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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SINDBIS VIRUS E2-E1 HETERODIMER AT LOW PH
 
Authors :  L. Li, J. Jose, Y. Xiang, R. J. Kuhn, M. G. Rossmann
Date :  03 May 10  (Deposition) - 24 Nov 10  (Release) - 12 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.29
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Beta Barrels, Ig-Like Folds, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Li, J. Jose, Y. Xiang, R. J. Kuhn, M. G. Rossmann
Structural Changes Of Envelope Proteins During Alphavirus Fusion.
Nature V. 468 705 2010
PubMed-ID: 21124457  |  Reference-DOI: 10.1038/NATURE09546

(-) Compounds

Molecule 1 - STRUCTURAL POLYPROTEIN
    Chains: A, B, C, D, E, F
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Plasmid: PMT/BIP/V5-HIS
    Expression System Strain: S2 CELLS
    Expression System Taxid: 7215
    Organism Common: SINV
    Organism Scientific: SINDBIS VIRUS
    Organism Taxid: 11034
    Strain: TOTO64
    Synonym: P130, CAPSID PROTEIN, COAT PROTEIN, C, P62, E3/E2, E3 PROTEIN, SPIKE GLYCOPROTEIN E3, E2 ENVELOPE GLYCOPROTEIN, SPIKE GLYCOPROTEIN E2, 6K PROTEIN, E1 ENVELOPE GLYCOPROTEIN, SPIKE GLYCOPROTEIN E1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 110)

Asymmetric Unit (4, 110)
No.NameCountTypeFull Name
1BMA12Ligand/IonBETA-D-MANNOSE
2MAN14Ligand/IonALPHA-D-MANNOSE
3MSE60Mod. Amino AcidSELENOMETHIONINE
4NAG24Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (4, 55)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2MAN7Ligand/IonALPHA-D-MANNOSE
3MSE30Mod. Amino AcidSELENOMETHIONINE
4NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (4, 55)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2MAN7Ligand/IonALPHA-D-MANNOSE
3MSE30Mod. Amino AcidSELENOMETHIONINE
4NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (50, 50)

