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(-) Description

Title :  CRYSTAL STRUCTURE OF THE P115RHOGEF RGRGS DOMAIN IN A COMPLEX WITH GALPHA(13):GALPHA(I1) CHIMERA
 
Authors :  Z. Chen, W. D. Singer, P. C. Sternweis, S. R. Sprang
Date :  26 Feb 04  (Deposition) - 18 Jan 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,C,D,F
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  D,F  (1x)
Biol. Unit 3:  A,C,D,F  (1x)
Keywords :  Signal Transduction, Protein Complex, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Chen, W. D. Singer, P. C. Sternweis, S. R. Sprang
Structure Of The P115Rhogef Rgrgs Domain-Galpha13/I1 Chimera Complex Suggests Convergent Evolution Of A Gtpase Activator.
Nat. Struct. Mol. Biol. V. 12 191 2005
PubMed-ID: 15665872  |  Reference-DOI: 10.1038/NSMB888
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GUANINE NUCLEOTIDE-BINDING PROTEIN GALPHA(13) :GALPHA(I1) CHIMERA
    ChainsA, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainJM109(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRESIDUES 21-47, 185-210, 213-230, 240-353 OF GALPHA(I1) AND RESIDUES 64-207, 234-235, 254-262 OF GALPHA(13)
    Organism CommonHOUSE MOUSE, NORWAY RAT
    Organism ScientificMUS MUSCULUS, RATTUS NORVEGICUS
    Organism Taxid10090,10116
    Strain,
 
Molecule 2 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 1
    ChainsC, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPTRCC
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentN-TERMINAL RHOGEF RGS (RGRGS) DOMAIN OF P115RHOGEF (RESIDUES 7-239)
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymP115-RHOGEF, P115RHOGEF, 115 KDA GUANINE NUCLEOTIDE EXCHANGE FACTOR, SUB1.5

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ACDF
Biological Unit 1 (1x)AC  
Biological Unit 2 (1x)  DF
Biological Unit 3 (1x)ACDF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ALF2Ligand/IonTETRAFLUOROALUMINATE ION
2GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ALF1Ligand/IonTETRAFLUOROALUMINATE ION
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ALF1Ligand/IonTETRAFLUOROALUMINATE ION
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1ALF2Ligand/IonTETRAFLUOROALUMINATE ION
2GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:62 , THR A:203 , ALF A:378 , GDP A:475BINDING SITE FOR RESIDUE MG A 377
2AC2SOFTWARESER D:62 , THR D:203 , ALF D:378 , GDP D:476 , HOH D:502BINDING SITE FOR RESIDUE MG D 377
3AC3SOFTWAREGLY A:57 , GLU A:58 , LYS A:61 , ARG A:200 , THR A:203 , VAL A:223 , GLY A:225 , GLN A:226 , MG A:377 , GDP A:475 , HOH A:543BINDING SITE FOR RESIDUE ALF A 378
4AC4SOFTWAREGLY D:57 , GLU D:58 , LYS D:61 , ARG D:200 , PRO D:202 , THR D:203 , GLY D:225 , GLN D:226 , MG D:377 , GDP D:476 , HOH D:502 , HOH D:550BINDING SITE FOR RESIDUE ALF D 378
5AC5SOFTWAREGLU A:58 , SER A:59 , GLY A:60 , LYS A:61 , SER A:62 , THR A:63 , LEU A:197 , LEU A:198 , ARG A:200 , ASN A:291 , LYS A:292 , ASP A:294 , LEU A:295 , ALA A:348 , THR A:349 , MG A:377 , ALF A:378BINDING SITE FOR RESIDUE GDP A 475
6AC6SOFTWAREGLU D:58 , SER D:59 , GLY D:60 , LYS D:61 , SER D:62 , THR D:63 , SER D:173 , LEU D:197 , LEU D:198 , ARG D:200 , ASN D:291 , LYS D:292 , ASP D:294 , CYS D:347 , ALA D:348 , THR D:349 , MG D:377 , ALF D:378BINDING SITE FOR RESIDUE GDP D 476

