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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HEAD-TO-TAIL JUNCTION OF TROPOMYOSIN
 
Authors :  K. Murakami, K. Nozawa, K. Tomii, N. Kudou, N. Igarashi, Y. Shirakihara S. Wakatsuki, M. Stewart, T. Yasunaga, T. Wakabayashi
Date :  12 Jul 07  (Deposition) - 22 Apr 08  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x),I (1x),J (1x)
Keywords :  Actin, Troponin, Tropomyosin, Cytoskeleton, Cardiomyopathy, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Murakami, M. Stewart, K. Nozawa, K. Tomii, N. Kudou, N. Igarashi, Y. Shirakihara, S. Wakatsuki, T. Yasunaga, T. Wakabayashi
Structural Basis For Tropomyosin Overlap In Thin (Actin) Filaments And The Generation Of A Molecular Swivel By Troponin-T
Proc. Natl. Acad. Sci. Usa V. 105 7200 2008
PubMed-ID: 18483193  |  Reference-DOI: 10.1073/PNAS.0801950105

(-) Compounds

Molecule 1 - GENERAL CONTROL PROTEIN GCN4 AND TROPOMYOSIN ALPHA-1 CHAIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C TERMINAL DOMAIN OF GCN4 AND TROPOMYOSIN ALPHA-1 CHAIN
    Organism Common: BAKER'S YEAST, RABBIT
    Organism Scientific: SACCHAROMYCES CEREVISIAE, ORYCTOLAGUS CUNICULUS
    Organism Taxid: 4932,9986
    Strain: ,
    Synonym: TM
 
Molecule 2 - TROPOMYOSIN ALPHA-1 CHAIN AND GENERAL CONTROL PROTEIN GCN4
    Chains: I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N TERMINAL DOMAIN OF TROPOMYOSIN ALPHA-1 CHAIN AND C TERMINAL DOMAIN OF GCN4
    Organism Common: RABBIT, BAKER'S YEAST
    Organism Scientific: ORYCTOLAGUS CUNICULUS, SACCHAROMYCES CEREVISIAE
    Organism Taxid: 9986,4932
    Strain: ,
    Synonym: TM

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): AB        
Biological Unit 2 (1x):   CD      
Biological Unit 3 (1x):     EF    
Biological Unit 4 (1x):       GH  
Biological Unit 5 (1x):         IJ
Biological Unit 6 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)I (1x)J (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:1019 , HOH A:1020 , HOH A:1022 , HOH A:1023 , HOH C:292BINDING SITE FOR RESIDUE MG A 1001
2AC2SOFTWAREHOH E:1021 , HOH E:1022 , HOH E:1023 , HOH G:296 , HOH G:297 , HOH G:298BINDING SITE FOR RESIDUE MG E 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z5I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Z5I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 8)

Asymmetric Unit (1, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---A/B/C/D/E/F/G/HE245E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---A/BE245E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---C/DE245E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---E/FE245E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---G/HE245E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (0, 0)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (1, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_GCN4_YEAST_006 *D196EGCN4_YEAST  ---  ---A/B/C/D/E/F/G/HE245E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 20)

Asymmetric Unit (2, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BZIPPS50217 Basic-leucine zipper (bZIP) domain profile.GCN4_YEAST231-276
 
 
 
 
 
 
 
 
 		  10A:262-279
B:262-279
C:262-279
D:262-279
E:262-279
F:262-279
G:262-279
H:262-279
I:5-34
J:5-34
2BZIP_BASICPS00036 Basic-leucine zipper (bZIP) domain signature.GCN4_YEAST231-245
 
 
 
 
 
 
 
 
 		  10A:262-262
B:262-262
C:262-262
D:262-262
E:262-262
F:262-262
G:262-262
H:262-262
I:5-5
J:5-5
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BZIPPS50217 Basic-leucine zipper (bZIP) domain profile.GCN4_YEAST231-276
 
 
 
 
 
 
 
 
 		  2A:262-279
B:262-279
-
-
-
-
-
-
-
-
2BZIP_BASICPS00036 Basic-leucine zipper (bZIP) domain signature.GCN4_YEAST231-245
 
 
 
 
 
 
 
 
 		  2A:262-262
B:262-262
-
-
-
-
-
-
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BZIPPS50217 Basic-leucine zipper (bZIP) domain profile.GCN4_YEAST231-276
 
 
 
 
 
 
 
