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(-) Description

Title :  CRYSTAL STRUCTURE OF P115RHOGEF RGS DOMAIN IN COMPLEX WITH G ALPHA 13
 
Authors :  M. Kukimoto-Niino, C. Mishima, M. Shirouzu, T. Kozasa, S. Yokoyama
Date :  30 Nov 09  (Deposition) - 29 Dec 10  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Signal Transduction, Protein Complex, Gtp-Binding, Membrane, Transducer, Lipoprotein, Nucleotide-Binding, Palmitate, Phosphoprotein, Gtpase Activation, Guanine-Nucleotide Releasing Factor, Signaling Protein-Membrane Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Hajicek, M. Kukimoto-Niino, C. Mishima-Tsumagari, C. R. Chow, M. Shirouzu, T. Terada, M. Patel, S. Yokoyama, T. Kozasa
Identification Of Critical Residues In G(Alpha)13 For Stimulation Of P115Rhogef Activity And The Structure Of The G(Alpha)13-P115Rhogef Regulator Of G Protein Signaling Homology (Rh) Domain Complex.
J. Biol. Chem. V. 286 20625 2011
PubMed-ID: 21507947  |  Reference-DOI: 10.1074/JBC.M110.201392

(-) Compounds

Molecule 1 - GUANINE NUCLEOTIDE-BINDING PROTEIN G(K) SUBUNIT ALPHA, GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT ALPHA-13
    ChainsA, C
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPE060908-01
    Expression System StrainSF9
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentUNP RESIDUES 1-28 (G ALPHA I), UNP RESIDUES 47-377 (G ALPHA 13)
    GeneGNA13, GNA-13
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    Other DetailsONE FUSED PROTEIN IS MADE OF RESIDUES 1-28 OF G ALPHA I, LINKER, AND RESIDUES 47-377 OF G ALPHA 13
    SynonymG-PROTEIN SUBUNIT ALPHA-13, G ALPHA-13
 
Molecule 2 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 1
    ChainsB, D
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPE080111-02
    Expression System StrainSF9
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentN-TERMINAL RGS HOMOLOGY DOMAIN
    GeneARHGEF1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym115 KDA GUANINE NUCLEOTIDE EXCHANGE FACTOR, P115-RHOGEF, P115RHOGEF, SUB1.5

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ALF2Ligand/IonTETRAFLUOROALUMINATE ION
2GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ALF1Ligand/IonTETRAFLUOROALUMINATE ION
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ALF1Ligand/IonTETRAFLUOROALUMINATE ION
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:62 , THR A:203 , GDP A:401 , HOH A:408 , HOH A:409 , ALF A:601BINDING SITE FOR RESIDUE MG A 501
2AC2SOFTWAREGLU A:58 , SER A:59 , GLY A:60 , LYS A:61 , SER A:62 , THR A:63 , SER A:173 , LEU A:197 , LEU A:198 , ARG A:200 , ASN A:291 , LYS A:292 , ASP A:294 , LEU A:295 , THR A:348 , ALA A:349 , ILE A:350 , HOH A:381 , HOH A:408 , MG A:501 , ALF A:601BINDING SITE FOR RESIDUE GDP A 401
3AC3SOFTWAREGLY A:57 , GLU A:58 , LYS A:61 , ARG A:200 , PRO A:202 , THR A:203 , VAL A:223 , GLY A:224 , GLY A:225 , GLN A:226 , GDP A:401 , HOH A:408 , HOH A:409 , MG A:501BINDING SITE FOR RESIDUE ALF A 601
4AC4SOFTWAREHOH C:1 , SER C:62 , THR C:203 , ASP C:222 , HOH C:388 , GDP C:402 , ALF C:602BINDING SITE FOR RESIDUE MG C 502
5AC5SOFTWAREHOH C:1 , GLU C:58 , SER C:59 , GLY C:60 , LYS C:61 , SER C:62 , THR C:63 , SER C:173 , LEU C:197 , LEU C:198 , ARG C:200 , ASN C:291 , LYS C:292 , ASP C:294 , LEU C:295 , THR C:348 , ALA C:349 , ILE C:350 , MG C:502 , ALF C:602BINDING SITE FOR RESIDUE GDP C 402
6AC6SOFTWAREHOH C:1 , GLY C:57 , GLU C:58 , LYS C:61 , ARG C:200 , PRO C:202 , THR C:203 , VAL C:223 , GLY C:224 , GLY C:225 , GLN C:226 , HOH C:388 , GDP C:402 , MG C:502BINDING SITE FOR RESIDUE ALF C 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3AB3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3AB3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1CancerSNPVAR_ARHG1_HUMAN_CCDS12590_1_01 *M165MARHG1_HUMANDisease (Colorectal cancer)  ---B/DV165M
2UniProtVAR_035969M165VARHG1_HUMANUnclassified  ---B/DM165V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1CancerSNPVAR_ARHG1_HUMAN_CCDS12590_1_01 *M165MARHG1_HUMANDisease (Colorectal cancer)  ---BV165M
2UniProtVAR_035969M165VARHG1_HUMANUnclassified  ---BM165V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1CancerSNPVAR_ARHG1_HUMAN_CCDS12590_1_01 *M165MARHG1_HUMANDisease (Colorectal cancer)  ---DV165M
2UniProtVAR_035969M165VARHG1_HUMANUnclassified  ---DM165V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3AB3)