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SHZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SHZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1CancerSNPVAR_ARHG1_HUMAN_CCDS12590_1_01 *M165MARHG1_HUMANDisease (Colorectal cancer)  ---C/FV165M
2UniProtVAR_035969M165VARHG1_HUMANUnclassified  ---C/FM165V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1CancerSNPVAR_ARHG1_HUMAN_CCDS12590_1_01 *M165MARHG1_HUMANDisease (Colorectal cancer)  ---CV165M
2UniProtVAR_035969M165VARHG1_HUMANUnclassified  ---CM165V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1CancerSNPVAR_ARHG1_HUMAN_CCDS12590_1_01 *M165MARHG1_HUMANDisease (Colorectal cancer)  ---FV165M
2UniProtVAR_035969M165VARHG1_HUMANUnclassified  ---FM165V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1CancerSNPVAR_ARHG1_HUMAN_CCDS12590_1_01 *M165MARHG1_HUMANDisease (Colorectal cancer)  ---C/FV165M
2UniProtVAR_035969M165VARHG1_HUMANUnclassified  ---C/FM165V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SHZ)

(-) Exons   (7, 14)

Asymmetric Unit (7, 14)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003545321bENSE00001053104chr19:42387267-4238735690ARHG1_HUMAN-00--
1.3ENST000003545323ENSE00002160017chr19:42392135-4239217743ARHG1_HUMAN1-880--
1.4ENST000003545324ENSE00001796026chr19:42392263-4239234987ARHG1_HUMAN9-37292C:16-37
F:17-34
22
18
1.5ENST000003545325ENSE00001629400chr19:42392823-42392936114ARHG1_HUMAN38-75382C:44-75
F:44-75
32
32
1.6ENST000003545326ENSE00001605951chr19:42396096-4239619499ARHG1_HUMAN76-108332C:76-108 (gaps)
F:76-108 (gaps)
33
33
1.7ENST000003545327ENSE00001614868chr19:42396402-4239644443ARHG1_HUMAN109-123152C:109-122
F:109-122
14
14
1.8ENST000003545328ENSE00001706685chr19:42396674-42396920247ARHG1_HUMAN123-205832C:133-205
F:134-205 (gaps)
73
72
1.9ENST000003545329ENSE00001771138chr19:42397345-4239737430ARHG1_HUMAN205-215112C:205-215
F:205-215
11
11
1.10ENST0000035453210ENSE00001613938chr19:42398280-42398379100ARHG1_HUMAN215-248342C:215-233
F:215-233
19
19
1.11ENST0000035453211ENSE00001731644chr19:42398524-4239862097ARHG1_HUMAN249-281330--
1.12ENST0000035453212ENSE00001712166chr19:42398699-4239873436ARHG1_HUMAN281-293130--
1.13ENST0000035453213ENSE00001682337chr19:42399422-42399559138ARHG1_HUMAN293-339470--
1.14aENST0000035453214aENSE00000492791chr19:42400450-42400555106ARHG1_HUMAN339-374360--
1.15dENST0000035453215dENSE00000708622chr19:42402591-42402736146ARHG1_HUMAN374-423500--
1.16ENST0000035453216ENSE00000708620chr19:42406037-42406183147ARHG1_HUMAN423-472500--
1.17ENST0000035453217ENSE00000708617chr19:42406424-4240650683ARHG1_HUMAN472-499280--
1.18ENST0000035453218ENSE00000708615chr19:42406683-42406808126ARHG1_HUMAN500-541420--
1.19ENST0000035453219ENSE00000708613chr19:42406934-42407048115ARHG1_HUMAN542-580390--
1.20ENST0000035453220ENSE00000708611chr19:42407457-42407557101ARHG1_HUMAN580-613340--
1.22ENST0000035453222ENSE00000708609chr19:42407859-4240793678ARHG1_HUMAN614-639260--
1.23ENST0000035453223ENSE00000708607chr19:42408187-4240826276ARHG1_HUMAN640-665260--
1.24ENST0000035453224ENSE00000708605chr19:42408368-42408535168ARHG1_HUMAN665-721570--
1.25ENST0000035453225ENSE00000708603chr19:42409101-4240918888ARHG1_HUMAN721-750300--
1.26ENST0000035453226ENSE00000708602chr19:42409327-4240941387ARHG1_HUMAN750-779300--
1.27ENST0000035453227ENSE00000708601chr19:42409912-4240997968ARHG1_HUMAN779-802240--
1.28ENST0000035453228ENSE00000708600chr19:42410091-4241017787ARHG1_HUMAN802-831300--
1.29ENST0000035453229ENSE00000708599chr19:42410609-42410772164ARHG1_HUMAN831-885550--
1.30ENST0000035453230ENSE00001660749chr19:42410855-42410955101ARHG1_HUMAN886-912270--
1.31ENST0000035453231ENSE00001691041chr19:42411257-42411597341ARHG1_HUMAN-00--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:326
 aligned with GNA13_MOUSE | P27601 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:327
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       
          GNA13_MOUSE    46 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 372
               SCOP domains d1shza2 A:46-75,A:201-371     d1shza1 A:76-200 Transducin (alpha subunit), insertion domain                                                                d1shza2 A:46-75,A:201-371 Transducin (alpha subunit)                                                                                                                         SCOP domains
               CATH domains 1shzA01 A:46-76,A:203-371      1shzA02 A:77-202 GI Alpha 1, domain 2-like                                                                                    1shzA01 A:46-76,A:203-371 P-loop containing nucleotide triphosphate hydrolases                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhh.......eeeeeee..eeeeeee...hhhhhhhhhhhh....eeeeeee..............hhhhhhhhhhhhhh.hhhhh..eeeeeeehhhhhhhhhhhh...........-..hhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1shz A  46 AREVKLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG-SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 371
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305        |-|      324       334       344       354       364       
                                                                                                                                                                                                                                                                                                      314 |                                                        
                                                                                                                                                                                                                                                                                                        315                                                        

