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3OXU
Biol. Unit 2
Info
Asym.Unit (229 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (77 KB)
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(1)
Title
:
COMPLEMENT COMPONENTS FACTOR H CCP19-20 AND C3D IN COMPLEX
Authors
:
H. P. Morgan, C. Q. Schmidt, M. Guariento, D. Gillespie, A. P. Herbert, H B. S. Blaum, D. Svergun, C. M. Johansson, D. Uhrin, P. N. Barlow, J. P. Ha
Date
:
22 Sep 10 (Deposition) - 16 Feb 11 (Release) - 20 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: B,F (1x)
Biol. Unit 2: A,E (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
C3D-Alpha-Alpha Barrel, Complement Component, Factor H, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. P. Morgan, C. Q. Schmidt, M. Guariento, B. S. Blaum, D. Gillespie, A. P. Herbert, D. Kavanagh, H. D. Mertens, D. I. Svergun, C. M. Johansson, D. Uhrin, P. N. Barlow, J. P. Hannan
Structural Basis For Engagement By Complement Factor H Of C3B On A Self Surface.
Nat. Struct. Mol. Biol. V. 18 463 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:84 , GLU A:127 , PRO A:130 , VAL A:131 , GLN A:134 , HOH A:580
BINDING SITE FOR RESIDUE GOL A 311
2
AC4
SOFTWARE
GLY A:207 , ARG A:208 , LYS A:210 , TYR C:273
BINDING SITE FOR RESIDUE GOL C 311
3
AC6
SOFTWARE
TYR A:273 , GLU B:37 , LYS B:291 , HOH B:831 , LYS D:1202 , TYR D:1205
BINDING SITE FOR RESIDUE GOL D 6
4
AC8
SOFTWARE
TYR B:60 , THR B:61 , LEU B:64 , HOH B:331 , HOH E:591 , TRP E:1219
BINDING SITE FOR RESIDUE GOL E 2
[
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SAPs(SNPs)/Variants
(24, 24)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_063655 (R49L, chain A, )
02: VAR_063216 (A101V, chain A, )
03: VAR_063217 (D122N, chain A, )
04: VAR_063218 (C165W, chain A, )
05: VAR_063219 (Q168K, chain A, )
06: VAR_022761 (D223N, chain A, )
07: VAR_019207 (G231D, chain A, )
08: VAR_025874 (D1119G, chain E, )
09: VAR_025875 (V1134G, chain E, )
10: VAR_025876 (Y1142D, chain E, )
11: VAR_043896 (Q1143E, chain E, )
12: VAR_025877 (W1157R, chain E, )
13: VAR_025878 (C1163W, chain E, )
14: VAR_063650 (I1169L, chain E, )
15: VAR_019407 (L1189R, chain E, )
16: VAR_019408 (S1191L, chain E, )
17: VAR_025882 (G1194D, chain E, )
18: VAR_025883 (V1197A, chain E, )
19: VAR_025884 (E1198A, chain E, )
20: VAR_031986 (F1199S, chain E, )
21: VAR_025885 (R1210C, chain E, )
22: VAR_025886 (R1215G, chain E, )
23: VAR_025887 (R1215Q, chain E, )
24: VAR_025888 (P1226S, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_063655
R
1042
L
CO3_HUMAN
Disease (AHUS5)
---
A
R
49
L
02
UniProt
VAR_063216
A
1094
V
CO3_HUMAN
Disease (AHUS5)
---
A
A
101
V
03
UniProt
VAR_063217
D
1115
N
CO3_HUMAN
Disease (AHUS5)
---
A
D
122
N
04
UniProt
VAR_063218
C
1158
W
CO3_HUMAN
Disease (AHUS5)
---
A
C
165
W
05
UniProt
VAR_063219
Q
1161
K
CO3_HUMAN
Disease (AHUS5)
---
A
Q
168
K
06
UniProt
VAR_022761
D
1216
N
CO3_HUMAN
Unclassified
---
A
D
223
N
07
UniProt
VAR_019207
G
1224
D
CO3_HUMAN
Polymorphism
11569534
A
G
231
D
08
UniProt
VAR_025874
D
1119
G
CFAH_HUMAN
Disease (CFHD)
