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(-) Description

Title :  PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS
 
Authors :  W. Zhang, S. Mukhopadhyay, S. V. Pletnev, T. S. Baker, R. J. Kuhn, M. G. Rossmann
Date :  08 Apr 02  (Deposition) - 04 Nov 02  (Release) - 09 Jun 09  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  11.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P  (60x)
Keywords :  Sindbis Virus, Alphavirus Structure, Cryo-Electron Microscopy, Glycoprotein Organization, Nucleocapsid Structure, Transmembrane Coiled Coils, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, S. Mukhopadhyay, S. V. Pletnev, T. S. Baker, R. J. Kuhn, M. G. Rossmann
Placement Of The Structural Proteins In Sindbis Virus
J. Virol. V. 76 11645 2002
PubMed-ID: 12388725  |  Reference-DOI: 10.1128/JVI.76.22.11645-11658.2002
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAT PROTEIN C
    Chains: A, B, C, D
    EC Number: 3.4.21.-
    Organism Scientific: SINDBIS VIRUS
    Organism Taxid: 11034
    Synonym: CAPSID PROTEIN C
 
Molecule 2 - GENERAL CONTROL PROTEIN GCN4
    Chains: E, F, G, H, I, J, K, L
    Fragment: LEUCINE-ZIPPER (RESIDUES 225-281)
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN
 
Molecule 3 - SPIKE GLYCOPROTEIN E1
    Chains: M, N, O, P
    Organism Scientific: SINDBIS VIRUS
    Organism Taxid: 11034
    Synonym: FUSION PROTEIN E1

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (60x): ABCDEFGHIJKLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric Unit (1, 32)
No.NameCountTypeFull Name
1UNX32Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 1920)
No.NameCountTypeFull Name
1UNX1920Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET M:1195 , PRO M:1197 , GLY M:1198 , ALA M:1199BINDING SITE FOR RESIDUE LYS M1196
2AC2SOFTWAREARG N:4324 , GLU N:4325BINDING SITE FOR RESIDUE UNX N4440
3AC3SOFTWAREMET N:4195 , PRO N:4197 , GLY N:4198 , ALA N:4199BINDING SITE FOR RESIDUE LYS N4196
4AC4SOFTWAREGLU O:5325BINDING SITE FOR RESIDUE UNX O5440
5AC5SOFTWAREMET O:5195 , PRO O:5197 , GLY O:5198 , ALA O:5199BINDING SITE FOR RESIDUE LYS O5196
6AC6SOFTWAREGLU P:6325BINDING SITE FOR RESIDUE UNX P6440
7AC7SOFTWAREMET P:6195 , PRO P:6197 , GLY P:6198 , ALA P:6199BINDING SITE FOR RESIDUE LYS P6196

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1M:1063 -M:1096
2M:1259 -M:1271
3N:4063 -N:4096
4N:4259 -N:4271
5O:5063 -O:5096
6O:5259 -O:5271
7P:6063 -P:6096
8P:6259 -P:6271

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LD4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_SINDV_007 *D919VPOLS_SINDV  ---  ---M
N
O
P		D1113
4113
5113
6113		V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 240)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_SINDV_007 *D919VPOLS_SINDV  ---  ---M
N
O
M/N/O/P		D1113
4113
5113
6113		V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALPHAVIRUS_CPPS51690 Alphavirus core protein (CP) domain profile.POLS_SINDV114-264
 
 
 		  4A:1114-1264
B:4114-4264
C:5114-5264
D:6114-6264
Biological Unit 1 (1, 240)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALPHAVIRUS_CPPS51690 Alphavirus core protein (CP) domain profile.POLS_SINDV114-264
 
 
 		  240A:1114-1264
B:4114-4264
C:5114-5264
D:6114-6264

(-) Exons   (1, 8)

Asymmetric Unit (1, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YEL009C1YEL009C.1V:139763-138918846GCN4_YEAST1-2812818E:1150-1177
F:1250-1277
G:4150-4177
H:4250-4277
I:5150-5177
J:5250-5277
K:6150-6177
L:6250-6277		28
28
28
28
28
28
28
28