Asymmetric Unit (50, 50)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:282 , SER A:284 , ASN A:318 , NAG A:752BINDING SITE FOR RESIDUE NAG A 751
02AC2SOFTWARENAG A:751 , BMA A:753BINDING SITE FOR RESIDUE NAG A 752
03AC3SOFTWARENAG A:752 , MAN A:754BINDING SITE FOR RESIDUE BMA A 753
04AC4SOFTWAREBMA A:753 , THR C:7 , LEU C:8 , THR C:9 , SER C:10 , GLN C:55 , SER C:56 , ARG C:65BINDING SITE FOR RESIDUE MAN A 754
05AC5SOFTWAREASN A:605 , NAG A:762BINDING SITE FOR RESIDUE NAG A 761
06AC6SOFTWARENAG A:761 , BMA A:763BINDING SITE FOR RESIDUE NAG A 762
07AC7SOFTWARENAG A:762 , MAN A:764 , MAN A:765BINDING SITE FOR RESIDUE BMA A 763
08AC8SOFTWAREBMA A:763 , BMA C:763 , MAN C:764BINDING SITE FOR RESIDUE MAN A 764
09AC9SOFTWAREBMA A:763BINDING SITE FOR RESIDUE MAN A 765
10BC1SOFTWAREHIS B:282 , ASN B:318 , NAG B:752BINDING SITE FOR RESIDUE NAG B 751
11BC2SOFTWARELYS A:556 , NAG B:751 , BMA B:753 , MAN B:754BINDING SITE FOR RESIDUE NAG B 752
12BC3SOFTWARENAG B:752 , MAN B:754BINDING SITE FOR RESIDUE BMA B 753
13BC4SOFTWARETHR A:7 , SER A:56 , GLY A:57 , ARG A:65 , NAG B:752 , BMA B:753BINDING SITE FOR RESIDUE MAN B 754
14BC5SOFTWARELYS B:131 , ASN B:605 , NAG B:762BINDING SITE FOR RESIDUE NAG B 761
15BC6SOFTWARENAG B:761 , BMA B:763 , MAN B:764BINDING SITE FOR RESIDUE NAG B 762
16BC7SOFTWARENAG B:762 , MAN B:764BINDING SITE FOR RESIDUE BMA B 763
17BC8SOFTWARENAG B:762 , BMA B:763BINDING SITE FOR RESIDUE MAN B 764
18BC9SOFTWAREHIS C:282 , ASN C:318 , NAG C:752BINDING SITE FOR RESIDUE NAG C 751
19CC1SOFTWARENAG C:751 , BMA C:753BINDING SITE FOR RESIDUE NAG C 752
20CC2SOFTWARENAG C:752 , MAN C:754BINDING SITE FOR RESIDUE BMA C 753
21CC3SOFTWARETHR B:7 , SER B:10 , SER B:56 , GLY B:57 , ARG B:65 , BMA C:753BINDING SITE FOR RESIDUE MAN C 754
22CC4SOFTWARELYS C:131 , ASN C:605 , NAG C:762BINDING SITE FOR RESIDUE NAG C 761
23CC5SOFTWARENAG C:761 , BMA C:763BINDING SITE FOR RESIDUE NAG C 762
24CC6SOFTWAREMAN A:764 , NAG C:762 , MAN C:764BINDING SITE FOR RESIDUE BMA C 763
25CC7SOFTWAREMAN A:764 , BMA C:763BINDING SITE FOR RESIDUE MAN C 764
26CC8SOFTWAREHIS D:282 , SER D:284 , ASN D:318 , NAG D:752BINDING SITE FOR RESIDUE NAG D 751
27CC9SOFTWARENAG D:751 , BMA D:753 , MAN D:754BINDING SITE FOR RESIDUE NAG D 752
28DC1SOFTWARENAG D:752 , MAN D:754BINDING SITE FOR RESIDUE BMA D 753
29DC2SOFTWARENAG D:752 , BMA D:753 , THR F:7 , SER F:10 , SER F:56 , GLY F:57 , ARG F:65BINDING SITE FOR RESIDUE MAN D 754
30DC3SOFTWARELYS D:131 , ASN D:605 , NAG D:762BINDING SITE FOR RESIDUE NAG D 761
31DC4SOFTWARENAG D:761 , BMA D:763BINDING SITE FOR RESIDUE NAG D 762
32DC5SOFTWARENAG D:762 , MAN E:765BINDING SITE FOR RESIDUE BMA D 763
33DC6SOFTWAREHIS E:282 , ASN E:318 , NAG E:752BINDING SITE FOR RESIDUE NAG E 751
34DC7SOFTWARENAG E:751 , BMA E:753BINDING SITE FOR RESIDUE NAG E 752
35DC8SOFTWARESER D:56 , NAG E:752 , MAN E:754BINDING SITE FOR RESIDUE BMA E 753
36DC9SOFTWARETHR D:7 , LEU D:8 , THR D:9 , SER D:10 , ARG D:65 , VAL D:75 , BMA E:753BINDING SITE FOR RESIDUE MAN E 754
37EC1SOFTWARELYS E:131 , ASN E:605 , NAG E:762BINDING SITE FOR RESIDUE NAG E 761
38EC2SOFTWARENAG E:761 , BMA E:763BINDING SITE FOR RESIDUE NAG E 762
39EC3SOFTWARENAG E:762 , MAN E:764 , MAN E:765 , MAN F:765BINDING SITE FOR RESIDUE BMA E 763
40EC4SOFTWAREBMA E:763 , TRP F:310 , MAN F:765BINDING SITE FOR RESIDUE MAN E 764
41EC5SOFTWAREBMA D:763 , BMA E:763BINDING SITE FOR RESIDUE MAN E 765
42EC6SOFTWAREHIS F:282 , SER F:284 , ASN F:318 , NAG F:752BINDING SITE FOR RESIDUE NAG F 751
43EC7SOFTWARENAG F:751 , BMA F:753 , MAN F:754BINDING SITE FOR RESIDUE NAG F 752
44EC8SOFTWARENAG F:752 , MAN F:754BINDING SITE FOR RESIDUE BMA F 753
45EC9SOFTWARETHR E:7 , LEU E:8 , THR E:9 , SER E:10 , GLN E:55 , SER E:56 , GLY E:57 , ARG E:65 , NAG F:752 , BMA F:753BINDING SITE FOR RESIDUE MAN F 754
46FC1SOFTWARELYS F:131 , ASN F:605 , NAG F:762 , MAN F:765BINDING SITE FOR RESIDUE NAG F 761
47FC2SOFTWARENAG F:761 , BMA F:763 , MAN F:765BINDING SITE FOR RESIDUE NAG F 762
48FC3SOFTWARENAG F:762 , MAN F:764 , MAN F:765BINDING SITE FOR RESIDUE BMA F 763
49FC4SOFTWARETRP D:310 , BMA F:763BINDING SITE FOR RESIDUE MAN F 764
50FC5SOFTWAREBMA E:763 , MAN E:764 , NAG F:761 , NAG F:762 , BMA F:763BINDING SITE FOR RESIDUE MAN F 765