Chain C from PDB  Type:PROTEIN  Length:196
 aligned with ARHG1_HUMAN | Q92888 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:218
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225        
          ARHG1_HUMAN    16 PGLVPVSIIGAEDEDFENELETNSEEQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
               SCOP domains d1shzc_ C: automated m      atches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.......hhhhh.....------....hhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...------.hhhhhhhh.............hhhhhhh.----------.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: C:16-37Exon 1.5  PDB: C:44-75 UniProt: 38-75 Exon 1.6  PDB: C:76-108 (gaps)   Exon 1.7       -------------------------------------------------------------------------------------------Exon 1.10           Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------Exon 1.8  PDB: C:133-205 UniProt: 123-205 [INCOMPLETE]                             ---------------------------- Transcript 1 (2)
           Transcript 1 (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9   ------------------ Transcript 1 (3)
                 1shz C  16 PGLVPVSIIGAEDEDFENELET------SQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGS------KKAFLDFYHSFLEKTAVLRVPVPPNVAFEL----------DVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
                                    25        35 |      45        55        65        75        85|      |95       105       115      |  -       135       145       155       165       175       185       195       205       215       225        
                                                37     44                                        86     93                          122        133                                                                                                    

Chain D from PDB  Type:PROTEIN  Length:327
 aligned with GNA13_MOUSE | P27601 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:328
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364        
          GNA13_MOUSE    45 VKRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 372
               SCOP domains -d1shzd2 D:46-75,D:201-371     d1shzd1 D:76-200 Transducin (alpha subunit), insertion domain                                                                d1shzd2 D:46-75,D:201-371 Transducin (alpha subunit)                                                                                                                         SCOP domains
               CATH domains 1shzD01 D:45-76,D:203-371       1shzD02 D:77-202 GI Alpha 1, domain 2-like                                                                                    1shzD01 D:45-76,D:203-371 P-loop containing nucleotide triphosphate hydrolases                                                                                             CATH domains
           Pfam domains (1) ----G-alpha-1shzD01 D:49-299                                                                                                                                                                                                                                   ------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----G-alpha-1shzD02 D:49-299                                                                                                                                                                                                                                   ------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhhhh.......eeeeeee..eeeeeee...hhhhhhhhhhhh....eeeeeee..............hhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh......-..hhhhhhhhhhhhhhh.........eeee.....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1shz D  45 AAREVKLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG-SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 371
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 |     323       333       343       353       363        
                                                                                                                                                                                                                                                                                                       314 |                                                        
                                                                                                                                                                                                                                                                                                         315                                                        

