEN1_HUMANDisease (MEN1)104894263AH139D
012UniProtVAR_039590H139PMEN1_HUMANDisease (MEN1)  ---AH139P
013UniProtVAR_039591H139RMEN1_HUMANDisease (MEN1)  ---AH139R
014UniProtVAR_005433H139YMEN1_HUMANDisease (MEN1)  ---AH139Y
015UniProtVAR_005436F144VMEN1_HUMANDisease (MEN1)  ---AF144V
016UniProtVAR_065153I147FMEN1_HUMANDisease (MEN1)  ---AI147F
017UniProtVAR_065154L157WMEN1_HUMANUnclassified  ---AL152W
018UniProtVAR_039592D158VMEN1_HUMANDisease (MEN1)  ---AD153V
019UniProtVAR_039593S159IMEN1_HUMANDisease (MEN1)  ---AS154I
020UniProtVAR_039594S160FMEN1_HUMANDisease (MEN1)  ---AS155F
021UniProtVAR_008017G161DMEN1_HUMANUnclassified  ---AG156D
022UniProtVAR_005437A165PMEN1_HUMANDisease (MEN1)  ---AA160P
023UniProtVAR_039595A165TMEN1_HUMANDisease (MEN1)  ---AA160T
024UniProtVAR_039596V167FMEN1_HUMANDisease (MEN1)  ---AV162F
025UniProtVAR_005438A169DMEN1_HUMANDisease (MEN1)  ---AA164D
026UniProtVAR_039597C170RMEN1_HUMANDisease (MEN1)  ---AC165R
027UniProtVAR_039598L173PMEN1_HUMANDisease (MEN1)386134256AL168P
028UniProtVAR_005440R176QMEN1_HUMANPolymorphism607969AR171Q
029UniProtVAR_005441D177YMEN1_HUMANDisease (MEN1)  ---AD172Y
030UniProtVAR_005442A181PMEN1_HUMANDisease (MEN1)376872829AA176P
031UniProtVAR_005443E184DMEN1_HUMANDisease (MEN1)  ---AE179D
032UniProtVAR_039599E184KMEN1_HUMANDisease (MEN1)  ---AE179K
033UniProtVAR_039600E184QMEN1_HUMANDisease (MEN1)  ---AE179Q
034UniProtVAR_039601H186RMEN1_HUMANDisease (MEN1)  ---AH181R
035UniProtVAR_039602W188RMEN1_HUMANUnclassified794728649AW183R
036UniProtVAR_005444W188SMEN1_HUMANDisease (MEN1)  ---AW183S
037UniProtVAR_005445V189EMEN1_HUMANDisease104894262AV184E
038UniProtVAR_064937V220FMEN1_HUMANUnclassified  ---AV215F
039UniProtVAR_039603V220MMEN1_HUMANDisease (MEN1)794728621AV215M
040UniProtVAR_005446L228PMEN1_HUMANDisease (MEN1)  ---AL223P
041UniProtVAR_039604G230RMEN1_HUMANDisease (MEN1)  ---AG225R
042UniProtVAR_039605R234LMEN1_HUMANDisease (MEN1)  ---AR229L
043UniProtVAR_039606V245FMEN1_HUMANDisease (MEN1)  ---AV240F
044UniProtVAR_039607C246FMEN1_HUMANDisease (MEN1)  ---AC241F
045UniProtVAR_008018C246RMEN1_HUMANDisease (MEN1)  ---AC241R
046UniProtVAR_039608C246YMEN1_HUMANDisease (MEN1)794728624AC241Y
047UniProtVAR_005447A247VMEN1_HUMANDisease (MEN1)  ---AA242V
048UniProtVAR_039609S258PMEN1_HUMANDisease (MEN1)  ---AS253P
049UniProtVAR_039610S258WMEN1_HUMANUnclassified  ---AS253W
050UniProtVAR_005448E260KMEN1_HUMANDisease104894268AE255K
051UniProtVAR_039611L264RMEN1_HUMANDisease (MEN1)  ---AL259R
052UniProtVAR_039612Q265PMEN1_HUMANDisease  ---AQ260P
053UniProtVAR_005449L269PMEN1_HUMANDisease (MEN1)  ---AL264P
054UniProtVAR_005450L272PMEN1_HUMANDisease  ---AL267P
055UniProtVAR_039614E279AMEN1_HUMANUnclassified  ---AE274A
056UniProtVAR_039615P282HMEN1_HUMANDisease  ---AP277H