(-) SS Bonds  (72, 72)

Asymmetric Unit
No.Residues
1A:16 -A:124
2A:19 -A:25
3A:91 -A:105
4A:152 -A:266
5A:409 -A:474
6A:422 -A:454
7A:423 -A:456
8A:428 -A:438
9A:619 -A:631
10A:661 -A:736
11A:666 -A:740
12A:688 -A:730
13B:16 -B:124
14B:19 -B:25
15B:91 -B:105
16B:152 -B:266
17B:409 -B:474
18B:422 -B:454
19B:423 -B:456
20B:428 -B:438
21B:619 -B:631
22B:661 -B:736
23B:666 -B:740
24B:688 -B:730
25C:16 -C:124
26C:19 -C:25
27C:91 -C:105
28C:152 -C:266
29C:409 -C:474
30C:422 -C:454
31C:423 -C:456
32C:428 -C:438
33C:619 -C:631
34C:661 -C:736
35C:666 -C:740
36C:688 -C:730
37D:16 -D:124
38D:19 -D:25
39D:91 -D:105
40D:152 -D:266
41D:409 -D:474
42D:422 -D:454
43D:423 -D:456
44D:428 -D:438
45D:619 -D:631
46D:661 -D:736
47D:666 -D:740
48D:688 -D:730
49E:16 -E:124
50E:19 -E:25
51E:91 -E:105
52E:152 -E:266
53E:409 -E:474
54E:422 -E:454
55E:423 -E:456
56E:428 -E:438
57E:619 -E:631
58E:661 -E:736
59E:666 -E:740
60E:688 -E:730
61F:16 -F:124
62F:19 -F:25
63F:91 -F:105
64F:152 -F:266
65F:409 -F:474
66F:422 -F:454
67F:423 -F:456
68F:428 -F:438
69F:619 -F:631
70F:661 -F:736
71F:666 -F:740
72F:688 -F:730

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MUU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 26)

Asymmetric Unit (5, 26)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_SINDV_001 *D333GPOLS_SINDV  ---  ---C/DD5G
2UniProtVAR_POLS_SINDV_002 *V351EPOLS_SINDV  ---  ---A/B/C/D/E/FV23E
3UniProtVAR_POLS_SINDV_003 *K398EPOLS_SINDV  ---  ---A/B/C/D/E/FK70E
4UniProtVAR_POLS_SINDV_004 *S442RPOLS_SINDV  ---  ---A/B/C/D/E/FS114R
5UniProtVAR_POLS_SINDV_007 *D919VPOLS_SINDV  ---  ---A/B/C/D/E/FD473V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (5, 13)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_SINDV_001 *D333GPOLS_SINDV  ---  ---CD5G
2UniProtVAR_POLS_SINDV_002 *V351EPOLS_SINDV  ---  ---A/B/CV23E
3UniProtVAR_POLS_SINDV_003 *K398EPOLS_SINDV  ---  ---A/B/CK70E
4UniProtVAR_POLS_SINDV_004 *S442RPOLS_SINDV  ---  ---A/B/CS114R
5UniProtVAR_POLS_SINDV_007 *D919VPOLS_SINDV  ---  ---A/B/CD473V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (5, 13)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_SINDV_001 *D333GPOLS_SINDV  ---  ---DD5G
2UniProtVAR_POLS_SINDV_002 *V351EPOLS_SINDV  ---  ---D/E/FV23E
3UniProtVAR_POLS_SINDV_003 *K398EPOLS_SINDV  ---  ---D/E/FK70E
4UniProtVAR_POLS_SINDV_004 *S442RPOLS_SINDV  ---  ---D/E/FS114R
5UniProtVAR_POLS_SINDV_007 *D919VPOLS_SINDV  ---  ---D/E/FD473V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MUU)