(-) Exons   (7, 14)

Asymmetric Unit (7, 14)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003545321bENSE00001053104chr19:42387267-4238735690ARHG1_HUMAN-00--
1.3ENST000003545323ENSE00002160017chr19:42392135-4239217743ARHG1_HUMAN1-880--
1.4ENST000003545324ENSE00001796026chr19:42392263-4239234987ARHG1_HUMAN9-37292B:22-34
D:22-32
13
11
1.5ENST000003545325ENSE00001629400chr19:42392823-42392936114ARHG1_HUMAN38-75382B:46-75
D:46-75
30
30
1.6ENST000003545326ENSE00001605951chr19:42396096-4239619499ARHG1_HUMAN76-108332B:76-108 (gaps)
D:76-108 (gaps)
33
33
1.7ENST000003545327ENSE00001614868chr19:42396402-4239644443ARHG1_HUMAN109-123152B:109-121
D:109-115
13
7
1.8ENST000003545328ENSE00001706685chr19:42396674-42396920247ARHG1_HUMAN123-205832B:134-205
D:138-205 (gaps)
72
68
1.9ENST000003545329ENSE00001771138chr19:42397345-4239737430ARHG1_HUMAN205-215112B:205-215
D:205-215
11
11
1.10ENST0000035453210ENSE00001613938chr19:42398280-42398379100ARHG1_HUMAN215-248342B:215-233
D:215-233
19
19
1.11ENST0000035453211ENSE00001731644chr19:42398524-4239862097ARHG1_HUMAN249-281330--
1.12ENST0000035453212ENSE00001712166chr19:42398699-4239873436ARHG1_HUMAN281-293130--
1.13ENST0000035453213ENSE00001682337chr19:42399422-42399559138ARHG1_HUMAN293-339470--
1.14aENST0000035453214aENSE00000492791chr19:42400450-42400555106ARHG1_HUMAN339-374360--
1.15dENST0000035453215dENSE00000708622chr19:42402591-42402736146ARHG1_HUMAN374-423500--
1.16ENST0000035453216ENSE00000708620chr19:42406037-42406183147ARHG1_HUMAN423-472500--
1.17ENST0000035453217ENSE00000708617chr19:42406424-4240650683ARHG1_HUMAN472-499280--
1.18ENST0000035453218ENSE00000708615chr19:42406683-42406808126ARHG1_HUMAN500-541420--
1.19ENST0000035453219ENSE00000708613chr19:42406934-42407048115ARHG1_HUMAN542-580390--
1.20ENST0000035453220ENSE00000708611chr19:42407457-42407557101ARHG1_HUMAN580-613340--
1.22ENST0000035453222ENSE00000708609chr19:42407859-4240793678ARHG1_HUMAN614-639260--
1.23ENST0000035453223ENSE00000708607chr19:42408187-4240826276ARHG1_HUMAN640-665260--
1.24ENST0000035453224ENSE00000708605chr19:42408368-42408535168ARHG1_HUMAN665-721570--
1.25ENST0000035453225ENSE00000708603chr19:42409101-4240918888ARHG1_HUMAN721-750300--
1.26ENST0000035453226ENSE00000708602chr19:42409327-4240941387ARHG1_HUMAN750-779300--
1.27ENST0000035453227ENSE00000708601chr19:42409912-4240997968ARHG1_HUMAN779-802240--
1.28ENST0000035453228ENSE00000708600chr19:42410091-4241017787ARHG1_HUMAN802-831300--
1.29ENST0000035453229ENSE00000708599chr19:42410609-42410772164ARHG1_HUMAN831-885550--
1.30ENST0000035453230ENSE00001660749chr19:42410855-42410955101ARHG1_HUMAN886-912270--
1.31ENST0000035453231ENSE00001691041chr19:42411257-42411597341ARHG1_HUMAN-00--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:322
 aligned with GNA13_MOUSE | P27601 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:326
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366      
          GNA13_MOUSE    47 RLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 372
               SCOP domains d3ab3a1 A:47-75,A:202-372    d3ab3a2 A:76-201 Transducin (alpha subunit), insertion domain                                                                 d3ab3a1 A:47-75,A:202-372 Transducin (alpha subunit)                                                                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhhhh.......eeeeeee..eeeeeee...hhhhhhhhhhhh....eeeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh....----..eeee....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ab3 A  47 RLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD----PLYHHFTTAINTENIRLVFRDVKDTILHDNLK 372
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336    |  346       356       366      
                                                                                                                                                                                                                                                                                                                           336  341                               