057UniProtVAR_039616G286RMEN1_HUMANDisease (MEN1)  ---AG281R
058UniProtVAR_005451A289EMEN1_HUMANDisease (MEN1)  ---AA284E
059UniProtVAR_039617A289PMEN1_HUMANUnclassified  ---AA284P
060UniProtVAR_005452L291PMEN1_HUMANDisease (MEN1)  ---AL286P
061UniProtVAR_039618G310DMEN1_HUMANDisease  ---AG305D
062UniProtVAR_005453A314PMEN1_HUMANDisease (MEN1)  ---AA309P
063UniProtVAR_039619T316PMEN1_HUMANDisease (MEN1)  ---AT311P
064UniProtVAR_005454R319PMEN1_HUMANDisease (MEN1)  ---AR314P
065UniProtVAR_039620H322RMEN1_HUMANDisease (MEN1)  ---AH317R
066UniProtVAR_039621H322YMEN1_HUMANDisease (MEN1)  ---AH317Y
067UniProtVAR_039622P325LMEN1_HUMANDisease (MEN1)  ---AP320L
068UniProtVAR_039623P325RMEN1_HUMANDisease (MEN1)  ---AP320R
069UniProtVAR_039624A330PMEN1_HUMANDisease (MEN1)  ---AA325P
070UniProtVAR_005455A342DMEN1_HUMANDisease (MEN1)2071312AA337D
071UniProtVAR_039625A342PMEN1_HUMANDisease (MEN1)  ---AA337P
072UniProtVAR_005456W346RMEN1_HUMANDisease (MEN1)  ---AW341R
073UniProtVAR_039626A347PMEN1_HUMANDisease (MEN1)  ---AA342P
074UniProtVAR_005457T349RMEN1_HUMANDisease (MEN1)  ---AT344R
075UniProtVAR_039627I353NMEN1_HUMANDisease (MEN1)  ---AI348N
076UniProtVAR_039628Y358DMEN1_HUMANDisease (MEN1)  ---AY353D
077UniProtVAR_039629R360WMEN1_HUMANDisease (MEN1)  ---AR355W
078UniProtVAR_039630D362HMEN1_HUMANDisease (MEN1)  ---AD357H
079UniProtVAR_005458E364KMEN1_HUMANDisease (MEN1)387906552AE359K
080UniProtVAR_005460A373DMEN1_HUMANDisease (MEN1)  ---AA368D
081UniProtVAR_039631I377MMEN1_HUMANDisease (MEN1)  ---AI372M
082UniProtVAR_039632P378SMEN1_HUMANDisease (MEN1)  ---AP373S
083UniProtVAR_039633A390VMEN1_HUMANDisease (MEN1)  ---AA385V
084UniProtVAR_039634A416PMEN1_HUMANDisease (MEN1)  ---AA411P
085UniProtVAR_065155L418RMEN1_HUMANDisease (MEN1)  ---AL413R
086UniProtVAR_039635L419PMEN1_HUMANDisease (MEN1)  ---AL414P
087UniProtVAR_039636R420PMEN1_HUMANDisease (MEN1)  ---AR415P
088UniProtVAR_039637D423HMEN1_HUMANDisease (MEN1)104894264AD418H
089UniProtVAR_005461D423NMEN1_HUMANDisease (MEN1)104894264AD418N
090UniProtVAR_039638C426YMEN1_HUMANDisease (MEN1)386134249AC421Y
091UniProtVAR_039639W428SMEN1_HUMANDisease (MEN1)  ---AW423S
092UniProtVAR_039640S432RMEN1_HUMANDisease (MEN1)  ---AS427R
093UniProtVAR_039641W441CMEN1_HUMANDisease (MEN1)398124435AW436C
094UniProtVAR_005464W441RMEN1_HUMANDisease (MEN1)104894259AW436R
095UniProtVAR_039642L449PMEN1_HUMANDisease (MEN1)  ---AL444P
096UniProtVAR_005465F452SMEN1_HUMANDisease (MEN1)  ---AF447S
097UniProtVAR_039643R532CMEN1_HUMANDisease (MEN1)  ---AR527C
098UniProtVAR_039646T557SMEN1_HUMANPolymorphism121913035AT552S
099UniProtVAR_005467S560NMEN1_HUMANDisease (MEN1)863224527AS555N
100UniProtVAR_039647S560RMEN1_HUMANDisease (MEN1)  ---AS555R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U86)