(-) Exons   (0, 0)

(no "Exon" information available for 3MUU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:623
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:853
                                   343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183   
          POLS_SINDV    334 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYMSLKQDHTVKEGTMDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRLKETTAGYITMHRPRPHAYTSYLEESSGKVYAKPPSGKNITYECKCGDYKTGTVSTRTEITGCTAIKQCVAYKSDQTKWVFNSPDLIRHDDHTAQGKLHLPFKLIPSTCMVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQESAPGDPHGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVAVLCACKARRECLTPYALAPNAVIPTSLALLCCVRSANAETFTETMSYLWSNSQPFFWVQLCIPLAAFIVLMRCCSCCLPFLVVAGAYLAKVDAYEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee........eee.....eee......eeeee...ee...........eee...........eee...eeee...eeeeeeee..eeeee......eeeeee....eeeeee.....................eeeeeeee..-------------------------------------------------------------------------------------------------......eeeeeeee......eeeee..eeeeeeeeeeeeeeeeee.........eeeeeee..........eeeee......ee.....-------------------------------------------------------------------------------------------------------------------------------------.eeeeeeeee......eeeee.......eeeeeeeeee..eeeeeeeeee..eeee....ee................eeeeee..................eeeeeeeeee........eeeeeeeeee..eeeeeee..eeeeee.......eee....eeee............eeee....eee................ee.........ee....ee...........ee...hhhhhhhh....hhhhh.....eee....eee.....eeeeeeeee.hhh........eeeeeeeeee........eeeeeeeee.....ee.ee.....ee...ee......eeeeeee.........ee............ Sec.struct. author
                 SAPs(SNPs) -----------------E----------------------------------------------E-------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3muu A    6 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYmSLKQDHTVKEGTmDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDR-------------------------------------------------------------------------------------------------LHLPFKLIPSTCmVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQES-------------------------------------------------------------------------------------------------------------------------------------GGYEHATTVPNVPQIPYKALVERAGYAPLNLEITVmSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHAGYTCKVFGGVYPFmWGGAQCFCDSENSQmSEAYVELSADCASDHAQAIKVHTAAmKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAmKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEmWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGmATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC  740
                                    15        25        35        45        55        65 |      75    |   85        95       105       115       125       135       145       155 |       -         -         -         -         -         -         -         -         -       255       265 |     275       285       295       305       315       325       335       | -         -         -         -         -         -         -         -         -         -         -         -         -         - |     367       377       387      |397       407       417       427       437       447|      457     | 467       477       487 |     497       507       517       527       537       547       557       567       577       587       597    |  607       617       627       637       647       657       667       677       687       697       707       717       727       737   
                                                                                        67-MSE       80-MSE                                                                      157                                                                                               255         267-MSE                                                                     343                                                                                                                                   359                                394-MSE                                               448-MSE        463-MSE                   489-MSE                                                           555-MSE                                        602-MSE                                                                  675-MSE                                                             