---
E
D
1119
G
09
UniProt
VAR_025875
V
1134
G
CFAH_HUMAN
Disease (AHUS1)
---
E
V
1134
G
10
UniProt
VAR_025876
Y
1142
D
CFAH_HUMAN
Disease (AHUS1)
---
E
Y
1142
D
11
UniProt
VAR_043896
Q
1143
E
CFAH_HUMAN
Polymorphism
34247141
E
Q
1143
E
12
UniProt
VAR_025877
W
1157
R
CFAH_HUMAN
Disease (AHUS1)
---
E
W
1157
R
13
UniProt
VAR_025878
C
1163
W
CFAH_HUMAN
Disease (AHUS1)
---
E
C
1163
W
14
UniProt
VAR_063650
I
1169
L
CFAH_HUMAN
Disease (AHUS1)
---
E
I
1169
L
19
UniProt
VAR_019407
L
1189
R
CFAH_HUMAN
Disease (AHUS1)
---
E
L
1189
R
20
UniProt
VAR_019408
S
1191
L
CFAH_HUMAN
Disease (AHUS1)
460897
E
S
1191
L
21
UniProt
VAR_025882
G
1194
D
CFAH_HUMAN
Disease (AHUS1)
---
E
G
1194
D
22
UniProt
VAR_025883
V
1197
A
CFAH_HUMAN
Disease (AHUS1)
460184
E
V
1197
A
23
UniProt
VAR_025884
E
1198
A
CFAH_HUMAN
Disease (AHUS1)
---
E
E
1198
A
24
UniProt
VAR_031986
F
1199
S
CFAH_HUMAN
Disease (AHUS1)
---
E
F
1199
S
25
UniProt
VAR_025885
R
1210
C
CFAH_HUMAN
Disease (ARMD4)
---
E
R
1210
C
26
UniProt
VAR_025886
R
1215
G
CFAH_HUMAN
Disease (AHUS1)
---
E
R
1215
G
27
UniProt
VAR_025887
R
1215
Q
CFAH_HUMAN
Disease (CFHD)
---
E
R
1215
Q
28
UniProt
VAR_025888
P
1226
S
CFAH_HUMAN
Disease (AHUS1)
---
E
P
1226
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: SUSHI (E:1107-1165,E:1194-1230)
2: ALPHA_2_MACROGLOBULIN (A:14-22)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
E:1107-1165
-
-
E:1194-1230
-
2
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
1
A:14-22
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3oxua_ (A:)
1b: SCOP_d3oxub_ (B:)
1c: SCOP_d3oxuc_ (C:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Complement components
(19)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3oxua_
A:
1b
d3oxub_
B:
1c
d3oxuc_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_A2M_comp_3oxuC01 (C:58-291)
1b: PFAM_A2M_comp_3oxuC02 (C:58-291)
1c: PFAM_A2M_comp_3oxuC03 (C:58-291)
2a: PFAM_Sushi_3oxuF01 (F:1167-1228)
2b: PFAM_Sushi_3oxuF02 (F:1167-1228)
2c: PFAM_Sushi_3oxuF03 (F:1167-1228)
2d: PFAM_Sushi_3oxuF04 (F:1167-1228)
2e: PFAM_Sushi_3oxuF05 (F:1167-1228)
2f: PFAM_Sushi_3oxuF06 (F:1167-1228)
3a: PFAM_Thiol_ester_cl_3oxuC04 (C:6-36)
3b: PFAM_Thiol_ester_cl_3oxuC05 (C:6-36)
3c: PFAM_Thiol_ester_cl_3oxuC06 (C:6-36)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
A2M_comp
(16)
Homo sapiens (Human)
(13)
1a
A2M_comp-3oxuC01
C:58-291
1b
A2M_comp-3oxuC02
C:58-291
1c
A2M_comp-3oxuC03
C:58-291
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
2a
Sushi-3oxuF01
F:1167-1228
2b
Sushi-3oxuF02
F:1167-1228
2c
Sushi-3oxuF03
F:1167-1228
2d
Sushi-3oxuF04
F:1167-1228
2e
Sushi-3oxuF05
F:1167-1228
2f
Sushi-3oxuF06
F:1167-1228
Clan
:
no clan defined [family: Thiol-ester_cl]
(12)
Family
:
Thiol-ester_cl
(12)
Homo sapiens (Human)
(9)
3a
Thiol-ester_cl-3oxuC04
C:6-36
3b
Thiol-ester_cl-3oxuC05
C:6-36
3c
Thiol-ester_cl-3oxuC06
C:6-36
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Asymmetric Unit 1
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Asym.Unit (229 KB)
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