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1SHZ
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (89 KB)
Biol.Unit 3 (175 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE P115RHOGEF RGRGS DOMAIN IN A COMPLEX WITH GALPHA(13):GALPHA(I1) CHIMERA
Authors
:
Z. Chen, W. D. Singer, P. C. Sternweis, S. R. Sprang
Date
:
26 Feb 04 (Deposition) - 18 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,C,D,F
Biol. Unit 1: A,C (1x)
Biol. Unit 2: D,F (1x)
Biol. Unit 3: A,C,D,F (1x)
Keywords
:
Signal Transduction, Protein Complex, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Chen, W. D. Singer, P. C. Sternweis, S. R. Sprang
Structure Of The P115Rhogef Rgrgs Domain-Galpha13/I1 Chimera Complex Suggests Convergent Evolution Of A Gtpase Activator.
Nat. Struct. Mol. Biol. V. 12 191 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:62 , THR A:203 , ALF A:378 , GDP A:475
BINDING SITE FOR RESIDUE MG A 377
2
AC2
SOFTWARE
SER D:62 , THR D:203 , ALF D:378 , GDP D:476 , HOH D:502
BINDING SITE FOR RESIDUE MG D 377
3
AC3
SOFTWARE
GLY A:57 , GLU A:58 , LYS A:61 , ARG A:200 , THR A:203 , VAL A:223 , GLY A:225 , GLN A:226 , MG A:377 , GDP A:475 , HOH A:543
BINDING SITE FOR RESIDUE ALF A 378
4
AC4
SOFTWARE
GLY D:57 , GLU D:58 , LYS D:61 , ARG D:200 , PRO D:202 , THR D:203 , GLY D:225 , GLN D:226 , MG D:377 , GDP D:476 , HOH D:502 , HOH D:550
BINDING SITE FOR RESIDUE ALF D 378
5
AC5
SOFTWARE
GLU A:58 , SER A:59 , GLY A:60 , LYS A:61 , SER A:62 , THR A:63 , LEU A:197 , LEU A:198 , ARG A:200 , ASN A:291 , LYS A:292 , ASP A:294 , LEU A:295 , ALA A:348 , THR A:349 , MG A:377 , ALF A:378
BINDING SITE FOR RESIDUE GDP A 475
6
AC6
SOFTWARE
GLU D:58 , SER D:59 , GLY D:60 , LYS D:61 , SER D:62 , THR D:63 , SER D:173 , LEU D:197 , LEU D:198 , ARG D:200 , ASN D:291 , LYS D:292 , ASP D:294 , CYS D:347 , ALA D:348 , THR D:349 , MG D:377 , ALF D:378
BINDING SITE FOR RESIDUE GDP D 476
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_ARHG1_HUMAN_CCDS12590_1_01 (V165M, chain C/F, )
2: VAR_035969 (M165V, chain C/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
CancerSNP
VAR_ARHG1_HUMAN_CCDS12590_1_01
*
M
165
M
ARHG1_HUMAN
Disease (Colorectal cancer)
---
C/F
V
165
M
2
UniProt
VAR_035969
M
165
V
ARHG1_HUMAN
Unclassified
---
C/F
M
165
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(7, 14)
Info
All Exons
Exon 1.4 (C:16-37 | F:17-34)
Exon 1.5 (C:44-75 | F:44-75)
Exon 1.6 (C:76-108 (gaps) | F:76-108 (gaps))
Exon 1.7 (C:109-122 | F:109-122)
Exon 1.8 (C:133-205 | F:134-205 (gaps))
Exon 1.9 (C:205-215 | F:205-215)
Exon 1.10 (C:215-233 | F:215-233)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000354532
1b
ENSE00001053104
chr19:
42387267-42387356
90
ARHG1_HUMAN
-
0
0
-
-
1.3
ENST00000354532
3
ENSE00002160017
chr19:
42392135-42392177
43
ARHG1_HUMAN
1-8
8
0
-
-
1.4
ENST00000354532
4
ENSE00001796026
chr19:
42392263-42392349
87
ARHG1_HUMAN
9-37
29
2
C:16-37
F:17-34
22
18
1.5
ENST00000354532
5
ENSE00001629400
chr19:
42392823-42392936
114
ARHG1_HUMAN
38-75
38
2
C:44-75
F:44-75
32
32
1.6
ENST00000354532
6
ENSE00001605951
chr19:
42396096-42396194
99
ARHG1_HUMAN
76-108
33
2
C:76-108 (gaps)
F:76-108 (gaps)
33
33
1.7
ENST00000354532
7
ENSE00001614868
chr19:
42396402-42396444
43
ARHG1_HUMAN
109-123
15
2
C:109-122
F:109-122
14
14
1.8
ENST00000354532
8
ENSE00001706685
chr19:
42396674-42396920
247
ARHG1_HUMAN
123-205
83
2
C:133-205
F:134-205 (gaps)
73
72
1.9
ENST00000354532
9
ENSE00001771138
chr19:
42397345-42397374
30
ARHG1_HUMAN
205-215
11
2
C:205-215
F:205-215
11
11
1.10
ENST00000354532
10
ENSE00001613938
chr19:
42398280-42398379
100
ARHG1_HUMAN
215-248
34
2
C:215-233
F:215-233
19
19
1.11
ENST00000354532
11
ENSE00001731644
chr19:
42398524-42398620
97
ARHG1_HUMAN
249-281
33
0
-
-
1.12
ENST00000354532
12
ENSE00001712166
chr19:
42398699-42398734
36
ARHG1_HUMAN
281-293
13
0
-
-
1.13
ENST00000354532
13
ENSE00001682337
chr19:
42399422-42399559
138
ARHG1_HUMAN
293-339
47
0
-
-
1.14a
ENST00000354532
14a
ENSE00000492791
chr19:
42400450-42400555
106
ARHG1_HUMAN
339-374
36
0
-
-
1.15d
ENST00000354532
15d
ENSE00000708622
chr19:
42402591-42402736
146
ARHG1_HUMAN
374-423
50
0
-
-
1.16
ENST00000354532
16
ENSE00000708620
chr19:
42406037-42406183
147
ARHG1_HUMAN
423-472
50
0
-
-
1.17
ENST00000354532
17
ENSE00000708617
chr19:
42406424-42406506
83
ARHG1_HUMAN
472-499
28
0
-
-
1.18
ENST00000354532
18
ENSE00000708615
chr19:
42406683-42406808
126
ARHG1_HUMAN
500-541
42
0
-
-
1.19
ENST00000354532
19
ENSE00000708613
chr19:
42406934-42407048
115
ARHG1_HUMAN
542-580
39
0
-
-
1.20
ENST00000354532
20
ENSE00000708611
chr19:
42407457-42407557
101
ARHG1_HUMAN
580-613
34
0
-
-
1.22
ENST00000354532
22
ENSE00000708609
chr19:
42407859-42407936
78
ARHG1_HUMAN
614-639
26
0
-
-
1.23
ENST00000354532
23
ENSE00000708607
chr19:
42408187-42408262
76
ARHG1_HUMAN
640-665
26
0
-
-
1.24
ENST00000354532
24
ENSE00000708605
chr19:
42408368-42408535
168
ARHG1_HUMAN
665-721
57
0
-
-
1.25
ENST00000354532
25
ENSE00000708603
chr19:
42409101-42409188
88
ARHG1_HUMAN
721-750
30
0
-
-
1.26
ENST00000354532
26
ENSE00000708602
chr19:
42409327-42409413
87
ARHG1_HUMAN
750-779
30
0
-
-
1.27
ENST00000354532
27
ENSE00000708601
chr19:
42409912-42409979
68
ARHG1_HUMAN
779-802
24
0
-
-
1.28
ENST00000354532
28
ENSE00000708600
chr19:
42410091-42410177
87
ARHG1_HUMAN
802-831
30
0
-
-
1.29
ENST00000354532
29
ENSE00000708599
chr19:
42410609-42410772
164
ARHG1_HUMAN
831-885
55
0
-
-
1.30
ENST00000354532
30
ENSE00001660749
chr19:
42410855-42410955
101
ARHG1_HUMAN
886-912
27
0
-
-
1.31
ENST00000354532
31
ENSE00001691041
chr19:
42411257-42411597
341
ARHG1_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1shzc_ (C:)
1b: SCOP_d1shzf_ (F:)
2a: SCOP_d1shza1 (A:76-200)
2b: SCOP_d1shzd1 (D:76-200)
3a: SCOP_d1shza2 (A:46-75,A:201-371)
3b: SCOP_d1shzd2 (D:46-75,D:201-371)
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
automated matches
(25)
Protein domain
:
automated matches
(25)
Human (Homo sapiens) [TaxId: 9606]
(24)
1a
d1shzc_
C:
1b
d1shzf_
F:
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(19)
2a
d1shza1
A:76-200
2b
d1shzd1
D:76-200
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
3a
d1shza2
A:46-75,A:201-371
3b
d1shzd2
D:46-75,D:201-371
[
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]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1shzD01 (D:45-76,D:203-371)
1b: CATH_1shzA01 (A:46-76,A:203-371)
2a: CATH_1shzA02 (A:77-202)
2b: CATH_1shzD02 (D:77-202)
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Architectures
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse, norway rat (Mus musculus, rattus norvegicus)
(1)
1a
1shzD01
D:45-76,D:203-371
1b
1shzA01
A:46-76,A:203-371
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
House mouse, norway rat (Mus musculus, rattus norvegicus)
(1)
2a
1shzA02
A:77-202
2b
1shzD02
D:77-202
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_G_alpha_1shzD01 (D:49-299)
1b: PFAM_G_alpha_1shzD02 (D:49-299)
2a: PFAM_RGS_like_1shzF01 (F:44-232)
2b: PFAM_RGS_like_1shzF02 (F:44-232)
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Organisms
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Mus musculus (Mouse)
(5)
1a
G-alpha-1shzD01
D:49-299
1b
G-alpha-1shzD02
D:49-299
Clan
:
RGS
(17)
Family
:
RGS-like
(1)
Homo sapiens (Human)
(1)
2a
RGS-like-1shzF01
F:44-232
2b
RGS-like-1shzF02
F:44-232
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