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:151
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263 
          POLS_SINDV    114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW  264
               SCOP domains d1ld4a_ A: Structural proteins                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeeeeee..eeeee.....ee...hhhhh..eeehhh.eeeee.hhhhh............eeeee..eeeeee..eeeee...........eee.....eeeeeeeeee...eeeeeeeee.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ALPHAVIRUS_CP  PDB: A:1114-1264 UniProt: 114-264                                                                                                        PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 A 1114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW 1264
                                  1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263 


Chain B from PDB  Type:PROTEIN  Length:151
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:151
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263 
          POLS_SINDV    114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW  264
               SCOP domains d1ld4b_ B: Structural proteins                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeeeeee..eeeee.....ee...hhhhh..eeehhh.eeeee.hhhhh............eeeee..eeeeee..eeeee...........eee.....eeeeeeeeee...eeeeeeeee.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ALPHAVIRUS_CP  PDB: B:4114-4264 UniProt: 114-264                                                                                                        PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 B 4114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW 4264
                                  4123      4133      4143      4153      4163      4173      4183      4193      4203      4213      4223      4233      4243      4253      4263 


Chain C from PDB  Type:PROTEIN  Length:151
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:151
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263 
          POLS_SINDV    114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW  264
               SCOP domains d1ld4c_ C: Structural proteins                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeeeeee..eeeee.....ee...hhhhh..eeehhh.eeeee.hhhhh............eeeee..eeeeee..eeeee...........eee.....eeeeeeeeee...eeeeeeeee.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ALPHAVIRUS_CP  PDB: C:5114-5264 UniProt: 114-264                                                                                                        PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 C 5114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW 5264
                                  5123      5133      5143      5153      5163      5173      5183      5193      5203      5213      5223      5233      5243      5253      5263 


Chain D from PDB  Type:PROTEIN  Length:151
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:151
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263 
          POLS_SINDV    114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW  264
               SCOP domains d1ld4d_ D: Structural proteins                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Peptidase_S3-1ld4D01 D:6114-6264                                                                                                                        Pfam domains (1)
           Pfam domains (2) Peptidase_S3-1ld4D02 D:6114-6264                                                                                                                        Pfam domains (2)
           Pfam domains (3) Peptidase_S3-1ld4D03 D:6114-6264                                                                                                                        Pfam domains (3)
           Pfam domains (4) Peptidase_S3-1ld4D04 D:6114-6264                                                                                                                        Pfam domains (4)
         Sec.struct. author .eeeee.....eeeeeeee..eeeee.....ee...hhhhh..eeehhh.eeeee.hhhhh............eeeee..eeeeee..eeeee...........eee.....eeeeeeeeee...eeeeeeeee.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ALPHAVIRUS_CP  PDB: D:6114-6264 UniProt: 114-264                                                                                                        PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 D 6114 RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW 6264
                                  6123      6133      6143      6153      6163      6173      6183      6193      6203      6213      6223      6233      6243      6253      6263 


Chain E from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4e_ E:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: E:1150-1177   Transcript 1
                1ld4 E 1150 MKQLEDKVEELLSKNYHLENEVARLKKL 1177
                                  1159      1169        


Chain F from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4f_ F:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: F:1250-1277   Transcript 1
                1ld4 F 1250 MKQLEDKVEELLSKNYHLENEVARLKKL 1277
                                  1259      1269        


Chain G from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4g_ G:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: G:4150-4177   Transcript 1
                1ld4 G 4150 MKQLEDKVEELLSKNYHLENEVARLKKL 4177
                                  4159      4169        


Chain H from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4h_ H:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: H:4250-4277   Transcript 1
                1ld4 H 4250 MKQLEDKVEELLSKNYHLENEVARLKKL 4277
                                  4259      4269        


Chain I from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4i_ I:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: I:5150-5177   Transcript 1
                1ld4 I 5150 MKQLEDKVEELLSKNYHLENEVARLKKL 5177
                                  5159      5169        


Chain J from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4j_ J:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: J:5250-5277   Transcript 1
                1ld4 J 5250 MKQLEDKVEELLSKNYHLENEVARLKKL 5277
                                  5259      5269        


Chain K from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4k_ K:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: K:6150-6177   Transcript 1
                1ld4 K 6150 MKQLEDKVEELLSKNYHLENEVARLKKL 6177
                                  6159      6169        