Chain B from PDB  Type:PROTEIN  Length:622
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:853
                                   343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183   
          POLS_SINDV    334 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYMSLKQDHTVKEGTMDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRLKETTAGYITMHRPRPHAYTSYLEESSGKVYAKPPSGKNITYECKCGDYKTGTVSTRTEITGCTAIKQCVAYKSDQTKWVFNSPDLIRHDDHTAQGKLHLPFKLIPSTCMVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQESAPGDPHGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVAVLCACKARRECLTPYALAPNAVIPTSLALLCCVRSANAETFTETMSYLWSNSQPFFWVQLCIPLAAFIVLMRCCSCCLPFLVVAGAYLAKVDAYEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee........eee.....eee......eeeee...ee...........eee...........eee...eeee...eeeeeeee..eeeee......eeeeee....eeeeee.....................eeeeeeee..------------------------------------------------------------------------------------------------.......eeeeeeee......eeeee..eeeeeeeeeeeeeeeeee.........eeeeeee..........eeeee......ee...---------------------------------------------------------------------------------------------------------------------------------------.eeeeeeeee......eeeee.......eeeeeeeeee..eeeeeeeeee..eeee....ee................eeeeee..................eeeeeeeeee........eeeeeeeeee..eeeeeee..eeeeee.......eee....eeee............eeee....eee................ee.........ee....ee...........ee...hhhhhhhh....hhhhh.....eee....eee.....eeeeeeeee.hhh........eeeeeeeeee........eeeeeeeee.....ee.ee.....ee...ee......eeeeeee.........ee............ Sec.struct. author
                 SAPs(SNPs) -----------------E----------------------------------------------E-------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3muu B    6 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYmSLKQDHTVKEGTmDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDR------------------------------------------------------------------------------------------------KLHLPFKLIPSTCmVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQ---------------------------------------------------------------------------------------------------------------------------------------GGYEHATTVPNVPQIPYKALVERAGYAPLNLEITVmSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHAGYTCKVFGGVYPFmWGGAQCFCDSENSQmSEAYVELSADCASDHAQAIKVHTAAmKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAmKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEmWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGmATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC  740
                                    15        25        35        45        55        65 |      75    |   85        95       105       115       125       135       145       155 |       -         -         -         -         -         -         -         -         -       255       265 |     275       285       295       305       315       325       335     |   -         -         -         -         -         -         -         -         -         -         -         -         -         - |     367       377       387      |397       407       417       427       437       447|      457     | 467       477       487 |     497       507       517       527       537       547       557       567       577       587       597    |  607       617       627       637       647       657       667       677       687       697       707       717       727       737   
                                                                                        67-MSE       80-MSE                                                                      157                                                                                              254          267-MSE                                                                   341                                                                                                                                     359                                394-MSE                                               448-MSE        463-MSE                   489-MSE                                                           555-MSE                                        602-MSE                                                                  675-MSE                                                             


Chain C from PDB  Type:PROTEIN  Length:622
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:854
                                   342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182    
          POLS_SINDV    333 DFTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYMSLKQDHTVKEGTMDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRLKETTAGYITMHRPRPHAYTSYLEESSGKVYAKPPSGKNITYECKCGDYKTGTVSTRTEITGCTAIKQCVAYKSDQTKWVFNSPDLIRHDDHTAQGKLHLPFKLIPSTCMVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQESAPGDPHGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVAVLCACKARRECLTPYALAPNAVIPTSLALLCCVRSANAETFTETMSYLWSNSQPFFWVQLCIPLAAFIVLMRCCSCCLPFLVVAGAYLAKVDAYEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee........eee.....eee......eeeee...ee...........eee...........eee...eeee...eeeeeeee..eeeee......eeeeee....eeeeee.....................eeeeeeee...------------------------------------------------------------------------------------------------......eeeeeeee......eeeee..eeeeeeeeeeeeeeeeee.........eeeeeee..........eeeee......ee...----------------------------------------------------------------------------------------------------------------------------------------.eeeeeeee.....eeeeee.......eeeeeeeeee..eeeeeeeeee..eeee....ee................eeeeee..................eeeeeeeeee........eeeeeeeeee..eeeeeee..eeeeee........ee....eeee............eeee....eee................ee.........ee....ee...........ee...hhhhhhhh....hhhhh.....eee....eee.....eeeeeeeehhhhh........eeeeeeeeee........eeeeeeeee.....ee.ee.....ee...ee......eeeeeee.........ee............ Sec.struct. author
                 SAPs(SNPs) G-----------------E----------------------------------------------E-------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3muu C    5 DFTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYmSLKQDHTVKEGTmDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRL------------------------------------------------------------------------------------------------LHLPFKLIPSTCmVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQ----------------------------------------------------------------------------------------------------------------------------------------GYEHATTVPNVPQIPYKALVERAGYAPLNLEITVmSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHAGYTCKVFGGVYPFmWGGAQCFCDSENSQmSEAYVELSADCASDHAQAIKVHTAAmKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAmKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEmWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGmATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC  740
                                    14        24        34        44        54        64  |     74     |  84        94       104       114       124       134       144       154   |     -         -         -         -         -         -         -         -         -         -|      264  |    274       284       294       304       314       324       334      |  -         -         -         -         -         -         -         -         -         -         -         -         -         -   |   366       376       386       396       406       416       426       436       446 |     456      |466       476       486  |    496       506       516       526       536       546       556       566       576       586       596     | 606       616       626       636       646       656       666       676       686       696       706       716       726       736    
                                                                                         67-MSE       80-MSE                                                                       158                                                                                              255         267-MSE                                                                   341                                                                                                                                      360                               394-MSE                                               448-MSE        463-MSE                   489-MSE                                                           555-MSE                                        602-MSE                                                                  675-MSE                                                             