Chain B from PDB  Type:PROTEIN  Length:182
 aligned with ARHG1_HUMAN | Q92888 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:212
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
          ARHG1_HUMAN    22 SIIGAEDEDFENELETNSEEQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
               SCOP domains d3ab3b_ B: au           tomated matches                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............-----------..hhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh-------...hhhhhhhh.............hhhhh------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4        Exon 1.5  PDB: B:46-75 UniProt: 38-75 Exon 1.6  PDB: B:76-108 (gaps)   Exon 1.7       -------------------------------------------------------------------------------------------Exon 1.10           Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------Exon 1.8  PDB: B:134-205 UniProt: 123-205 [INCOMPLETE]                             ---------------------------- Transcript 1 (2)
           Transcript 1 (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9   ------------------ Transcript 1 (3)
                 3ab3 B  22 SIIGAEDEDFENE-----------FQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLG-------KKAFLDFYHSFLEKTAVLRVPVPPNVAFE------------VQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
                                    31  |      -    |   51        61        71        81   |     - |     101       111       121         -  |    141       151       161       171       181       191       201       211       221       231  
                                       34          46                                     85      93                         121          134                                                                                                   

Chain C from PDB  Type:PROTEIN  Length:318
 aligned with GNA13_MOUSE | P27601 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:322
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366  
          GNA13_MOUSE    47 RLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 368
               SCOP domains d3ab3c1 C:47-75,C:202-368    d3ab3c2 C:76-201 Transducin (alpha subunit), insertion domain                                                                 d3ab3c1 C:47-75,C:202-368 Transducin (alpha subunit)                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhhhh......eeeeeeee..eeeeeeee..hhhhhhhhhhhh....eeeeeee..............hhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..----..eeee....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ab3 C  47 RLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD----PLYHHFTTAINTENIRLVFRDVKDTILH 368
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336    |  346       356       366  
                                                                                                                                                                                                                                                                                                                           336  341                           

Chain D from PDB  Type:PROTEIN  Length:165
 aligned with ARHG1_HUMAN | Q92888 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:212
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
          ARHG1_HUMAN    22 SIIGAEDEDFENELETNSEEQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.-------------..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhh...........----------------------hhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhh------hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4        Exon 1.5  PDB: D:46-75 UniProt: 38-75 Exon 1.6  PDB: D:76-108 (gaps)   Exon 1.7       -------------------------------------------------------------------------------------------Exon 1.10           Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------Exon 1.8  PDB: D:138-205 (gaps) UniProt: 123-205 [INCOMPLETE]                      ---------------------------- Transcript 1 (2)
           Transcript 1 (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9   ------------------ Transcript 1 (3)
                 3ab3 D  22 SIIGAEDEDFE-------------FQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLG------AKKAFLDFYHSFLEKTAVLRVPVP----------------------FVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLE------RASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRT 233
                                    31|        -    |   51        61        71        81   |     -|      101       111   |     -         -      |141       151       161       171    |    - |     191       201       211       221       231  
                                     32            46                                     85     92                    115                    138                                   176    183                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 5)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3AB3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3AB3)

(-) Gene Ontology  (63, 85)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (GNA13_MOUSE | P27601)
molecular function
    GO:0031752    D5 dopamine receptor binding    Interacting selectively and non-covalently with a D5 dopamine receptor.
    GO:0031683    G-protein beta/gamma-subunit complex binding    Interacting selectively and non-covalently with a complex of G-protein beta/gamma subunits.
    GO:0001664    G-protein coupled receptor binding    Interacting selectively and non-covalently with a G-protein coupled receptor.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0019001    guanyl nucleotide binding    Interacting selectively and non-covalently with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0031702    type 1 angiotensin receptor binding    Interacting selectively and non-covalently with a type 1 angiotensin receptor.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007266    Rho protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state.
    GO:0031584    activation of phospholipase D activity    Any process that initiates the activity of inactive phospholipase D.
    GO:0007189    adenylate cyclase-activating G-protein coupled receptor signaling pathway    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds through activation of adenylyl cyclase activity and a subsequent increase in the concentration of cyclic AMP (cAMP).
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0001569    branching involved in blood vessel morphogenesis    The process of coordinated growth and sprouting of blood vessels giving rise to the organized vascular system.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0007204    positive regulation of cytosolic calcium ion concentration    Any process that increases the concentration of calcium ions in the cytosol.
    GO:0030334    regulation of cell migration    Any process that modulates the frequency, rate or extent of cell migration.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
cellular component
    GO:0031526    brush border membrane    The portion of the plasma membrane surrounding the brush border.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0005834    heterotrimeric G-protein complex    Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein.
    GO:0042470    melanosome    A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,D   (ARHG1_HUMAN | Q92888)
molecular function
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0005089    Rho guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007266    Rho protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state.
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0050771    negative regulation of axonogenesis    Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0035023    regulation of Rho protein signal transduction    Any process that modulates the frequency, rate or extent of Rho protein signal transduction.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARHG1_HUMAN | Q928881iap 1shz 3odo 3odw 3odx 3p6a
        GNA13_MOUSE | P276011shz 1zcb 3cx6 3cx7 3cx8

(-) Related Entries Specified in the PDB File

1zcb G ALPHA 13 IN COMPLEX WITH GDP