Chain F from PDB  Type:PROTEIN  Length:188
 aligned with ARHG1_HUMAN | Q92888 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:217
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
          ARHG1_HUMAN    17 GLVPVSIIGAEDEDFENELETNSEEQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
               SCOP domains d1shzf_ F: automat         ed matches                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------         RGS-like-1shzF01 F:44-232                                                                                                                                                                    - Pfam domains (1)
           Pfam domains (2) ------------------         RGS-like-1shzF02 F:44-232                                                                                                                                                                    - Pfam domains (2)
         Sec.struct. author .eee..............---------....hhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhh..---..hhhhhhhhhhhhh...........hhhhhh..-----------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..------hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: F:17-3Exon 1.5  PDB: F:44-75 UniProt: 38-75 Exon 1.6  PDB: F:76-108 (gaps)   Exon 1.7       -------------------------------------------------------------------------------------------Exon 1.10           Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------Exon 1.8  PDB: F:134-205 (gaps) UniProt: 123-205 [INCOMPLETE]                      ---------------------------- Transcript 1 (2)
           Transcript 1 (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9   ------------------ Transcript 1 (3)
                 1shz F  17 GLVPVSIIGAEDEDFENE---------SQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLG---PKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFEL-----------VQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAW------SYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
                                    26       | -       |46        56        66        76        |-  |     96       106       116     |   -       136       146       156       166       176 |     186       196       206       216       226       
                                            34        44                                       85  89                              122         134                                         178    185                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 4)

Asymmetric Unit
(-)
Clan: RGS (17)

(-) Gene Ontology  (61, 84)

Asymmetric Unit(hide GO term definitions)
Chain A,D   (GNA13_MOUSE | P27601)
molecular function
    GO:0031752    D5 dopamine receptor binding    Interacting selectively and non-covalently with a D5 dopamine receptor.
    GO:0031683    G-protein beta/gamma-subunit complex binding    Interacting selectively and non-covalently with a complex of G-protein beta/gamma subunits.
    GO:0001664    G-protein coupled receptor binding    Interacting selectively and non-covalently with a G-protein coupled receptor.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0019001    guanyl nucleotide binding    Interacting selectively and non-covalently with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0031702    type 1 angiotensin receptor binding    Interacting selectively and non-covalently with a type 1 angiotensin receptor.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007266    Rho protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state.
    GO:0031584    activation of phospholipase D activity    Any process that initiates the activity of inactive phospholipase D.
    GO:0007189    adenylate cyclase-activating G-protein coupled receptor signaling pathway    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds through activation of adenylyl cyclase activity and a subsequent increase in the concentration of cyclic AMP (cAMP).
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0001569    branching involved in blood vessel morphogenesis    The process of coordinated growth and sprouting of blood vessels giving rise to the organized vascular system.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0007204    positive regulation of cytosolic calcium ion concentration    Any process that increases the concentration of calcium ions in the cytosol.
    GO:0030334    regulation of cell migration    Any process that modulates the frequency, rate or extent of cell migration.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
cellular component
    GO:0031526    brush border membrane    The portion of the plasma membrane surrounding the brush border.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0005834    heterotrimeric G-protein complex    Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein.
    GO:0042470    melanosome    A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C,F   (ARHG1_HUMAN | Q92888)
molecular function
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0005089    Rho guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007266    Rho protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state.
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0050771    negative regulation of axonogenesis    Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0035023    regulation of Rho protein signal transduction    Any process that modulates the frequency, rate or extent of Rho protein signal transduction.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARHG1_HUMAN | Q928881iap 3ab3 3odo 3odw 3odx 3p6a
        GNA13_MOUSE | P276011zcb 3ab3 3cx6 3cx7 3cx8
        GNAI1_RAT | P108241agr 1as0 1as2 1as3 1bh2 1bof 1cip 1fqj 1fqk 1gdd 1gfi 1gg2 1gia 1gil 1git 1gp2 1svk 1svs 2bcj 2rgn 2zjy 2zjz 3ah8 3d7m 3ffa 3ffb 3v00 4n0d 4n0e 4pam 4pan 4pao 4paq 5kdl 5kdo

(-) Related Entries Specified in the PDB File

1agr COMPLEX OF ALF4-ACTIVATED GALPHA(I1) WITH RGS4
1azs COMPLEX OF GS- WITH THE CATALYTIC DOMAINS OF MAMMALIAN ADENYLYL CYCLASE
1fqj CRYSTAL STRUCTURE OF THE HETEROTRIMERIC COMPLEX OF THE RGS DOMAIN OF RGS9, THE SUBUNIT OF PHOSPHODIESTERASE AND THE GT/I1 CHIMERA SUBUNIT [(RGS9)-(PDEGAMMA)- (GT/I1)-(GDP)- (ALF4-)-(MG2+)]
1iap CRYSTAL STRUCTURE OF THE P115RHOGEF RGRGS DOMAIN