2VKY - JenaLib

Title :   HEADBINDING DOMAIN OF PHAGE P22 TAILSPIKE C-TERMINALLY FUSED TO ISOLEUCINE ZIPPER PIIGCN4 (CHIMERA I)

Authors :   A. Seul, J. J. Mueller, G. Mueller, U. Heinemann, R. Seckler

Date :   04 Jan 08 (Deposition) - 10 Feb 09 (Release) - 15 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : B
Biol. Unit 1: B  (3x)

Keywords :   Head-Binding Domain, Phage P22 Tailspike, Chimera, Hydrolase, Late Protein, Isoleucine Zipper Piigcn4, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Seul, J. J. Mueller, D. Andres, E. Stettner, U. Heinemann, R. Seckle
Bacteriophage P22 Tailspike: Structure Of The Complete Protein And Function Of The Interdomain Linker
Acta Crystallogr. , Sect. D V. 70 1336 2014
PubMed-ID: 24816102 | Reference-DOI: 10.1107/S1399004714002685

Compounds

Molecule 1 - TAIL PROTEIN, PIIGCN4
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET17B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	HEAD-BINDING DOMAIN, RESIDUES 2-124
	Mutation	:	YES
	Organism Common	:	SALMONELLA PHAGE P22, BAKER'S YEAST
	Organism Scientific	:	ENTEROBACTERIA PHAGE P22, SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	10754, 4932
	Other Details	:	AMINO ACIDS 2-124 OF PHAGE P22 TAILSPIKE HAVE BEEN LINKED TO THE ISOLEUCINE ZIPPER PIIGCN4 125-155
	Other Details - Source	:	PIIGCN4, MODIFIED SEQUENCE NCBI GI:5542583
	Strain	:	SALMONELLA ENTERICA TYPHIMURIUM
	Synonym	:	TAILSPIKE-PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain B from PDB  Type:PROTEIN  Length:152
 aligned with FIBER_BPP22 | P12528 from UniProtKB/Swiss-Prot  Length:667

    Alignment length:268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        
          FIBER_BPP22     3 DITANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIG 270
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeee.......hhhh...eeee.....eeee...eee.....eee..ee..ee....eeeeee.....eeeeeeee...hhhhhhhhhhhhhhhhhhhhh---------------------------------hhhhhhhhhhhhhh------------hhh-----------------------------------------------------------------------hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vky B   3 DITANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKLIKQIED---------------------------------KIEEILSKIYHIEN------------EIA-----------------------------------------------------------------------RIKKLIG 154
                                    12        22        32        42        52        62        72        82        92       102       112       122       | -         -         -         - |     139    |    -       147         -         -         -         -         -         -         - |      
                                                                                                                                                         130                               131          144          145 |                                                                     148      
                                                                                                                                                                                                                       147

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (34, 34)

Asymmetric Unit(hide GO term definitions)

Chain B (FIBER_BPP22 | P12528)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
biological process
	GO:0085027	entry into host via enzymatic degradation of host anatomical structure	Penetration by symbiont of a host anatomical structure which provides a barrier to symbiont entry, mediated by symbiont degradative enzymes.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

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	Cis Peptide Bonds
		Gln B:63 - Pro B:64	[ RasMol ]

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	2vky
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Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1clw	TAILSPIKE PROTEIN FROM PHAGE P22, V331A MUTANT
1lkt	CRYSTAL STRUCTURE OF THE HEAD-BINDING DOMAIN OF PHAGE P22TAILSPIKE PROTEIN
1qa1	TAILSPIKE PROTEIN, MUTANT V331G
1qa2	TAILSPIKE PROTEIN, MUTANT A334V
1qa3	TAILSPIKE PROTEIN, MUTANT A334I
1qq1	TAILSPIKE PROTEIN, MUTANT E359G
1qrb	PLASTICITY AND STERIC STRAIN IN A PARALLEL BETA-HELIX:RATIONAL MUTATIONS IN P22 TAILSPIKE PROTEIN
1qrc	TAILSPIKE PROTEIN, MUTANT W391A
1tsp
1tyv	STRUCTURE OF TAILSPIKE-PROTEIN
2vfm	LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE PROTEIN FRAGMENT (109- 666)
2vfn	LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE PROTEIN FRAGMENT (109- 666), MUTANT V125A
2vfo	LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE PROTEIN FRAGMENT (109- 666), MUTANT V125L
2vfp	LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE PROTEIN FRAGMENT (109- 666), MUTANT V349L
2vfq	LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE PROTEIN FRAGMENT (109- 666), MUTANT V450A
2vnl	MUTANT Y108WDEL OF THE HEADBINDING DOMAIN OF PHAGE P22 TAILSPIKE C- TERMINALLY FUSED TO ISOLEUCINE ZIPPER PIIGCN4 (CHIMERA II)
2xc1	FULL-LENGTH TAILSPIKE PROTEIN MUTANT Y108W OF BACTERIOPHAGE P22

Description