(-) Exons   (0, 0)

(no "Exon" information available for 3U86)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:484
 aligned with MEN1_HUMAN | O00255 from UniProtKB/Swiss-Prot  Length:615

    Alignment length:585
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581     
           MEN1_HUMAN     2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTAQVPAPTASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTA 586
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh............eeeee.......eeeee..hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.............hhhhhhh-----h...hhhhhhhhhhhhhhhh.....eeee....eeeee.....eee................hhhhhhh....hhhhh.ee.hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....----------------....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhh..ee..------------------------------------------------------------........--------------------..ee...hhhhhhhhhhhh....hhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ----------L---------R---K------------W--D--G----------------------------------------------------L-----------E------------------------I---D----V--F---------WVIFD---P-F-DR--P--QY---P--D-R-RE------------------------------F-------P-R---L----------FFV----------P-K---RP---P--P------A--H---R--E-P------------------D---P-P--P--R--L----P-----------D---RP-R---N----D-W-H-K--------D---MS-----------V-------------------------P-RPP--H--Y-S---R--------C-------P--S-------------------------------------------------------------------------------C------------------------S--N-------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------K---------------------------------------------------------------------------------------------P-------------------------T------------------K---S-------------------------------M-------------------------R-----------W------------------------------P--------------------------------Y--R----------------P--------------------------------------------------------------------------------N-----------------R----------------------------------------------------------------------------------------------------------------------R-------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------Q-------------------------------------------------------------Y---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) -----------------------------------------------------------------------------------------------------------------------------------------Y--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u86 A   2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFIT-----GTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEA----------------SALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVS------------------------------------------------------------GTVAGTAR--------------------GPVLTFQSEKMKGMKELLVATKINSSAIKLQLTA 581
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141      |  -  |    156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        |-         -     | 406       416       426       436       446       456  |      -         -         -         -         -         -   |   526|        -         - |     556       566       576     
                                                                                                                                                                            148   149                                                                                                                                                                                                                                         385              402                                                      459                                                          520    527                  548                                 

Chain B from PDB  Type:PROTEIN  Length:12
 aligned with JUND_HUMAN | P17535 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:18
                                    39        
           JUND_HUMAN    30 RLFPGAPPTAAAGSMMKK  47
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ..........------.. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                 3u86 B  30 RLFPGAPPTA------KK  47
                                    39      | 
                                    39     46 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3U86)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U86)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U86)