 
 		  2-
-
C:262-279
D:262-279
-
-
-
-
-
-
2BZIP_BASICPS00036 Basic-leucine zipper (bZIP) domain signature.GCN4_YEAST231-245
 
 
 
 
 
 
 
 
 		  2-
-
C:262-262
D:262-262
-
-
-
-
-
-
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BZIPPS50217 Basic-leucine zipper (bZIP) domain profile.GCN4_YEAST231-276
 
 
 
 
 
 
 
 
 		  2-
-
-
-
E:262-279
F:262-279
-
-
-
-
2BZIP_BASICPS00036 Basic-leucine zipper (bZIP) domain signature.GCN4_YEAST231-245
 
 
 
 
 
 
 
 
 		  2-
-
-
-
E:262-262
F:262-262
-
-
-
-
Biological Unit 4 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BZIPPS50217 Basic-leucine zipper (bZIP) domain profile.GCN4_YEAST231-276
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:262-279
H:262-279
-
-
2BZIP_BASICPS00036 Basic-leucine zipper (bZIP) domain signature.GCN4_YEAST231-245
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:262-262
H:262-262
-
-
Biological Unit 5 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BZIPPS50217 Basic-leucine zipper (bZIP) domain profile.GCN4_YEAST231-276
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
I:5-34
J:5-34
2BZIP_BASICPS00036 Basic-leucine zipper (bZIP) domain signature.GCN4_YEAST231-245
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
I:5-5
J:5-5
Biological Unit 6 (2, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BZIPPS50217 Basic-leucine zipper (bZIP) domain profile.GCN4_YEAST231-276
 
 
 
 
 
 
 
 
 		  10A:262-279
B:262-279
C:262-279
D:262-279
E:262-279
F:262-279
G:262-279
H:262-279
I:5-34
J:5-34
2BZIP_BASICPS00036 Basic-leucine zipper (bZIP) domain signature.GCN4_YEAST231-245
 
 
 
 
 
 
 
 
 		  10A:262-262
B:262-262
C:262-262
D:262-262
E:262-262
F:262-262
G:262-262
H:262-262
I:5-5
J:5-5

(-) Exons   (0, 0)

(no "Exon" information available for 2Z5I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:49
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:89
                                   192       202       212       222       232       242       252       262         
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 271
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2z5iA00 A: 233-281                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------... Sec.struct. author
                 SAPs(SNPs) -------------E--------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     -------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: A:262-279 UniProt: 231-276     PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2z5i A 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDM 281
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |  
                                   242 |      252               253  258  | |          262 266 |        278     279  
                                     243                                259 |                267                     
                                                                          261                                        


Chain A from PDB  Type:PROTEIN  Length:49
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:94
                                   197       207       217       227       237       247       257       267       277    
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iA00 A                          :233-281                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2z5i A 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 281
                            |        -         -|      | -         -         -    |  247       257       267       277    
                          233                 234    241                        242                                       


Chain B from PDB  Type:PROTEIN  Length:49
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:89
                                   192       202       212       222       232       242       252       262         
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 271
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2z5iB00 B: 233-281                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------hh. Sec.struct. author
                 SAPs(SNPs) -------------E--------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     -------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: B:262-279 UniProt: 231-276     PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2z5i B 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDM 281
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |  
                                   242 |      252               253  258  | |          262 266 |        278     279  
                                     243                                259 |                267                     
                                                                          261                                        


Chain B from PDB  Type:PROTEIN  Length:49
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:94
                                   197       207       217       227       237       247       257       267       277    
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iB00 B                          :233-281                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2z5i B 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 281
                            |        -         -|      | -         -         -    |  247       257       267       277    
                          233                 234    241                        242                                       


Chain C from PDB  Type:PROTEIN  Length:50
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:90
                                   192       202       212       222       232       242       252       262       272
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 272
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2z5iC00 C: 233-282                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------hhhh Sec.struct. author
                 SAPs(SNPs) -------------E---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     --------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: C:262-279 UniProt: 231-276      PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 2z5i C 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDMT 282
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |282
                                   242 |      252               253  258  | |          262 266 |        278     279   
                                     243                                259 |                267                      
                                                                          261                                         


Chain C from PDB  Type:PROTEIN  Length:50
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:95
                                   197       207       217       227       237       247       257       267       277     
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iC00 C                          :233-282                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 2z5i C 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMT 282
                            |        -         -|      | -         -         -    |  247       257       267       277     
                          233                 234    241                        242                                        


