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(-) Description

Title :  SOLUTION STRUCTURE OF LEDGF/P75 IBD IN COMPLEX WITH POGZ PEPTIDE (1389-1404)
 
Authors :  P. Tesina, K. Cermakova, M. Horejsi, K. Prochazkova, M. Fabry, S. Sharm F. Christ, J. Demeulemeester, Z. Debyser, J. De Rijck, V. Veverka, P.
Date :  26 May 15  (Deposition) - 19 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (29x)
NMR Structure *:  A,B  (1x)
Keywords :  Ledgf/P75, Pogz, H3K36Me3, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Tesina, K. Cermakova, M. Horejsi, K. Prochazkova, M. Fabry, S. Sharma, F. Christ, J. Demeulemeester, Z. Debyser, J. D. Rijck, V. Veverka, P. Rezacova
Multiple Cellular Proteins Interact With Ledgf/P75 Through Conserved Unstructured Consensus Motif.
Nat Commun V. 6 7968 2015
PubMed-ID: 26245978  |  Reference-DOI: 10.1038/NCOMMS8968

(-) Compounds

Molecule 1 - POGO TRANSPOSABLE ELEMENT WITH ZNF DOMAIN
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 1389-1404
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SUPPRESSOR OF HAIRY WING HOMOLOG 5, ZINC FINGER PROTEIN 280E, ZINC FINGER PROTEIN 635
    Synthetic: YES
 
Molecule 2 - PC4 AND SFRS1-INTERACTING PROTEIN
    Chains: B
    Engineered: YES
    Expression System Plasmid: PET
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 348-426
    Gene: PSIP1, DFS70, LEDGF, PSIP2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CLL-ASSOCIATED ANTIGEN KW-7, DENSE FINE SPECKLES 70 KDA PROTEIN, DFS 70, LENS EPITHELIUM-DERIVED GROWTH FACTOR, TRANSCRIPTIONAL COACTIVATOR P75/P52

 Structural Features

(-) Chains, Units

  12
NMR Structure (29x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N3A)

(-) Sites  (0, 0)

(no "Site" information available for 2N3A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N3A)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2N3A)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:16
                                                 
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ................ Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                2n3a A 1389 EGESETESFYGFEEAD 1404
                                  1398      


Chain B from PDB  Type:PROTEIN  Length:79
                                                                                                                
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                2n3a B  348 MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNM  426
                                   357       367       377       387       397       407       417
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N3A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N3A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N3A)

(-) Gene Ontology  (31, 35)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POGZ_HUMAN | Q7Z3K3: 2e72
        PSIP1_HUMAN | O75475: 1z9e 2b4j 2m16 2msr 2mtn 3f9k 3hpg 3hph 3u88 3zeh 4fu6

(-) Related Entries Specified in the PDB File

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