(-) Gene Ontology  (87, 100)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MEN1_HUMAN | O00255)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0070412    R-SMAD binding    Interacting selectively and non-covalently with a receptor-regulated SMAD signaling protein.
    GO:0000403    Y-form DNA binding    Interacting selectively and non-covalently with segment of DNA shaped like a Y. This shape occurs when DNA contains a region of paired double-stranded DNA on one end and a region of unpaired DNA strands on the opposite end.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.
    GO:0000400    four-way junction DNA binding    Interacting selectively and non-covalently with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices.
    GO:0018024    histone-lysine N-methyltransferase activity    Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives.
    GO:0047485    protein N-terminus binding    Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0044212    transcription regulatory region DNA binding    Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:1904837    beta-catenin-TCF complex assembly    The aggregation, arrangement and bonding together of a set of components to form a beta-catenin-TCF complex.
    GO:0007420    brain development    The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0071333    cellular response to glucose stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0071375    cellular response to peptide hormone stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
    GO:0046697    decidualization    The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta.
    GO:0034968    histone lysine methylation    The modification of a histone by addition of one or more methyl groups to a lysine residue.
    GO:0000278    mitotic cell cycle    Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
    GO:0046329    negative regulation of JNK cascade    Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade.
    GO:0045786    negative regulation of cell cycle    Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle.
    GO:1902807    negative regulation of cell cycle G1/S phase transition    Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle G1/S phase transition.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0010812    negative regulation of cell-substrate adhesion    Any process that decreases the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules.
    GO:0045736    negative regulation of cyclin-dependent protein serine/threonine kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.
    GO:0050680    negative regulation of epithelial cell proliferation    Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation.
    GO:0045668    negative regulation of osteoblast differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of osteoblast differentiation.
    GO:0001933    negative regulation of protein phosphorylation    Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein.
    GO:0043433    negative regulation of sequence-specific DNA binding transcription factor activity    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0051974    negative regulation of telomerase activity    Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0002076    osteoblast development    The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone.
    GO:0032092    positive regulation of protein binding    Any process that activates or increases the frequency, rate or extent of protein binding.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0030511    positive regulation of transforming growth factor beta receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of TGF-beta receptor signaling pathway activity.
    GO:0032925    regulation of activin receptor signaling pathway    Any process that modulates the frequency, rate or extent of the activity of any activin receptor signaling pathway.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0061469    regulation of type B pancreatic cell proliferation    Any process that modulates the frequency, rate or extent of type B pancreatic cell proliferation.
    GO:0009411    response to UV    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
    GO:0010332    response to gamma radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
    GO:0071559    response to transforming growth factor beta    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transforming growth factor beta stimulus.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0003309    type B pancreatic cell differentiation    The process in which relatively unspecialized cells acquire specialized structural and/or functional features of a type B pancreatic cell. A type B pancreatic cell is a cell located towards center of the islets of Langerhans that secretes insulin.
cellular component
    GO:0000785    chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
    GO:0032154    cleavage furrow    The cleavage furrow is a plasma membrane invagination at the cell division site. The cleavage furrow begins as a shallow groove and eventually deepens to divide the cytoplasm.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0035097    histone methyltransferase complex    A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins.
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0000784    nuclear chromosome, telomeric region    The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
    GO:0016363    nuclear matrix    The dense fibrillar network lying on the inner side of the nuclear membrane.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Chain B   (JUND_HUMAN | P17535)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0000981    RNA polymerase II transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0016922    ligand-dependent nuclear receptor binding    Interacting selectively and non-covalently, in a ligand dependent manner, with a nuclear receptor protein.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003713    transcription coactivator activity    Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
    GO:0044212    transcription regulatory region DNA binding    Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0071277    cellular response to calcium ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
    GO:0032870    cellular response to hormone stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0002076    osteoblast development    The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone.
    GO:0045597    positive regulation of cell differentiation    Any process that activates or increases the frequency, rate or extent of cell differentiation.
    GO:0045669    positive regulation of osteoblast differentiation    Any process that activates or increases the frequency, rate or extent of osteoblast differentiation.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0051726    regulation of cell cycle    Any process that modulates the rate or extent of progression through the cell cycle.
    GO:0010941    regulation of cell death    Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0006357    regulation of transcription from RNA polymerase II promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0051591    response to cAMP    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0009416    response to light stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0009612    response to mechanical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0043434    response to peptide hormone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
    GO:0009314    response to radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0000785    chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0032993    protein-DNA complex    A macromolecular complex containing both protein and DNA molecules.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MEN1_HUMAN | O002553u84 3u85 3u88 4gpq 4gq3 4gq4 4gq6 4i80 4og3 4og4 4og5 4og6 4og7 4og8 4x5y 4x5z 5db0 5db1 5db2 5db3 5dd9 5dda 5ddb 5ddc 5ddd 5dde 5ddf

(-) Related Entries Specified in the PDB File

3u84 3u85 3u88