Chain D from PDB  Type:PROTEIN  Length:49
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:89
                                   192       202       212       222       232       242       252       262         
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 271
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2z5iD00 D: 233-281                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------hhh Sec.struct. author
                 SAPs(SNPs) -------------E--------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     -------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: D:262-279 UniProt: 231-276     PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2z5i D 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDM 281
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |  
                                   242 |      252               253  258  | |          262 266 |        278     279  
                                     243                                259 |                267                     
                                                                          261                                        


Chain D from PDB  Type:PROTEIN  Length:49
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:94
                                   197       207       217       227       237       247       257       267       277    
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iD00 D                          :233-281                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2z5i D 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 281
                            |        -         -|      | -         -         -    |  247       257       267       277    
                          233                 234    241                        242                                       


Chain E from PDB  Type:PROTEIN  Length:49
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:89
                                   192       202       212       222       232       242       252       262         
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 271
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2z5iE00 E: 233-281                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------... Sec.struct. author
                 SAPs(SNPs) -------------E--------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     -------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: E:262-279 UniProt: 231-276     PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2z5i E 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDM 281
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |  
                                   242 |      252               253  258  | |          262 266 |        278     279  
                                     243                                259 |                267                     
                                                                          261                                        


Chain E from PDB  Type:PROTEIN  Length:49
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:94
                                   197       207       217       227       237       247       257       267       277    
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iE00 E                          :233-281                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2z5i E 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 281
                            |        -         -|      | -         -         -    |  247       257       267       277    
                          233                 234    241                        242                                       


Chain F from PDB  Type:PROTEIN  Length:49
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:89
                                   192       202       212       222       232       242       252       262         
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 271
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2z5iF00 F: 233-281                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------hh. Sec.struct. author
                 SAPs(SNPs) -------------E--------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     -------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: F:262-279 UniProt: 231-276     PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2z5i F 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDM 281
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |  
                                   242 |      252               253  258  | |          262 266 |        278     279  
                                     243                                259 |                267                     
                                                                          261                                        


Chain F from PDB  Type:PROTEIN  Length:49
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:94
                                   197       207       217       227       237       247       257       267       277    
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iF00 F                          :233-281                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2z5i F 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 281
                            |        -         -|      | -         -         -    |  247       257       267       277    
                          233                 234    241                        242                                       


Chain G from PDB  Type:PROTEIN  Length:50
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:90
                                   192       202       212       222       232       242       252       262       272
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 272
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2z5iG00 G: 233-282                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------hhhh Sec.struct. author
                 SAPs(SNPs) -------------E---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     --------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: G:262-279 UniProt: 231-276      PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 2z5i G 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDMT 282
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |282
                                   242 |      252               253  258  | |          262 266 |        278     279   
                                     243                                259 |                267                      
                                                                          261                                         


Chain G from PDB  Type:PROTEIN  Length:50
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:95
                                   197       207       217       227       237       247       257       267       277     
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iG00 G                          :233-282                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 2z5i G 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMT 282
                            |        -         -|      | -         -         -    |  247       257       267       277     
                          233                 234    241                        242                                        


Chain H from PDB  Type:PROTEIN  Length:49
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:89
                                   192       202       212       222       232       242       252       262         
           GCN4_YEAST   183 NSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 271
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2z5iH00 H: 233-281                                                                        CATH domains
           Pfam domains (1) ---------------------------------------Tropo--myo------------sin-2-z5iH01      -------    Pfam domains (1)
           Pfam domains (2) ---------------------------------------Tropo--myo------------sin-2-z5iH02      -------    Pfam domains (2)
           Pfam domains (3) ---------------------------------------Tropo--myo------------sin-2-z5iH03      -------    Pfam domains (3)
           Pfam domains (4) ---------------------------------------Tropo--myo------------sin-2-z5iH04      -------    Pfam domains (4)
           Pfam domains (5) ---------------------------------------Tropo--myo------------sin-2-z5iH05      -------    Pfam domains (5)
           Pfam domains (6) ---------------------------------------Tropo--myo------------sin-2-z5iH06      -------    Pfam domains (6)
           Pfam domains (7) ---------------------------------------Tropo--myo------------sin-2-z5iH07      -------    Pfam domains (7)
           Pfam domains (8) ---------------------------------------Tropo--myo------------sin-2-z5iH08      -------    Pfam domains (8)
         Sec.struct. author hhhhhhhhhh-hhhhhhhhhh-----------------hhhhhh--hhh------------hhhhh-hhhhhhhhhhhh-------hhh Sec.struct. author
                 SAPs(SNPs) -------------E--------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------BZIP_BASIC     -------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------BZIP  PDB: H:262-279 UniProt: 231-276     PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2z5i H 233 GELLSKNYHL-ENEVARLKKL-----------------VDDLED--ELY------------AQKLK-YKAISEELDHAL-------NDM 281
                                   242 |     251|        -       254   |  | |-         - |   | 269        |-      |  
                                   242 |      252               253  258  | |          262 266 |        278     279  
                                     243                                259 |                267                     
                                                                          261                                        