Chain D from PDB  Type:PROTEIN  Length:622
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:855
                                   341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181     
          POLS_SINDV    332 DDFTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYMSLKQDHTVKEGTMDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRLKETTAGYITMHRPRPHAYTSYLEESSGKVYAKPPSGKNITYECKCGDYKTGTVSTRTEITGCTAIKQCVAYKSDQTKWVFNSPDLIRHDDHTAQGKLHLPFKLIPSTCMVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQESAPGDPHGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVAVLCACKARRECLTPYALAPNAVIPTSLALLCCVRSANAETFTETMSYLWSNSQPFFWVQLCIPLAAFIVLMRCCSCCLPFLVVAGAYLAKVDAYEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee........eee.....eee......eeeee...ee...........eee...........eee...eeee...eeeeeeee..eeeee......eeeeee....eeeeee.....................eeeeeeee..--------------------------------------------------------------------------------------------------.....eeeeeeee......eeeee..eeeeeeeeeeeeeeeeee.........eeeeeee..........eeeee......ee...---------------------------------------------------------------------------------------------------------------------------------------.eeeeeeeee......eeeee.......eeeeeeeeee..eeeeeeeeee..eeee....ee................eeeeee..................eeeeeeeeee........eeeeeeeeee..eeeeeee..eeeeee.......eee....eeee............eeee....eee................ee.........ee....ee...........ee...hhhhhhhh....hhhhh.....eee....eee.....eeeeeeeee.hhh........eeeeeeeeee........eeeeeeeee.....ee.ee.....ee...ee......eeeeeee.........ee............ Sec.struct. author
                 SAPs(SNPs) -G-----------------E----------------------------------------------E-------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3muu D    4 DDFTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYmSLKQDHTVKEGTmDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDR--------------------------------------------------------------------------------------------------HLPFKLIPSTCmVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQ---------------------------------------------------------------------------------------------------------------------------------------GGYEHATTVPNVPQIPYKALVERAGYAPLNLEITVmSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHAGYTCKVFGGVYPFmWGGAQCFCDSENSQmSEAYVELSADCASDHAQAIKVHTAAmKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAmKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEmWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGmATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC  740
                                    13        23        33        43        53        63   |    73      | 83        93       103       113       123       133       143       153   |     -         -         -         -         -         -         -         -         -         -  |    263   |   273       283       293       303       313       323       333       | -         -         -         -         -         -         -         -         -         -         -         -         -         -   |   365       375       385       395       405       415       425       435       445  |    455       465       475       485   |   495       505       515       525       535       545       555       565       575       585       595      |605       615       625       635       645       655       665       675       685       695       705       715       725       735     
                                                                                          67-MSE       80-MSE                                                                      157                                                                                                256        267-MSE                                                                   341                                                                                                                                     359                                394-MSE                                               448-MSE        463-MSE                   489-MSE                                                           555-MSE                                        602-MSE                                                                  675-MSE                                                             


