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(-) Description

Title :  PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) N-DOMAIN (57-134) FROM ARCHAEOGLOBUS FULGIDUS FUSED TO GCN4
 
Authors :  M. D. Hartmann, S. Djuranovic, A. Ursinus, K. Zeth, A. N. Lupas
Date :  15 Apr 09  (Deposition) - 28 Apr 09  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Transcription Hydrolase Complex, Nucleotide-Binding, Substrate Recognition, Coiled Coil, Aaa Protein, Chaperone Activity, Atpase, Ob Fold, Cytoplasm, Proteasome, Atp-Binding Amino-Acid Biosynthesis, Transcription, Transcription Regulation, Nucleus, Dna-Binding, Activator, Phosphoprotein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Djuranovic, M. D. Hartmann, M. Habeck, A. Ursinus, P. Zwickl, J. Martin, A. N. Lupas, K. Zeth
Structure And Activity Of The N-Terminal Substrate Recognition Domains In Proteasomal Atpases.
Mol. Cell V. 34 580 2009
PubMed-ID: 19481487  |  Reference-DOI: 10.1016/J.MOLCEL.2009.04.030

(-) Compounds

Molecule 1 - GENERAL CONTROL PROTEIN GCN4, PROTEASOME-ACTIVATING NUCLEOTIDASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 3.6.4.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-DOMAIN (57-134) FUSED TO GCN4, RESIDUES 33-56,57-134
    Organism Scientific: SACCHAROMYCES CEREVISIAE, ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 4932, 2234
    Other Details: NATIVE COILED COIL SUBSTITUTED BY GCN4

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2WG5)

(-) Sites  (0, 0)

(no "Site" information available for 2WG5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WG5)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro B:61 -Pro B:62
2Pro D:61 -Pro D:62
3Pro F:61 -Pro F:62
4Pro H:61 -Pro H:62
5Pro J:61 -Pro J:62
6Pro L:61 -Pro L:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (3, 36)

Asymmetric Unit (3, 36)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_004 *D91AGCN4_YEAST  ---  ---A/B/C/D/E/F/G/H/I/J/K/LD39A
2UniProtVAR_GCN4_YEAST_005 *D125AGCN4_YEAST  ---  ---A/B/C/D/E/F/G/H/I/J/K/LE52A
3UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---A/B/C/D/E/F/G/H/I/J/K/LE99E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (3, 18)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_004 *D91AGCN4_YEAST  ---  ---A/B/C/D/E/FD39A
2UniProtVAR_GCN4_YEAST_005 *D125AGCN4_YEAST  ---  ---A/B/C/D/E/FE52A
3UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---A/B/C/D/E/FE99E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (3, 18)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_004 *D91AGCN4_YEAST  ---  ---G/H/I/J/K/LD39A
2UniProtVAR_GCN4_YEAST_005 *D125AGCN4_YEAST  ---  ---G/H/I/J/K/LE52A
3UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---G/H/I/J/K/LE99E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WG5)

(-) Exons   (0, 0)

(no "Exon" information available for 2WG5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee..........---.....eeeee--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 A  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain A from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee...............eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 A  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain B from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee......hhhh---h....eeee.--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 B  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain B from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee......hhhhh....eeee......eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 B  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain C from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee..........---.....eeeee--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 C  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain C from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee...............eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 C  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain D from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee..........---.....eeee.--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 D  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain D from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee...............eeee......eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 D  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain E from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee..........---.....eeeee--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 E  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain E from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee...............eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 E  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain F from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee......hhhh---h....eeee.--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 F  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain F from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee......hhhhh....eeee......eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 F  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain G from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee..hhhhh...---......eeee--.....eeee.. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 G  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain G from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee..hhhhh.........eeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 G  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain H from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee......hhhh---h....eeeee--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 H  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain H from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee......hhhhh....eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 H  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain I from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee..hhhhh...---.....eeeee--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 I  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain I from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee..hhhhh........eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 I  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain J from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee......hhhh---h....eeeee--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 J  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain J from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee......hhhhh....eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 J  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain K from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee..hhhhh...---.....eeeee--.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 K  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain K from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee..hhhhh........eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 K  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50                                                                           


Chain L from PDB  Type:PROTEIN  Length:87
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:137
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       
           GCN4_YEAST    86 IPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVP 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh-hhhhhhhh--------hh------------hhhhhhh-----------hhh-------..-ee..----.eeee.....eeee....-.eeee......hhhh---h.....eeee--.....eeee.. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------------------------------E-------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wg5 L  34 MKQLEDK-VEELLSKN--------YH------------LENEVAR-----------LRS-------PP-LLVG----VVSDILEDGRVVVKSSTG-PKFVVNTSQYINEEE---LKPGARVALN--QQTLAIVNVLP 120
                                  | 42     |   -    ||   -        52    |    -      | |-      ||63  |    |69        79    | | 88        98|   |  105   |  |113       
                                 40 |     48       49|           51    57          58 |      61| | 66   67               84 |            99 100      109  |          
                                   41               50                               60       62 |                         85                           110          
                                                                                                63                                                                   


Chain L from PDB  Type:PROTEIN  Length:87
 aligned with PAN_ARCFU | O28303 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:108
                                    22        32        42        52        62        72        82        92       102       112        
            PAN_ARCFU    13 LKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh---hhhhhhh-----hh--------hh-----hhhhhhhhhh..ee...eeee.....eeee.....eeee......hhhhh.....eeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) -----A---------------------------------A----------------------------------------------E--------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2wg5 L  34 MKQLED---KVEELLS-----KN--------YH-----LENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
                                 |  40     |   - ||      - ||     52        62        72        82        92       102       112        
                                39  40    46    47|       49|    51                                                                     
                                                 48        50
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WG5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WG5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WG5)

(-) Gene Ontology  (35, 35)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (PAN_ARCFU | O28303)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0010498    proteasomal protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
    GO:0030163    protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0043335    protein unfolding    The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000502    proteasome complex    A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
    GO:0022623    proteasome-activating nucleotidase complex    A homohexameric complex that recognizes and unfolds core proteasome substrate proteins, and translocates them to the core complex in an ATP dependent manner.