Chain H from PDB  Type:PROTEIN  Length:49
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:94
                                   197       207       217       227       237       247       257       267       277    
           TPM1_RABIT   188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2                   z5iH00 H                          :233-281                                 CATH domains
           Pfam domains (1) ------------------------------------------------------------------Tropomyosin-2z5iH01          Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------Tropomyosin-2z5iH02          Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------Tropomyosin-2z5iH03          Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------Tropomyosin-2z5iH04          Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------Tropomyosin-2z5iH05          Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------Tropomyosin-2z5iH06          Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------Tropomyosin-2z5iH07          Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------Tropomyosin-2z5iH08          Pfam domains (8)
         Sec.struct. author h-------------------hhhhhhhh--------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------E------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2z5i H 233 G-------------------ELLSKNYH--------------------------LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 281
                            |        -         -|      | -         -         -    |  247       257       267       277    
                          233                 234    241                        242                                       


Chain I from PDB  Type:PROTEIN  Length:36
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:54
                                   234       244       254       264       274    
           GCN4_YEAST   225 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 278
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author hh--hhh-------------hhhh-hhhhhh--hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------BZIP_BASIC     --------------------------------- PROSITE (1)
                PROSITE (2) ------BZIP  PDB: I:5-34 UniProt: 231-276            -- PROSITE (2)
                 Transcript ------------------------------------------------------ Transcript
                 2z5i I   1 MD--AIK-------------KKMQ-MLKLDK--ENALDRAEQLENEVARLKKLV  36
                             |  | |  -         -|  | |  14|  |    22        32    
                             2  3 5             6  9 |   15 16                    
                                                    10                            


Chain I from PDB  Type:PROTEIN  Length:36
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:50
                                    10        20        30        40        50
           TPM1_RABIT     1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKL  50
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh--------------hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 2z5i I   1 MDAIKKKMQMLKLDKENALDRAEQ--------------LENEVARLKKLV  36
                                    10        20   |     -        26        36
                                                  24             25           


Chain J from PDB  Type:PROTEIN  Length:36
 aligned with GCN4_YEAST | P03069 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:54
                                   234       244       254       264       274    
           GCN4_YEAST   225 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 278
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
           Pfam domains (1) ------------------------------------------bZIP_1-2z5iJ Pfam domains (1)
           Pfam domains (2) ------------------------------------------bZIP_1-2z5iJ Pfam domains (2)
           Pfam domains (3) ------------------------------------------bZIP_1-2z5iJ Pfam domains (3)
           Pfam domains (4) ------------------------------------------bZIP_1-2z5iJ Pfam domains (4)
           Pfam domains (5) ------------------------------------------bZIP_1-2z5iJ Pfam domains (5)
           Pfam domains (6) ------------------------------------------bZIP_1-2z5iJ Pfam domains (6)
           Pfam domains (7) ------------------------------------------bZIP_1-2z5iJ Pfam domains (7)
           Pfam domains (8) ------------------------------------------bZIP_1-2z5iJ Pfam domains (8)
           Pfam domains (9) ------------------------------------------bZIP_1-2z5iJ Pfam domains (9)
          Pfam domains (10) ------------------------------------------bZIP_1-2z5iJ Pfam domains (10)
         Sec.struct. author hh--hhh-------------hhhh-hhhhhh--hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------BZIP_BASIC     --------------------------------- PROSITE (1)
                PROSITE (2) ------BZIP  PDB: J:5-34 UniProt: 231-276            -- PROSITE (2)
                 Transcript ------------------------------------------------------ Transcript
                 2z5i J   1 MD--AIK-------------KKMQ-MLKLDK--ENALDRAEQLENEVARLKKLV  36
                             |  | |  -         -|  | |  14|  |    22        32    
                             2  3 5             6  9 |   15 16                    
                                                    10                            