Chain L from PDB  Type:PROTEIN  Length:28
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:28
                                   259       269        
          GCN4_YEAST    250 MKQLEDKVEELLSKNYHLENEVARLKKL  277
               SCOP domains d1ld4l_ L:                   SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: L:6250-6277   Transcript 1
                1ld4 L 6250 MKQLEDKVEELLSKNYHLENEVARLKKL 6277
                                  6259      6269        


Chain M from PDB  Type:PROTEIN  Length:369
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:380
                                   816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186
          POLS_SINDV    807 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains d1ld4m_ M: Structural proteins                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeee.........eeeeeeeeeee.....eeeee..eeee..........................ee..................ee....eeee........eeee.......eeeeeee....eee..ee.............ee..............eeee..eeee.................................ee...........ee....................hhhhh........ee.....eeeeee.............................-----...ee..........................------.ee.......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 M 1001 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYS-----MATLQYVSDREGQCPVHSHSSTATLQESTVH------VTVHFSTASPQANFIVSLCGKKTTCNAEC 1380
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300        |-    | 1320      1330      1340    |    - |    1360      1370      1380
                                                                                                                                                                                                                                                                                                                                             1309  1315                          1345   1352                            


Chain N from PDB  Type:PROTEIN  Length:369
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:380
                                   816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186
          POLS_SINDV    807 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains d1ld4n_ N: Structural proteins                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeee.........eeeeeeeeeee.....eeeee..eeee..........................ee..................ee....eeee........eeee.......eeeeeee....eee..ee.............ee..............eeee..eeee.................................ee...........ee....................hhhhh........ee.....eeeeee.............................-----...ee..........................------.ee.......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 N 4001 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYS-----MATLQYVSDREGQCPVHSHSSTATLQESTVH------VTVHFSTASPQANFIVSLCGKKTTCNAEC 4380
                                  4010      4020      4030      4040      4050      4060      4070      4080      4090      4100      4110      4120      4130      4140      4150      4160      4170      4180      4190      4200      4210      4220      4230      4240      4250      4260      4270      4280      4290      4300        |-    | 4320      4330      4340    |    - |    4360      4370      4380
                                                                                                                                                                                                                                                                                                                                             4309  4315                          4345   4352                            


Chain O from PDB  Type:PROTEIN  Length:369
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:380
                                   816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186
          POLS_SINDV    807 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains d1ld4o_ O: Structural proteins                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeee.........eeeeeeeeeee.....eeeee..eeee..........................ee..................ee....eeee........eeee.......eeeeeee....eee..ee.............ee..............eeee..eeee.................................ee...........ee....................hhhhh........ee.....eeeeee.............................-----...ee..........................------.ee.......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 O 5001 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYS-----MATLQYVSDREGQCPVHSHSSTATLQESTVH------VTVHFSTASPQANFIVSLCGKKTTCNAEC 5380
                                  5010      5020      5030      5040      5050      5060      5070      5080      5090      5100      5110      5120      5130      5140      5150      5160      5170      5180      5190      5200      5210      5220      5230      5240      5250      5260      5270      5280      5290      5300        |-    | 5320      5330      5340    |    - |    5360      5370      5380
                                                                                                                                                                                                                                                                                                                                             5309  5315                          5345   5352                            


Chain P from PDB  Type:PROTEIN  Length:369
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:380
                                   816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186
          POLS_SINDV    807 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains d1ld4p_ P: Structural proteins                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Alpha_E1_glycop-1ld4P01 P:6001-6380                                                                                                                                                                                                                                                                                                                                                          Pfam domains (1)
           Pfam domains (2) Alpha_E1_glycop-1ld4P02 P:6001-6380                                                                                                                                                                                                                                                                                                                                                          Pfam domains (2)
           Pfam domains (3) Alpha_E1_glycop-1ld4P03 P:6001-6380                                                                                                                                                                                                                                                                                                                                                          Pfam domains (3)
           Pfam domains (4) Alpha_E1_glycop-1ld4P04 P:6001-6380                                                                                                                                                                                                                                                                                                                                                          Pfam domains (4)
         Sec.struct. author ....eeee......eeee.........eeeeeeeeeee.....eeeee..eeee..........................ee..................ee....eeee........eeee.......eeeeeee....eee..ee.............ee..............eeee..eeee.................................ee...........ee....................hhhhh........ee.....eeeeee.............................-----...ee..........................------.ee.......................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ld4 P 6001 YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYS-----MATLQYVSDREGQCPVHSHSSTATLQESTVH------VTVHFSTASPQANFIVSLCGKKTTCNAEC 6380
                                  6010      6020      6030      6040      6050      6060      6070      6080      6090      6100      6110      6120      6130      6140      6150      6160      6170      6180      6190      6200      6210      6220      6230      6240      6250      6260      6270      6280      6290      6300        |-    | 6320      6330      6340    |    - |    6360      6370      6380
                                                                                                                                                                                                                                                                                                                                             6309  6315                          6345   6352
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: Low resolution protein structures (283)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1LD4)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: Peptidase_PA (797)
(-)
Clan: no clan defined [family: Alpha_E1_glycop] (11)