Chain E from PDB  Type:PROTEIN  Length:623
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:853
                                   343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183   
          POLS_SINDV    334 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYMSLKQDHTVKEGTMDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRLKETTAGYITMHRPRPHAYTSYLEESSGKVYAKPPSGKNITYECKCGDYKTGTVSTRTEITGCTAIKQCVAYKSDQTKWVFNSPDLIRHDDHTAQGKLHLPFKLIPSTCMVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQESAPGDPHGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVAVLCACKARRECLTPYALAPNAVIPTSLALLCCVRSANAETFTETMSYLWSNSQPFFWVQLCIPLAAFIVLMRCCSCCLPFLVVAGAYLAKVDAYEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee........eee.....eee......eeeee...ee...........eee...........eee...eeee...eeeeeeee..eeeee......eeeeee....eeeeee.....................eeeeeeee...------------------------------------------------------------------------------------------------......eeeeeeee......eeeee..eeeeeeeeeeeeeeeeee.........eeeeeee..........eeeee......ee...--------------------------------------------------------------------------------------------------------------------------------------..eeeeeeeee......eeeee.......eeeeeeeeee..eeeeeeeeee..eeee....ee................eeeeee..................eeeeeeeeee........eeeeeeeeee..eeeeeee..eeeeee.......eee....eeee............eeee....eee................ee.........ee....ee...........ee...hhhhhhhh....hhhhh.....eee....eee.....eeeeeeeee.hhh........eeeeeeeeee........eeeeeeeee.....ee.ee.....ee...ee......eeeeeee.........ee............ Sec.struct. author
                 SAPs(SNPs) -----------------E----------------------------------------------E-------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3muu E    6 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYmSLKQDHTVKEGTmDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRL------------------------------------------------------------------------------------------------LHLPFKLIPSTCmVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQ--------------------------------------------------------------------------------------------------------------------------------------GGGYEHATTVPNVPQIPYKALVERAGYAPLNLEITVmSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHAGYTCKVFGGVYPFmWGGAQCFCDSENSQmSEAYVELSADCASDHAQAIKVHTAAmKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAmKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEmWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGmATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC  740
                                    15        25        35        45        55        65 |      75    |   85        95       105       115       125       135       145       155  |      -         -         -         -         -         -         -         -         -       255       265 |     275       285       295       305       315       325       335     |   -         -         -         -         -         -         -         -         -         -         -         -         -         -|      367       377       387      |397       407       417       427       437       447|      457     | 467       477       487 |     497       507       517       527       537       547       557       567       577       587       597    |  607       617       627       637       647       657       667       677       687       697       707       717       727       737   
                                                                                        67-MSE       80-MSE                                                                       158                                                                                              255         267-MSE                                                                   341                                                                                                                                    358                                 394-MSE                                               448-MSE        463-MSE                   489-MSE                                                           555-MSE                                        602-MSE                                                                  675-MSE                                                             


Chain F from PDB  Type:PROTEIN  Length:618
 aligned with POLS_SINDV | P03316 from UniProtKB/Swiss-Prot  Length:1245