Chain J from PDB  Type:PROTEIN  Length:36
 aligned with TPM1_RABIT | P58772 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:50
                                    10        20        30        40        50
           TPM1_RABIT     1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKL  50
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------bZIP_1-2z5iJ Pfam domains (1)
           Pfam domains (2) --------------------------------------bZIP_1-2z5iJ Pfam domains (2)
           Pfam domains (3) --------------------------------------bZIP_1-2z5iJ Pfam domains (3)
           Pfam domains (4) --------------------------------------bZIP_1-2z5iJ Pfam domains (4)
           Pfam domains (5) --------------------------------------bZIP_1-2z5iJ Pfam domains (5)
           Pfam domains (6) --------------------------------------bZIP_1-2z5iJ Pfam domains (6)
           Pfam domains (7) --------------------------------------bZIP_1-2z5iJ Pfam domains (7)
           Pfam domains (8) --------------------------------------bZIP_1-2z5iJ Pfam domains (8)
           Pfam domains (9) --------------------------------------bZIP_1-2z5iJ Pfam domains (9)
          Pfam domains (10) --------------------------------------bZIP_1-2z5iJ Pfam domains (10)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh--------------hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 2z5i J   1 MDAIKKKMQMLKLDKENALDRAEQ--------------LENEVARLKKLV  36
                                    10        20   |     -        26        36
                                                  24             25
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Z5I)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 18)

Asymmetric Unit
(-)
Clan: Tropomyosin-lke (4)
(-)
Clan: bZIP (54)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (GCN4_YEAST | P03069)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0000981    RNA polymerase II transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0001135    transcription factor activity, RNA polymerase II transcription factor recruiting    The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II.
    GO:0001084    transcription factor activity, TFIID-class binding    Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIID class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0001190    transcriptional activator activity, RNA polymerase II transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to increase the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
    GO:0001191    transcriptional repressor activity, RNA polymerase II transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
biological process
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0010691    negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to nutrient levels    Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0001080    nitrogen catabolite activation of transcription from RNA polymerase II promoter    A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
    GO:0045899    positive regulation of RNA polymerase II transcriptional preinitiation complex assembly    Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
    GO:1903833    positive regulation of cellular response to amino acid starvation    Any process that activates or increases the frequency, rate or extent of cellular response to amino acid starvation.
    GO:0060261    positive regulation of transcription initiation from RNA polymerase II promoter    Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

Chain A,B,C,D,E,F,G,H,I,J   (TPM1_RABIT | P58772)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

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(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCN4_YEAST | P03069: 1ce9 1dgc 1env 1fav 1fmh 1gcl 1gcm 1gk6 1gzl 1ihq 1ij0 1ij1 1ij2 1ij3 1kql 1ld4 1llm 1nkn 1piq 1rb4 1rb5 1rb6 1swi 1tmz 1unt 1unu 1unv 1unw 1unx 1uny 1unz 1uo0 1uo1 1uo2 1uo3 1uo4 1uo5 1w5g 1w5h 1w5i 1w5j 1w5k 1w5l 1ysa 1zii 1zij 1zik 1zil 1zim 1zta 2ahp 2b1f 2b22 2bni 2cce 2ccf 2ccn 2d3e 2dgc 2efr 2efs 2g9j 2hy6 2ipz 2k8x 2lpb 2n9b 2nrn 2o7h 2ovn 2vky 2vnl 2wg5 2wg6 2wpy 2wpz 2wq0 2wq1 2wq2 2wq3 2yny 2ynz 2yo0 2yo1 2yo2 2yo3 2z5h 2zta 3azd 3bas 3bat 3ck4 3crp 3g9r 3gjp 3i1g 3i5c 3k7z 3m48 3p8m 3zmf 4c46 4dmd 4g2k 4hu5 4hu6 4niz 4nj0 4nj1 4nj2 4owi 4tl1 5app 5apq 5aps 5apt 5apu 5apv 5apw 5apx 5apy 5apz 5iew 5iir 5iiv 5kht
        TPM1_RABIT | P58772: 2d3e 2efr 2efs 2tma 2w49 2w4u 2z5h 4a7f 4a7h 4a7l

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2Z5I)