Chain A,B,C,D,E,F,G,H,I,J,K,L   (GCN4_YEAST | P03069)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0000981    RNA polymerase II transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0001135    transcription factor activity, RNA polymerase II transcription factor recruiting    The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II.
    GO:0001084    transcription factor activity, TFIID-class binding    Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIID class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0001190    transcriptional activator activity, RNA polymerase II transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to increase the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
    GO:0001191    transcriptional repressor activity, RNA polymerase II transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
biological process
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0010691    negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to nutrient levels    Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0001080    nitrogen catabolite activation of transcription from RNA polymerase II promoter    A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
    GO:0045899    positive regulation of RNA polymerase II transcriptional preinitiation complex assembly    Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
    GO:1903833    positive regulation of cellular response to amino acid starvation    Any process that activates or increases the frequency, rate or extent of cellular response to amino acid starvation.
    GO:0060261    positive regulation of transcription initiation from RNA polymerase II promoter    Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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  PAN_ARCFU | O28303
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(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCN4_YEAST | P03069: 1ce9 1dgc 1env 1fav 1fmh 1gcl 1gcm 1gk6 1gzl 1ihq 1ij0 1ij1 1ij2 1ij3 1kql 1ld4 1llm 1nkn 1piq 1rb4 1rb5 1rb6 1swi 1tmz 1unt 1unu 1unv 1unw 1unx 1uny 1unz 1uo0 1uo1 1uo2 1uo3 1uo4 1uo5 1w5g 1w5h 1w5i 1w5j 1w5k 1w5l 1ysa 1zii 1zij 1zik 1zil 1zim 1zta 2ahp 2b1f 2b22 2bni 2cce 2ccf 2ccn 2d3e 2dgc 2efr 2efs 2g9j 2hy6 2ipz 2k8x 2lpb 2n9b 2nrn 2o7h 2ovn 2vky 2vnl 2wg6 2wpy 2wpz 2wq0 2wq1 2wq2 2wq3 2yny 2ynz 2yo0 2yo1 2yo2 2yo3 2z5h 2z5i 2zta 3azd 3bas 3bat 3ck4 3crp 3g9r 3gjp 3i1g 3i5c 3k7z 3m48 3p8m 3zmf 4c46 4dmd 4g2k 4hu5 4hu6 4niz 4nj0 4nj1 4nj2 4owi 4tl1 5app 5apq 5aps 5apt 5apu 5apv 5apw 5apx 5apy 5apz 5iew 5iir 5iiv 5kht
        PAN_ARCFU | O28303: 2wg6

(-) Related Entries Specified in the PDB File

1ce9 HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER
1dgc GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE DEOXYRIBONUCLEIC ACID
1gcl GCN4 LEUCINE ZIPPER CORE MUTANT P-LI
1gcm GCN4 LEUCINE ZIPPER CORE MUTANT P-LI
1gzl CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET
1ihq GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B
1ij0 COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION
1ij1 GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION
1ij2 GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION
1ij3 GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION
1kql CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA- TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION
1ld4 PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS
1llm CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA
1nkn VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N- TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD
1piq CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED POLAR RESIDUES
1rb1 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION
1rb4 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL AUTOMATIC SOLUTION
1rb5 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TRIGONAL FORM
1rb6 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL FORM
1swi GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE
1tmz TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 STRUCTURES
1unt STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1unu STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1unv STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1unw STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1unx STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1uny STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1unz STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1uo0 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1uo1 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1uo2 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1uo3 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1uo4 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1uo5 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
1w5g AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION).
1w5h AN ANTI-PARALLEL FOUR HELIX BUNDLE.
1w5i ABA DOES NOT AFFECT TOPOLOGY OF PLI.
1w5j AN ANTI-PARALLEL FOUR HELIX BUNDLE
1w5k AN ANTI-PARALLEL FOUR HELIX BUNDLE
1w5l AN ANTI-PARALLEL TO PARALLEL SWITCH.
1ysa GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 DEOXYRIBONUCLEIC ACID
1zii GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE
1zij GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE
1zik GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE
1zil GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE
1zim GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE
1zta LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES)
2b1f ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- 1HYDROPHOBIC HEPTAD REPEAT
2b22 ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- 1HYDROPHOBIC HEPTAD REPEAT
2bni PLI MUTANT E20C L16G Y17H, ANTIPARALLEL
2cce PARALLEL CONFIGURATION OF PLI E20S
2ccf ANTIPARALLEL CONFIGURATION OF PLI E20S
2ccn PLI E20C IS ANTIPARALLEL
2d3e CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF RABBITSKELETAL ALPHA-TROPOMYOSIN
2dgc GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID
2wg6 PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) N- DOMAIN (59-134) FROM ARCHAEOGLOBUS FULGIDUS FUSED TO GCN4, P61A MUTANT
2zta GCN4 LEUCINE ZIPPER