    Alignment length:853
                                   343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183   
          POLS_SINDV    334 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYMSLKQDHTVKEGTMDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRLKETTAGYITMHRPRPHAYTSYLEESSGKVYAKPPSGKNITYECKCGDYKTGTVSTRTEITGCTAIKQCVAYKSDQTKWVFNSPDLIRHDDHTAQGKLHLPFKLIPSTCMVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQESAPGDPHGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVAVLCACKARRECLTPYALAPNAVIPTSLALLCCVRSANAETFTETMSYLWSNSQPFFWVQLCIPLAAFIVLMRCCSCCLPFLVVAGAYLAKVDAYEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC 1186
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----Alpha_E2_glycop-3muuF07 F:11-341                                                                                                                                                                                                                                                                                                                                                                                                                                                   -Alpha_E1_glycop-3muuF01 F:361-740                                                                                                                                                                                                                                                                                                                                                            Pfam domains (1)
           Pfam domains (2) -----Alpha_E2_glycop-3muuF08 F:11-341                                                                                                                                                                                                                                                                                                                                                                                                                                                   -Alpha_E1_glycop-3muuF02 F:361-740                                                                                                                                                                                                                                                                                                                                                            Pfam domains (2)
           Pfam domains (3) -----Alpha_E2_glycop-3muuF09 F:11-341                                                                                                                                                                                                                                                                                                                                                                                                                                                   -Alpha_E1_glycop-3muuF03 F:361-740                                                                                                                                                                                                                                                                                                                                                            Pfam domains (3)
           Pfam domains (4) -----Alpha_E2_glycop-3muuF10 F:11-341                                                                                                                                                                                                                                                                                                                                                                                                                                                   -Alpha_E1_glycop-3muuF04 F:361-740                                                                                                                                                                                                                                                                                                                                                            Pfam domains (4)
           Pfam domains (5) -----Alpha_E2_glycop-3muuF11 F:11-341                                                                                                                                                                                                                                                                                                                                                                                                                                                   -Alpha_E1_glycop-3muuF05 F:361-740                                                                                                                                                                                                                                                                                                                                                            Pfam domains (5)
           Pfam domains (6) -----Alpha_E2_glycop-3muuF12 F:11-341                                                                                                                                                                                                                                                                                                                                                                                                                                                   -Alpha_E1_glycop-3muuF06 F:361-740                                                                                                                                                                                                                                                                                                                                                            Pfam domains (6)
         Sec.struct. author ........eee........eee.....eee......eeeee...ee...........eee...........eee...eeee...eeeeeeee..eeeee......eeeeee....eeeeee.....................eeeeeeee...---------------------------------------------------------------------------------------------------...eeeeeeee......eeeee..eeeeeeeeeeeeeeeeee.........eeeeeee..........eeeee......ee...----------------------------------------------------------------------------------------------------------------------------------------.eeeeeeee......eeeee.......eeeeeeeeee..eeeeeeeeee..eeee....ee................eeeeee..................eeeeeeeeee........eeeeeeeeee..eeeeeee..eeeeee........ee....eeee............eeee....eee................ee.........ee....ee...........ee...hhhhhhhh....hhhhh.....eee....eee.....eeeeeeeehhhhh........eeeeeeeeee........eeeeeeeee.....ee.ee.....ee...ee......eeeeeee.........ee............ Sec.struct. author
                 SAPs(SNPs) -----------------E----------------------------------------------E-------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3muu F    6 FTLTSPYLGTCSYCHHTVPCFSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYmSLKQDHTVKEGTmDDIKISTSGPCRRLSYKGYFLLAKCPPGDSVTVSIVSSNSATSCTLARKIKPKFVGREKYDLPPVHGKKIPCTVYDRL---------------------------------------------------------------------------------------------------PFKLIPSTCmVPVAHAPNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEYIWGNHEPVRVYAQ----------------------------------------------------------------------------------------------------------------------------------------GYEHATTVPNVPQIPYKALVERAGYAPLNLEITVmSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHAGYTCKVFGGVYPFmWGGAQCFCDSENSQmSEAYVELSADCASDHAQAIKVHTAAmKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAmKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEmWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRTSDAPLVSTVKCEVSECTYSADFGGmATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAEC  740
                                    15        25        35        45        55        65 |      75    |   85        95       105       115       125       135       145       155  |      -         -         -         -         -         -         -         -         -         -  |    265 |     275       285       295       305       315       325       335     |   -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    367       377       387      |397       407       417       427       437       447|      457     | 467       477       487 |     497       507       517       527       537       547       557       567       577       587       597    |  607       617       627       637       647       657       667       677       687       697       707       717       727       737   
                                                                                        67-MSE       80-MSE                                                                       158                                                                                                 258      267-MSE                                                                   341                                                                                                                                      360                               394-MSE                                               448-MSE        463-MSE                   489-MSE                                                           555-MSE                                        602-MSE                                                                  675-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MUU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MUU)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: Alpha_E1_glycop] (11)
(-)
Clan: no clan defined [family: Alpha_E2_glycop] (9)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (POLS_SINDV | P03316)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
    GO:0044389    ubiquitin-like protein ligase binding    Interacting selectively and non-covalently with a ubiquitin-like protein ligase, such as ubiquitin-ligase.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0061025    membrane fusion    The membrane organization process that joins two lipid bilayers to form a single membrane.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039619    T=4 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres.
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0098029    icosahedral viral capsid, spike    A short structure attached to an icosahedral virion capsid, and used for attachment to the host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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  3muu
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLS_SINDV | P03316: 1kxa 1kxb 1kxc 1kxd 1kxe 1kxf 1ld4 1svp 1z8y 2snv 2snw 3j0f 3muw

(-) Related Entries Specified in the PDB File

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