(-) Gene Ontology  (52, 52)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,M,N,O,P   (POLS_SINDV | P03316)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
    GO:0044389    ubiquitin-like protein ligase binding    Interacting selectively and non-covalently with a ubiquitin-like protein ligase, such as ubiquitin-ligase.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0061025    membrane fusion    The membrane organization process that joins two lipid bilayers to form a single membrane.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039619    T=4 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres.
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0098029    icosahedral viral capsid, spike    A short structure attached to an icosahedral virion capsid, and used for attachment to the host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain E,F,G,H,I,J,K,L   (GCN4_YEAST | P03069)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0000981    RNA polymerase II transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0001135    transcription factor activity, RNA polymerase II transcription factor recruiting    The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II.
    GO:0001084    transcription factor activity, TFIID-class binding    Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIID class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0001190    transcriptional activator activity, RNA polymerase II transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to increase the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
    GO:0001191    transcriptional repressor activity, RNA polymerase II transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
biological process
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0010691    negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to nutrient levels    Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0001080    nitrogen catabolite activation of transcription from RNA polymerase II promoter    A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
    GO:0045899    positive regulation of RNA polymerase II transcriptional preinitiation complex assembly    Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
    GO:1903833    positive regulation of cellular response to amino acid starvation    Any process that activates or increases the frequency, rate or extent of cellular response to amino acid starvation.
    GO:0060261    positive regulation of transcription initiation from RNA polymerase II promoter    Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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  POLS_SINDV | P03316
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCN4_YEAST | P03069: 1ce9 1dgc 1env 1fav 1fmh 1gcl 1gcm 1gk6 1gzl 1ihq 1ij0 1ij1 1ij2 1ij3 1kql 1llm 1nkn 1piq 1rb4 1rb5 1rb6 1swi 1tmz 1unt 1unu 1unv 1unw 1unx 1uny 1unz 1uo0 1uo1 1uo2 1uo3 1uo4 1uo5 1w5g 1w5h 1w5i 1w5j 1w5k 1w5l 1ysa 1zii 1zij 1zik 1zil 1zim 1zta 2ahp 2b1f 2b22 2bni 2cce 2ccf 2ccn 2d3e 2dgc 2efr 2efs 2g9j 2hy6 2ipz 2k8x 2lpb 2n9b 2nrn 2o7h 2ovn 2vky 2vnl 2wg5 2wg6 2wpy 2wpz 2wq0 2wq1 2wq2 2wq3 2yny 2ynz 2yo0 2yo1 2yo2 2yo3 2z5h 2z5i 2zta 3azd 3bas 3bat 3ck4 3crp 3g9r 3gjp 3i1g 3i5c 3k7z 3m48 3p8m 3zmf 4c46 4dmd 4g2k 4hu5 4hu6 4niz 4nj0 4nj1 4nj2 4owi 4tl1 5app 5apq 5aps 5apt 5apu 5apv 5apw 5apx 5apy 5apz 5iew 5iir 5iiv 5kht
        POLS_SINDV | P03316: 1kxa 1kxb 1kxc 1kxd 1kxe 1kxf 1svp 1z8y 2snv 2snw 3j0f 3muu 3muw

(-) Related Entries Specified in the PDB File

1i9w SEMLIKI FOREST VIRUS GLYCOPROTEIN E1
1wyk SINDBIS VIRUS CAPSID PROTEIN (114-264)
1ysa GCN4 LEUCINE ZIPPER